CN185933

Overview
NameCN185933
Unique NameCN185933
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12264 contig Csv1_Contig12264:850..1547. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185933 vs. ExPASy Swiss-Prot
Match: AGL8_SOLCO (Agamous-like MADS-box protein AGL8 homolog OS=Solanum commersonii GN=SCM1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.561e-15
Identity = 38/46 (82.61%), Postives = 44/46 (95.65%), Query Frame = 3
Query:  561 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGK 698
            LKRIENKINRQVTF+KRR+GLLKKA+E+SVLCDAEV LI+FS +GK
Sbjct:    8 LKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGK 53          
BLAST of CN185933 vs. ExPASy Swiss-Prot
Match: MAD21_ORYSJ (MADS-box transcription factor 21 OS=Oryza sativa subsp. japonica GN=MADS21 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.249e-14
Identity = 36/46 (78.26%), Postives = 44/46 (95.65%), Query Frame = 3
Query:  561 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGK 698
            +KRIENK +RQVTF KRRNGLLKKAYEL++LCDAE+ALI+FS+RG+
Sbjct:    8 IKRIENKTSRQVTFCKRRNGLLKKAYELAILCDAEIALIVFSSRGR 53          
BLAST of CN185933 vs. ExPASy Swiss-Prot
Match: MAD13_ORYSJ (MADS-box transcription factor 13 OS=Oryza sativa subsp. japonica GN=MADS13 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.631e-14
Identity = 38/46 (82.61%), Postives = 43/46 (93.48%), Query Frame = 3
Query:  561 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGK 698
            +KRIEN  +RQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+
Sbjct:    8 IKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGR 53          
BLAST of CN185933 vs. ExPASy Swiss-Prot
Match: CAL_ARATH (Transcription factor CAULIFLOWER OS=Arabidopsis thaliana GN=CAL PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.631e-14
Identity = 38/46 (82.61%), Postives = 44/46 (95.65%), Query Frame = 3
Query:  561 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGK 698
            LKRIENKINRQVTF+KRR GLLKKA E+SVLCDAEV+LI+FS++GK
Sbjct:    8 LKRIENKINRQVTFSKRRTGLLKKAQEISVLCDAEVSLIVFSHKGK 53          
BLAST of CN185933 vs. ExPASy Swiss-Prot
Match: MAD58_ORYSJ (MADS-box transcription factor 58 OS=Oryza sativa subsp. japonica GN=MADS58 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.130e-14
Identity = 37/46 (80.43%), Postives = 43/46 (93.48%), Query Frame = 3
Query:  561 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGK 698
            +KRIEN  NRQVTF KRR+GLLKKAYELSVLCDAEVAL++FS+RG+
Sbjct:   50 IKRIENTTNRQVTFCKRRSGLLKKAYELSVLCDAEVALVVFSSRGR 95          
BLAST of CN185933 vs. ExPASy Swiss-Prot
Match: CYTM_SOLTU (Multicystatin OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.130e-14
Identity = 41/88 (46.59%), Postives = 57/88 (64.77%), Query Frame = -1
Query:  288 ATLGGVRNVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXSGTLYDITLEAPEGGQKKLFEAKVWEKPWMQFKELKEF 551
            A LGG+ NV    NN E  +LARFAV ++NKK+N++L+F           +G LY ITL A + G+KK++EAK+W K W  FK++ EF
Sbjct:  474 AKLGGIINVPFP-NNPEFQDLARFAVQDYNKKENAHLEFVENLNVKEQLVAGMLYYITLVAIDAGKKKIYEAKIWVKEWENFKKVIEF 560          

HSP 2 Score: 76.6406 bits (187), Expect = 1.381e-13
Identity = 39/103 (37.86%), Postives = 60/103 (58.25%), Query Frame = -1
Query:  246 MATLGGVRNVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXSGTLYDITLEAPEGGQKKLFEAKVWEKPWMQFKELKEFNPVAQSHSSTA*LV 554
            +A LGG+ +V    NN E  +LARFA+  +NKK+N +L+F           +G +Y ITL A + G+KK++E K+W K W  FK++ EF  V    + T  ++
Sbjct:  190 IAKLGGITDVPFP-NNPEFQDLARFAIQVYNKKENVHLEFVENLNVKQQVVAGMMYYITLAAIDAGKKKIYETKIWVKEWEDFKKVVEFKLVGDDSAKTGGII 291          

HSP 3 Score: 76.6406 bits (187), Expect = 1.381e-13
Identity = 38/103 (36.89%), Postives = 61/103 (59.22%), Query Frame = -1
Query:  243 ATLGGVRNVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXSGTLYDITLEAPEGGQKKLFEAKVWEKPWMQFKELKEFNPVAQSHSSTA*LVV 551
            A +GG  +V    NN E  +LARFAV ++NKK+N++L++           +G +Y ITL A + G+KK++EAK+W K W  FK++ EF  V    +    +++
Sbjct:  568 AIIGGFTDVPFP-NNPEFQDLARFAVQDYNKKENAHLEYVENLNVKEQLVAGMIYYITLVATDAGKKKIYEAKIWVKEWEDFKKVVEFKLVGDDSAKPGGIII 669          

HSP 4 Score: 71.2478 bits (173), Expect = 5.801e-12
Identity = 37/89 (41.57%), Postives = 55/89 (61.80%), Query Frame = -1
Query:  279 GGVRNVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXSGTLYDITLEA-PEGGQKKLFEAKVWEKPWMQFKELKEFNPV 542
            GG+ NV    NN +   LARFA+ ++NKKQN++L+F           +G +Y ITL A  + G+KK+++AK+W K W  FK++ EF  V
Sbjct:   99 GGIVNVP-NPNNTKFQELARFAIQDYNKKQNAHLEFVENLNVKEQVVAGIMYYITLAATDDAGKKKIYKAKIWVKEWEDFKKVVEFKLV 186          

HSP 5 Score: 70.8626 bits (172), Expect = 7.576e-12
Identity = 37/89 (41.57%), Postives = 52/89 (58.43%), Query Frame = -1
Query:  279 LGGVRNVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXSGTLYDITLEAPEGGQKKLFEAKVWEKPWMQFKELKEFNPV 545
            LGG   V    N+ E  +L RFAV ++NK QN++L+F           +G LY IT  A +GG+KK++E K+W K W  FK++ EF  V
Sbjct:  382 LGGFTEVPFP-NSPEFQDLTRFAVHQYNKDQNAHLEFVENLNVKKQVVAGMLYYITFAATDGGKKKIYETKIWVKVWENFKKVVEFKLV 469          

HSP 6 Score: 70.4774 bits (171), Expect = 9.894e-12
Identity = 38/91 (41.76%), Postives = 53/91 (58.24%), Query Frame = -1
Query:  279 ATLGGVRNVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXSGTLYDITLEAPEGGQKKLFEAKVWEKPWMQFKELKEFNPV 551
            A  GG+ NV    N+ E  +LARFAV ++N  QN++L+F           SG +Y ITL A + G KK +EAK+W K W  FK++ +F  V
Sbjct:  285 AKTGGIINVP-NPNSPEFQDLARFAVQDYNNTQNAHLEFVENLNVKEQLVSGMMYYITLAATDAGNKKEYEAKIWVKEWEDFKKVIDFKLV 374          
BLAST of CN185933 vs. ExPASy Swiss-Prot
Match: CYT7_ARATH (Cysteine proteinase inhibitor 7 OS=Arabidopsis thaliana GN=CYS7 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.782e-14
Identity = 40/93 (43.01%), Postives = 58/93 (62.37%), Query Frame = -1
Query:  270 LGGVRNVEATANN-QEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXSGTLYDITLEAPEGGQKKLFEAKVWEKPWMQFKELKEFNPVAQS 545
            LGG  + +   N  +EI ++A FAV EHN+++N+ L+            +G LY +TLE  E G+KK++EAKVW KPWM FK+L+EF  +  S
Sbjct:   45 LGGFSDSKNDWNGGKEIDDIALFAVQEHNRRENAVLELARVLKATEQVVAGKLYRLTLEVIEAGEKKIYEAKVWVKPWMNFKQLQEFKNIIPS 137          
BLAST of CN185933 vs. ExPASy Swiss-Prot
Match: AGL14_ARATH (Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.782e-14
Identity = 39/46 (84.78%), Postives = 43/46 (93.48%), Query Frame = 3
Query:  561 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGK 698
            +KRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVALIIFS RGK
Sbjct:    8 MKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGK 53          
BLAST of CN185933 vs. ExPASy Swiss-Prot
Match: MAD50_ORYSJ (MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica GN=MADS50 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.633e-14
Identity = 38/46 (82.61%), Postives = 43/46 (93.48%), Query Frame = 3
Query:  561 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGK 698
            +KRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVALI+FS RGK
Sbjct:    8 MKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGK 53          
BLAST of CN185933 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSI (MADS-box transcription factor 14 OS=Oryza sativa subsp. indica GN=MADS14 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.633e-14
Identity = 39/46 (84.78%), Postives = 43/46 (93.48%), Query Frame = 3
Query:  561 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGK 698
            LKRIEN INRQVTF+KRR+GLLKKA E+SVLCDAEVALIIFS +GK
Sbjct:    8 LKRIENTINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGK 53          
The following BLAST results are available for this feature:
BLAST of CN185933 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
AGL8_SOLCO9.561e-1582.61Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
MAD21_ORYSJ1.249e-1478.26MADS-box transcription factor 21 OS=Oryza sativa s... [more]
MAD13_ORYSJ1.631e-1482.61MADS-box transcription factor 13 OS=Oryza sativa s... [more]
CAL_ARATH1.631e-1482.61Transcription factor CAULIFLOWER OS=Arabidopsis th... [more]
MAD58_ORYSJ2.130e-1480.43MADS-box transcription factor 58 OS=Oryza sativa s... [more]
CYTM_SOLTU2.130e-1446.59Multicystatin OS=Solanum tuberosum PE=2 SV=1[more]
CYT7_ARATH2.782e-1443.01Cysteine proteinase inhibitor 7 OS=Arabidopsis tha... [more]
AGL14_ARATH2.782e-1484.78Agamous-like MADS-box protein AGL14 OS=Arabidopsis... [more]
MAD50_ORYSJ3.633e-1482.61MADS-box transcription factor 50 OS=Oryza sativa s... [more]
MAD14_ORYSI3.633e-1484.78MADS-box transcription factor 14 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002B13_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002B13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185933 ID=CN185933; Name=CN185933; organism=Citrus sinensis; type=EST; length=698bp
CGGTTTTGTATATATATTAAACACCAAAGGTCATTTCAATTCTTTTTCAC
ACAGTTATAAAAGTTGCGCTGAGTTGCAGCTACTACCATAAATAATCGAC
ACATAACTTGCAAAAGATTAAAGAACCAAACTCATAAGTCCGGTTACATT
TGGTGTGAGAATCTGAACATGGTTATAGCTCCATTCTTATTGATACTGTC
TCTTTGTTTGATCCATTGCAAGCTACAGATGTCATCTTCAGTCACCACAA
GCTAAGCGGTTGAGGAGTGAGACTGAGCAACAGGATTGAATTCTTTCAAC
TCCTTGAATTGCATCCAAGGCTTCTCCCAGACCTTAGCTTCAAAAAGTTT
CTTCTGACCTCCTTCGGGAGCCTCCAAGGTGATGTCGTACAGAGTCCCTG
AAACCACTTGCTGCTTCGCACTTACAACTTTTACAAATTGCAGATTTGAA
TTCTGCTTCTTGTTATGCTCATCCACAGCGAAGCGTGCGAGATTAACGAT
CTCCTGATTGTTGGCTGTTGCTTCAACGTTACGAACACCGCCCAATGTAG
CCATTGTTTGTTGAAGAGGATAGAGAACAAGATCAACAGGCAAGTGACCT
TTGCAAAGAGAAGAAATGGCCTTTTGAAGAAAGCTTATGAGCTTTCCGTT
CTTTGTGATGCTGAGGTTGCTCTCATCATTTTCTCCAATAGAGGAAAG
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