CN185933

Overview
NameCN185933
Unique NameCN185933
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12264 contig Csv1_Contig12264:850..1547. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185933 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.511e-17
Identity = 44/46 (95.65%), Postives = 46/46 (100.00%), Query Frame = 3
Query:  561 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGK 698
            LKRIENKINRQVTF+KRRNGLLKKAYELSVLCDAEVALIIFS+RGK
Sbjct:    8 LKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGK 53          
BLAST of CN185933 vs. ExPASy Swiss-Prot
Match: AGL6_ARATH (Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana GN=AGL6 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.989e-17
Identity = 43/46 (93.48%), Postives = 46/46 (100.00%), Query Frame = 3
Query:  561 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGK 698
            +KRIENKINRQVTF+KRRNGLLKKAYELSVLCDAEVALIIFS+RGK
Sbjct:    8 MKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGK 53          
BLAST of CN185933 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSJ (MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica GN=MADS5 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.742e-16
Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 3
Query:  561 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGK 698
            LKRIENKI+RQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS RG+
Sbjct:    8 LKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGR 53          
BLAST of CN185933 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSI (MADS-box transcription factor 5 OS=Oryza sativa subsp. indica GN=MADS5 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.742e-16
Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 3
Query:  561 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGK 698
            LKRIENKI+RQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS RG+
Sbjct:    8 LKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGR 53          
BLAST of CN185933 vs. ExPASy Swiss-Prot
Match: CYT1_HORVU (Cysteine proteinase inhibitor OS=Hordeum vulgare GN=ICY PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.276e-16
Identity = 44/91 (48.35%), Postives = 56/91 (61.54%), Query Frame = -1
Query:  276 LGGVRNVEATANNQ-EIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXSGTLYDITLEAPEGGQKKLFEAKVWEKPWMQFKELKEFNPVA 545
            LGGV++  A   N  E + LARFAV EHN K N+ L+F           +G ++  T+E  EGG KKL+EAKVWEK W  FK+L+EF P A
Sbjct:   17 LGGVQDAPAGRENDLETIELARFAVAEHNAKANALLEFEKLVKVRQQVVAGCMHYFTIEVKEGGAKKLYEAKVWEKAWENFKQLQEFKPAA 107          
BLAST of CN185933 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSJ (MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica GN=MADS1 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.882e-16
Identity = 42/46 (91.30%), Postives = 45/46 (97.83%), Query Frame = 3
Query:  561 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGK 698
            LKRIENKI+RQVTFAKRRNGLLKKAYELS+LCDAEVALIIFS RG+
Sbjct:    8 LKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGR 53          
BLAST of CN185933 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSI (MADS-box transcription factor 1 OS=Oryza sativa subsp. indica GN=MADS1 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.882e-16
Identity = 42/46 (91.30%), Postives = 45/46 (97.83%), Query Frame = 3
Query:  561 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGK 698
            LKRIENKI+RQVTFAKRRNGLLKKAYELS+LCDAEVALIIFS RG+
Sbjct:    8 LKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGR 53          
BLAST of CN185933 vs. ExPASy Swiss-Prot
Match: CYT1_ARATH (Cysteine proteinase inhibitor 1 OS=Arabidopsis thaliana GN=CYS1 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.882e-16
Identity = 39/93 (41.94%), Postives = 60/93 (64.52%), Query Frame = -1
Query:  285 QQTMATLGGVRNVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXSGTLYDITLEAPEGGQKKLFEAKVWEKPWMQFKELKEFN 563
            QQ    +GGVR+++A AN+ ++ +LARFAVDEHNK +N  L++           +GT++ +T+E  +G   K++EAKV EK W   K+L+ FN
Sbjct:    4 QQAGTIVGGVRDIDANANDLQVESLARFAVDEHNKNENLTLEYKRLLGAKTQVVAGTMHHLTVEVADGETNKVYEAKVLEKAWENLKQLESFN 96          
BLAST of CN185933 vs. ExPASy Swiss-Prot
Match: AGL9_ARADE (Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.648e-16
Identity = 43/46 (93.48%), Postives = 43/46 (93.48%), Query Frame = 3
Query:  561 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGK 698
            LK IENKINRQVTFAKRR  LLKKAYELSVLCDAEVALIIFSNRGK
Sbjct:    8 LKMIENKINRQVTFAKRRKRLLKKAYELSVLCDAEVALIIFSNRGK 53          
BLAST of CN185933 vs. ExPASy Swiss-Prot
Match: AG_SOLLC (Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.475e-15
Identity = 39/46 (84.78%), Postives = 43/46 (93.48%), Query Frame = 3
Query:  561 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGK 698
            +KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVAL++FSNRG+
Sbjct:   24 IKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGR 69          
The following BLAST results are available for this feature:
BLAST of CN185933 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
MAD17_ORYSJ3.511e-1795.65MADS-box transcription factor 17 OS=Oryza sativa s... [more]
AGL6_ARATH5.989e-1793.48Agamous-like MADS-box protein AGL6 OS=Arabidopsis ... [more]
MADS5_ORYSJ1.742e-1693.48MADS-box transcription factor 5 OS=Oryza sativa su... [more]
MADS5_ORYSI1.742e-1693.48MADS-box transcription factor 5 OS=Oryza sativa su... [more]
CYT1_HORVU2.276e-1648.35Cysteine proteinase inhibitor OS=Hordeum vulgare G... [more]
MADS1_ORYSJ3.882e-1691.30MADS-box transcription factor 1 OS=Oryza sativa su... [more]
MADS1_ORYSI3.882e-1691.30MADS-box transcription factor 1 OS=Oryza sativa su... [more]
CYT1_ARATH3.882e-1641.94Cysteine proteinase inhibitor 1 OS=Arabidopsis tha... [more]
AGL9_ARADE8.648e-1693.48Agamous-like MADS-box protein AGL9 homolog OS=Aran... [more]
AG_SOLLC1.475e-1584.78Floral homeotic protein AGAMOUS OS=Solanum lycoper... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002B13_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002B13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185933 ID=CN185933; Name=CN185933; organism=Citrus sinensis; type=EST; length=698bp
CGGTTTTGTATATATATTAAACACCAAAGGTCATTTCAATTCTTTTTCAC
ACAGTTATAAAAGTTGCGCTGAGTTGCAGCTACTACCATAAATAATCGAC
ACATAACTTGCAAAAGATTAAAGAACCAAACTCATAAGTCCGGTTACATT
TGGTGTGAGAATCTGAACATGGTTATAGCTCCATTCTTATTGATACTGTC
TCTTTGTTTGATCCATTGCAAGCTACAGATGTCATCTTCAGTCACCACAA
GCTAAGCGGTTGAGGAGTGAGACTGAGCAACAGGATTGAATTCTTTCAAC
TCCTTGAATTGCATCCAAGGCTTCTCCCAGACCTTAGCTTCAAAAAGTTT
CTTCTGACCTCCTTCGGGAGCCTCCAAGGTGATGTCGTACAGAGTCCCTG
AAACCACTTGCTGCTTCGCACTTACAACTTTTACAAATTGCAGATTTGAA
TTCTGCTTCTTGTTATGCTCATCCACAGCGAAGCGTGCGAGATTAACGAT
CTCCTGATTGTTGGCTGTTGCTTCAACGTTACGAACACCGCCCAATGTAG
CCATTGTTTGTTGAAGAGGATAGAGAACAAGATCAACAGGCAAGTGACCT
TTGCAAAGAGAAGAAATGGCCTTTTGAAGAAAGCTTATGAGCTTTCCGTT
CTTTGTGATGCTGAGGTTGCTCTCATCATTTTCTCCAATAGAGGAAAG
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