CN185938

Overview
NameCN185938
Unique NameCN185938
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185938 vs. ExPASy Swiss-Prot
Match: Y1848_ARATH (Probable inactive receptor kinase At1g48480 OS=Arabidopsis thaliana GN=RKL1 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.761e-20
Identity = 68/175 (38.86%), Postives = 89/175 (50.86%), Query Frame = 3
Query:  165 WNATNQIHHCNWSGITCDHSSNHVIAIKLVDKQLQGQISP-FLGNLSALQVLDLSLNSFSGSIPAQLGQCSQLAELTLYYNSLSGSIPPEIGSLQNLQAMDLGKNFLKGSIPESICNCTSLLALGLIFNNLTGTIPKDIGNLISLQMFVAYHNRLVGSIPVSMGRLEALQALDVS 686
            WN   Q   CNW+G+ C+  SN V A++L    L G I     GNL+ L+ L L LN+ SGS+P  L   S L  L L  N  SG IP  + SL +L  ++L  N   G I     N T L  L L  N L+G+IP D+   + L  F   +N L GSIP ++ R E+   L  S
Sbjct:   54 WNI-KQTSPCNWAGVKCE--SNRVTALRLPGVALSGDIPEGIFGNLTQLRTLSLRLNALSGSLPKDLSTSSNLRHLYLQGNRFSGEIPEVLFSLSHLVRLNLASNSFTGEISSGFTNLTKLKTLFLENNQLSGSIP-DLD--LPLVQFNVSNNSLNGSIPKNLQRFESDSFLQTS 222          
BLAST of CN185938 vs. ExPASy Swiss-Prot
Match: Y4374_ARATH (Probable inactive receptor kinase At4g23740 OS=Arabidopsis thaliana GN=At4g23740 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.606e-20
Identity = 63/163 (38.65%), Postives = 90/163 (55.21%), Query Frame = 3
Query:  162 DWNATNQIHHCN-WSGITCDHSSNHVIAIKLVDKQLQGQISP-FLGNLSALQVLDLSLNSFSGSIPAQLGQCSQLAELTLYYNSLSGSIPPEIGSLQNLQAMDLGKNFLKGSIPESICNCTSLLALGLIFNNLTGTIPKDIGNLISLQMFVAYHN-RLVGSIP 641
            +WN T+Q+  CN W+G+TC+   + +IA++L    L GQI P  +  LSAL+VL L  N  SG  P    +   LA L L  N+LSG +P +    +NL +++L  N   G+IP S+     + +L L  N L+G IP D+  L SLQ     +N  L G IP
Sbjct:   47 NWNETSQV--CNIWTGVTCNQDGSRIIAVRLPGVGLNGQIPPNTISRLSALRVLSLRSNLISGEFPKDFVELKDLAFLYLQDNNLSGPLPLDFSVWKNLTSVNLSNNGFNGTIPSSLSRLKRIQSLNLANNTLSGDIP-DLSVLSSLQHIDLSNNYDLAGPIP 206          
BLAST of CN185938 vs. ExPASy Swiss-Prot
Match: SRF5_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsis thaliana GN=SRF5 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.606e-20
Identity = 75/224 (33.48%), Postives = 106/224 (47.32%), Query Frame = 3
Query:   57 TVALSPAERSLEEVETEALKAFKNGITSDPLGALADWNATNQIHHC--NWSGITCDHSSNHVIAIKLVDKQLQGQISPFLGNLSALQVLDLSLNSFSGSIPAQLGQCSQLAELTLYYNSLSGSIPPEIGSLQNLQAMDLGKNFLKGSIPESICNCTSLLALGLIFNNLTGTIPKDIGNLISLQMFVAYHNRLVGSIPVSMGRLEALQALDVSQNMLSGTIPLEI 722
            TV L  A+   +EV   AL      + S     L  W A N    C  +W G+ C  SS  V  ++L   +L G     L NL +L   DLS N+  G+IP QL     +A L    N L G++P  +  ++NLQ+++LG+N L G +P+     + L  L    N L+G +P+   NL SL+      NR  G I V   R  A+  L+V  N   G IP E+
Sbjct:   16 TVTLLQAKTDNQEVS--ALNVMFTSLNSP--SKLKGWKA-NGGDPCEDSWEGVKCKGSS--VTELQLSGFELGGSRGYLLSNLKSLTTFDLSKNNLKGNIPYQLPP--NIANLDFSENELDGNVPYSLSQMKNLQSINLGQNKLNGELPDMFQKLSKLETLDFSLNKLSGKLPQSFANLTSLKKLHLQDNRFTGDINVL--RNLAIDDLNVEDNQFEGWIPNEL 228          
BLAST of CN185938 vs. ExPASy Swiss-Prot
Match: SERK4_ARATH (Somatic embryogenesis receptor kinase 4 OS=Arabidopsis thaliana GN=SERK4 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.606e-20
Identity = 65/183 (35.52%), Postives = 97/183 (53.01%), Query Frame = 3
Query:   99 ETEALKAFKNGITS-DPLG-ALADWNATNQIHHCNWSGITCDHSSNHVIAIKLVDKQLQGQISPFLGNLSALQVLDLSLNSFSGSIPAQLGQCSQLAELTLYYNSLSGSIPPEIGSLQNLQAMDLGKNFLKGSIPESICNCTSLLALGLIFNNLTGTIPKDIGNLISLQMFVAYHNRLVGSIP 641
            E +AL   KN ++S DP    L  W+AT  +  C W  +TC+   N V  + L + +L G++ P LG L  LQ L+L  N+ +G IP +LG   +L  L LY NS+SG IP  +G L  L+ + L  N L G IP ++ +   L  L +  N L+G IP  +    SL   +++ N  +  +P
Sbjct:   32 EGDALTQLKNSLSSGDPANNVLQSWDAT-LVTPCTWFHVTCN-PENKVTRVDLGNAKLSGKLVPELGQLLNLQYLELYSNNITGEIPEELGDLVELVSLDLYANSISGPIPSSLGKLGKLRFLRLNNNSLSGEIPMTLTS-VQLQVLDISNNRLSGDIP--VNGSFSLFTPISFANNSLTDLP 209          
BLAST of CN185938 vs. ExPASy Swiss-Prot
Match: SRF3_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsis thaliana GN=SRF3 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.709e-20
Identity = 59/172 (34.30%), Postives = 91/172 (52.91%), Query Frame = 3
Query:  198 WSGITCDHSSNHVIAIKLVDKQLQGQISPFLGNLSALQVLDLSLNSFSGSIPAQLGQCSQLAELTLYYNSLSGSIPPEIGSLQNLQAMDLGKNFLKGSIPESICNCTSLLALGLIFNNLTGTIPKDIGNLISLQMFVAYHNRLVGSIPVSMGRLEALQALDVSQNMLSGTIP 713
            W GI C+ S   +I+I +    LQG++   L   ++++ +D S N   GSIP+ L    Q     L  N  +GSIP  +G+L  L  M L  N L G +P+   N   L+ L +  NN++GT+P  + NL++L      +N+L G++ V  G    LQ L++  N+ SG IP
Sbjct:   66 WQGIICNVSD--IISITVNAANLQGELGDNLAKFTSIRGIDFSNNRIGGSIPSTLPVTLQ--HFFLSANQFTGSIPESLGTLSFLNDMSLNDNLLSGELPDVFQNLVGLINLDISSNNISGTLPPSMENLLTLTTLRVQNNQLSGTLDVLQGL--PLQDLNIENNLFSGPIP 231          
BLAST of CN185938 vs. ExPASy Swiss-Prot
Match: Y5457_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g45780 OS=Arabidopsis thaliana GN=At5g45780 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.370e-19
Identity = 56/157 (35.67%), Postives = 83/157 (52.87%), Query Frame = 3
Query:   99 ETEALKAFKNGITSDPLGALADWNATNQIHHCNWSGITCDHSSNHVIAIKLVDKQLQGQISPFLGNLSALQVLDLSLNSFSGSIPAQLGQCSQLAELTLYYNSLSGSIPPEIGSLQNLQAMDLGKNFLKGSIPESICNCTSLLALGLIFNNLTGTIP 569
            E  AL + KN +  D    L+ W+  N +  C W+ + C  S   V+++++  K L G +S  +G L+ L  L L  N  +G IP++LGQ S+L  L L  N  SG IP  +G L +L  + L +N L G +P  +   + L  L L FNNL+G  P
Sbjct:   39 EVAALMSVKNKM-KDEKEVLSGWDI-NSVDPCTWNMVGCS-SEGFVVSLEMASKGLSGILSTSIGELTHLHTLLLQNNQLTGPIPSELGQLSELETLDLSGNRFSGEIPASLGFLTHLNYLRLSRNLLSGQVPHLVAGLSGLSFLDLSFNNLSGPTP 192          
BLAST of CN185938 vs. ExPASy Swiss-Prot
Match: TMM_ARATH (Protein TOO MANY MOUTHS OS=Arabidopsis thaliana GN=TMM PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.370e-19
Identity = 62/149 (41.61%), Postives = 83/149 (55.70%), Query Frame = 3
Query:  270 GQISPFLGNLSALQVLDLSLNSFSGSIPAQLGQCSQLAELTLYYNSLSGSIPPEIGSLQNLQAMDLGKNFLKGSIPESICNCTSLLALGLIFNNLTGTIPKDIGNLISLQMFVAYHNRLVGSIPVSMGRLEALQALDVSQN-MLSGTIP 713
            G I   LGNL+ L+VLDL  N  +GSIP    + S L  L L  N L+GSIP  +  L  L  +DL +N L G +P ++ +C SL+ + L  N +TG IP+ I  L  L +    +NRL G  P S+  L +LQAL +  N   S TIP
Sbjct:  173 GPIPDELGNLTNLKVLDLHKNHLNGSIPLSFNRFSGLRSLDLSGNRLTGSIPGFV--LPALSVLDLNQNLLTGPVPPTLTSCGSLIKIDLSRNRVTGPIPESINRLNQLVLLDLSYNRLSGPFPSSLQGLNSLQALMLKGNTKFSTTIP 319          

HSP 2 Score: 84.3445 bits (207), Expect = 7.037e-16
Identity = 54/154 (35.06%), Postives = 81/154 (52.60%), Query Frame = 3
Query:  264 LQGQISPFLGNLSALQVLDLSLNSFSGSIPAQLGQCSQLAELTLYYNSLSGSIPPEIGSLQNLQAMDL-GKNFLKGSIPE-SICNCTSLLALGLIFNNLTGTIPKDIGNLISLQMFVAYHNRLVGSIPVSMGRLEALQALDVSQNMLSGTIPLE 719
            L G + P L +  +L  +DLS N  +G IP  + + +QL  L L YN LSG  P  +  L +LQA+ L G      +IPE +     +L+ L L   N+ G+IPK +  L SL++     N L G IP+    ++ L  L ++ N L+G +P E
Sbjct:  241 LTGPVPPTLTSCGSLIKIDLSRNRVTGPIPESINRLNQLVLLDLSYNRLSGPFPSSLQGLNSLQALMLKGNTKFSTTIPENAFKGLKNLMILVLSNTNIQGSIPKSLTRLNSLRVLHLEGNNLTGEIPLEFRDVKHLSELRLNDNSLTGPVPFE 394          

HSP 3 Score: 78.9518 bits (193), Expect = 2.956e-14
Identity = 74/227 (32.60%), Postives = 96/227 (42.29%), Query Frame = 3
Query:  162 DWNAT-NQIHHCNWSGITCDHSSN---HVIAIKL-----------VDKQLQGQISPFLGNLSALQVLDL--SLNSFSGSIPAQLGQC-SQLAELTLYYNSLSGSIPPEIGSLQNLQAMDLGKNFLKGSIPESICNCTSLLALGLIFNNLTGTIP-------------------------KDIGNLISLQMFVAYHNRLVGSIPVSMGRLEALQALDVSQNMLSGTIP 713
            DW A    +    W GI C    +   HV+++              D Q +  +S  L  L  L+ L     L      IPA LG+  S L  L L  N   G IP E+G+L NL+ +DL KN L GSIP S    + L +L L  N LTG+IP                            G+LI + +     NR+ G IP S+ RL  L  LD+S N LSG  P
Sbjct:   72 DWAAAIPDVCRGRWHGIECMPDQDNVYHVVSLSFGALSDDTAFPTCDPQ-RSYVSESLTRLKHLKALFFYRCLGRAPQRIPAFLGRLGSSLQTLVLRENGFLGPIPDELGNLTNLKVLDLHKNHLNGSIPLSFNRFSGLRSLDLSGNRLTGSIPGFVLPALSVLDLNQNLLTGPVPPTLTSCGSLIKIDL---SRNRVTGPIPESINRLNQLVLLDLSYNRLSGPFP 294          
BLAST of CN185938 vs. ExPASy Swiss-Prot
Match: Y2239_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g23950 OS=Arabidopsis thaliana GN=At2g23950 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.052e-19
Identity = 58/158 (36.71%), Postives = 82/158 (51.90%), Query Frame = 3
Query:   99 ETEALKAFKNGITSDPLGALADWNATNQIHHCNWSGITCDHSSNHVIAIKLVDKQLQGQISPFLGNLSALQVLDLSLNSFSGSIPAQLGQCSQLAELTLYYNSLSGSIPPEIGSLQNLQAMDLGKNFLKGSIPESICNCTSLLALGLIFNNLTGTIPK 572
            E EAL   KN +  DP G   +W+  + +  C+W+ I+C  S N VI +    + L G +S  +GNL+ L+ + L  N+ SG IP ++    +L  L L  N  SG IP  +  L NLQ + L  N L G  P S+     L  L L +NNL G +PK
Sbjct:   34 EVEALINIKNEL-HDPHGVFKNWDEFS-VDPCSWTMISCS-SDNLVIGLGAPSQSLSGTLSGSIGNLTNLRQVSLQNNNISGKIPPEICSLPKLQTLDLSNNRFSGEIPGSVNQLSNLQYLRLNNNSLSGPFPASLSQIPHLSFLDLSYNNLRGPVPK 188          
BLAST of CN185938 vs. ExPASy Swiss-Prot
Match: SRF8_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsis thaliana GN=SRF8 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.052e-19
Identity = 60/176 (34.09%), Postives = 97/176 (55.11%), Query Frame = 3
Query:  195 NWSGITCDHSSNHVIAIKLVDKQLQGQISPFLGNLSALQVLDLSLNSFSGSIPAQLGQCSQLAELTLYYNSLSGSIPPEIGSLQNLQAMDLGKNFLKGSIPESICNCTSLLALGLIFNNLTGTIPKDIGNLISLQMFVAYHNRLVGSIPVSMGRLEALQALDVSQNMLSGTIPLEI 722
            +W GITC+ S+  V+ I + D  + G +   L +L +L+ LD+S NS   ++P QL     L  L L  N+LSG++P  I ++ +L  M++  N L  SI +   +  SL  L L  NN +G +P  +  + +L +    +N+L GSI V  G    L+ L+V+ N  +G+IP E+
Sbjct:   64 SWKGITCEGSA--VVTIDISDLGVSGTLGYLLSDLKSLRKLDVSGNSIHDTLPYQLPP--NLTSLNLARNNLSGNLPYSISAMGSLSYMNVSGNSLTMSIGDIFADHKSLATLDLSHNNFSGDLPSSLSTVSTLSVLYVQNNQLTGSIDVLSGL--PLKTLNVANNHFNGSIPKEL 233          
BLAST of CN185938 vs. ExPASy Swiss-Prot
Match: Y1699_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g69990 OS=Arabidopsis thaliana GN=At1g69990 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.207e-19
Identity = 63/169 (37.28%), Postives = 91/169 (53.85%), Query Frame = 3
Query:   93 EVETEALKAFKNGITSDPLGALADWNATNQIHH-CNWSGITC-DHSSNHVIAIKLVDKQLQGQISPFLGNLSALQVLDLSLNSFSGSIPAQLGQCS---QLAELTLYYNSLSGSIPPEIGSLQNLQAMDLGKNFLKGSIPESICNCTSLLALGLIFNNLTGTIPKDIGN 584
            E +   LK FK+ +  DP   L  W+  N     C  +G++C +   N +++++L   QL GQI   L    +LQ LDLS N FSG IP+Q+  CS    L  L L  N LSGSIP +I   + L ++ L +N L GSIP  +     L  L L  N+L+G+IP ++ +
Sbjct:   19 EDDVLCLKGFKSSL-KDPSNQLNTWSFPNSSSSICKLTGVSCWNAKENRILSLQLQSMQLSGQIPESLKLCRSLQSLDLSFNDFSGLIPSQI--CSWLPYLVTLDLSGNKLSGSIPSQIVDCKFLNSLALNQNKLTGSIPSELTRLNRLQRLSLADNDLSGSIPSELSH 184          
The following BLAST results are available for this feature:
BLAST of CN185938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
Y1848_ARATH2.761e-2038.86Probable inactive receptor kinase At1g48480 OS=Ara... [more]
Y4374_ARATH3.606e-2038.65Probable inactive receptor kinase At4g23740 OS=Ara... [more]
SRF5_ARATH3.606e-2033.48Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsi... [more]
SERK4_ARATH3.606e-2035.52Somatic embryogenesis receptor kinase 4 OS=Arabido... [more]
SRF3_ARATH4.709e-2034.30Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsi... [more]
Y5457_ARATH1.370e-1935.67Probable LRR receptor-like serine/threonine-protei... [more]
TMM_ARATH1.370e-1941.61Protein TOO MANY MOUTHS OS=Arabidopsis thaliana GN... [more]
Y2239_ARATH3.052e-1936.71Probable LRR receptor-like serine/threonine-protei... [more]
SRF8_ARATH3.052e-1934.09Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsi... [more]
Y1699_ARATH5.207e-1937.28Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002B17_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002B17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185938 ID=CN185938; Name=CN185938; organism=Citrus sinensis; type=EST; length=725bp
CGGTTCAGACAGTCAGCTTAAGCTTAATCGTAGTCATATCCTTTTCTCTC
TTTTCCACTGTTGCATTATCACCTGCAGAACGAAGCTTAGAAGAAGTAGA
AACTGAAGCCTTGAAGGCCTTTAAGAATGGCATCACCAGCGACCCTTTAG
GAGCACTTGCTGATTGGAATGCCACAAATCAAATTCATCACTGCAACTGG
TCTGGAATCACCTGTGACCATTCGTCAAACCATGTCATTGCCATTAAACT
CGTCGACAAGCAGCTCCAAGGCCAGATATCTCCATTCCTTGGCAACCTTT
CAGCCCTCCAGGTTCTCGATTTATCTTTGAATTCATTCTCTGGGAGTATT
CCGGCTCAGCTGGGGCAATGCTCCCAGCTTGCTGAACTAACTCTATACTA
TAATTCTCTTTCGGGTTCCATTCCACCAGAAATAGGATCCCTTCAGAATC
TGCAAGCAATGGACTTAGGAAAGAACTTCTTGAAGGGAAGCATACCCGAA
AGCATTTGCAACTGTACTTCCTTGTTAGCGCTTGGTCTCATTTTCAACAA
TCTTACTGGTACAATCCCAAAAGACATCGGAAATTTGATAAGCCTTCAAA
TGTTTGTAGCATACCACAACAGGCTTGTAGGTTCAATTCCAGTTTCCATG
GGTAGATTAGAAGCCTTGCAAGCTTTAGATGTGAGTCAGAACATGTTGTC
GGGAACAATACCTCTAGAAATAGGA
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