CN185933

Overview
NameCN185933
Unique NameCN185933
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN185933 vs. ExPASy Swiss-Prot
Match: FLC_ARATH (MADS-box protein FLOWERING LOCUS C OS=Arabidopsis thaliana GN=FLC PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 32/46 (69.57%), Postives = 40/46 (86.96%), Query Frame = 3 
Query:  561 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGK 698
            +KRIENK +RQVTF+KRRNGL++KA +LSVLCDA VAL++ S  GK
Sbjct:    8 IKRIENKSSRQVTFSKRRNGLIEKARQLSVLCDASVALLVVSASGK 53
[Close]
BLAST of CN185933 vs. ExPASy Swiss-Prot
Match: DEFA_ANTMA (Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 31/46 (67.39%), Postives = 41/46 (89.13%), Query Frame = 3 
Query:  561 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGK 698
            +KRIEN+ NRQVT++KRRNGL KKA+ELSVLCDA+V++I+ S+  K
Sbjct:    8 IKRIENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQK 53
The following BLAST results are available for this feature:
BLAST of CN185933 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
FLC_ARATH8.376e-1169.57MADS-box protein FLOWERING LOCUS C OS=Arabidopsis ... [more]
DEFA_ANTMA8.376e-1167.39Floral homeotic protein DEFICIENS OS=Antirrhinum m... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002B13_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002B13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185933 ID=CN185933; Name=CN185933; organism=Citrus sinensis; type=EST; length=698bp
CGGTTTTGTATATATATTAAACACCAAAGGTCATTTCAATTCTTTTTCAC
ACAGTTATAAAAGTTGCGCTGAGTTGCAGCTACTACCATAAATAATCGAC
ACATAACTTGCAAAAGATTAAAGAACCAAACTCATAAGTCCGGTTACATT
TGGTGTGAGAATCTGAACATGGTTATAGCTCCATTCTTATTGATACTGTC
TCTTTGTTTGATCCATTGCAAGCTACAGATGTCATCTTCAGTCACCACAA
GCTAAGCGGTTGAGGAGTGAGACTGAGCAACAGGATTGAATTCTTTCAAC
TCCTTGAATTGCATCCAAGGCTTCTCCCAGACCTTAGCTTCAAAAAGTTT
CTTCTGACCTCCTTCGGGAGCCTCCAAGGTGATGTCGTACAGAGTCCCTG
AAACCACTTGCTGCTTCGCACTTACAACTTTTACAAATTGCAGATTTGAA
TTCTGCTTCTTGTTATGCTCATCCACAGCGAAGCGTGCGAGATTAACGAT
CTCCTGATTGTTGGCTGTTGCTTCAACGTTACGAACACCGCCCAATGTAG
CCATTGTTTGTTGAAGAGGATAGAGAACAAGATCAACAGGCAAGTGACCT
TTGCAAAGAGAAGAAATGGCCTTTTGAAGAAAGCTTATGAGCTTTCCGTT
CTTTGTGATGCTGAGGTTGCTCTCATCATTTTCTCCAATAGAGGAAAG
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