DC900092

Overview
NameDC900092
Unique NameDC900092
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EF1A_THEGJ (Elongation factor 1-alpha OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=tuf PE=3 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.069e-61
Identity = 121/234 (51.71%), Postives = 157/234 (67.09%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSG------LTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIP 686
            GHRDF+KNMITG SQAD AVL++ +T G          QT+EHA LA TLG+  +I   NKMD     Y +  ++++  +V   LK +GY     P +PIS +EGDN++++S  + WYKGPTL+EALDQI EP +P DKPLR+P+QDVY I G+GTVPVGRVETGVL+ G +V F P+       +  EVKS+EMHHE L EA PGDN+GFN +     D+KRG VA ++   P
Sbjct:   92 GHRDFVKNMITGASQADAAVLVVAATDGVMP-------QTKEHAFLARTLGINHIIVAINKMDMVN--YDQKVFEKVKAQVEKLLKMLGYKD--FPVIPISAWEGDNVVKKSDKMPWYKGPTLIEALDQIPEPPKPIDKPLRIPIQDVYSIKGVGTVPVGRVETGVLRVGDVVIFEPASTIFHKPIQGEVKSIEMHHEPLQEAYPGDNIGFNVRGVGKNDIKRGDVAGHTTNPP 314          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EF1A_METMP (Elongation factor 1-alpha OS=Methanococcus maripaludis GN=tuf PE=3 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.069e-61
Identity = 121/236 (51.27%), Postives = 157/236 (66.53%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYL-KKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPPGGIHFT 707
            GHRDFIKNMITG SQAD AVL+++      ++GI    QTREH  L+ TLG+ Q+    NKMD  T  +S+A Y+E+ K +   L K VG+NPD I F+P++   GDN+ ++S N  WY GPTL + +D    P++PT  PLRLP+QDVY I G+GTVPVGRVETG++KPG  V F P+G   E+K+VEMHHE L  A PGDN+GFN +    KD+KRG V  ++   P     FT
Sbjct:   94 GHRDFIKNMITGASQADAAVLVVNVDDA--KSGIQP--QTREHVFLSRTLGITQLAVAINKMD--TVNFSEADYNEMKKMLGDQLLKMVGFNPDNIDFIPVASLLGDNVFKKSENTPWYNGPTLAQVIDGFQPPEKPTTLPLRLPIQDVYSITGVGTVPVGRVETGIIKPGDKVVFEPAGAVGEIKTVEMHHEQLPSAEPGDNIGFNVRGVGKKDIKRGDVLGHTTNPPTVAADFT 323          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EF1A_METM7 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=tuf PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.823e-61
Identity = 120/236 (50.85%), Postives = 156/236 (66.10%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYL-KKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPPGGIHFT 707
            GHRDFIKNMITG SQAD A+L+++      ++GI    QTREH  L+ TLG+ Q+    NKMD  T  +S+A Y+E+ K +   L K VG+NPD I FVP++   GDN+ ++S    WY GPTL E +D    P++PT  PLRLP+QDVY I G+GTVPVGRVETG+++PG  V F P+G   E+K+VEMHHE L  A PGDN+GFN +    KD+KRG V  ++   P     FT
Sbjct:   94 GHRDFIKNMITGASQADAAILVVNVDDA--KSGIQP--QTREHVFLSRTLGISQLAVAINKMD--TVNFSEADYNEMKKMLGDQLLKMVGFNPDNITFVPVASLHGDNVFKKSDKTPWYNGPTLAEVIDAFQPPEKPTTLPLRLPIQDVYSITGVGTVPVGRVETGIIRPGDKVIFEPAGAVGEIKTVEMHHEQLPSAEPGDNIGFNVRGVGKKDIKRGDVLGHTTNPPTVAADFT 323          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EF1A_THECE (Elongation factor 1-alpha OS=Thermococcus celer GN=tuf PE=3 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.381e-61
Identity = 118/234 (50.43%), Postives = 156/234 (66.67%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSG------LTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIP 686
            GHRDF+KNMITG SQAD AVL++  T G          QT+EHA LA TLG+  ++   NKMD     Y + ++  + ++V   L  +GY     P +PIS +EGDN++++S  + WY GPTL+EALDQ+ EP +PTDKPLR+P+QDVY I G+GTVPVGRVETGVL+ G +V F P+       +  EVKS+EMHHE + EALPGDN+GFN +     D+KRG VA ++   P
Sbjct:   92 GHRDFVKNMITGASQADAAVLVVAVTDGVMP-------QTKEHAFLARTLGINNILVAVNKMDMVN--YDEKKFKAVAEQVKKLLMMLGYK--NFPIIPISAWEGDNVVKKSDKMPWYNGPTLIEALDQMPEPPKPTDKPLRIPIQDVYSIKGVGTVPVGRVETGVLRVGDVVIFEPASTIFHKPIQGEVKSIEMHHEPMQEALPGDNIGFNVRGVGKNDIKRGDVAGHTNNPP 314          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EF1A_PYRIL (Elongation factor 1-alpha OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=tuf PE=3 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.381e-61
Identity = 118/228 (51.75%), Postives = 148/228 (64.91%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIP 686
            GHRDFIKNMI G SQAD A+ +I +  G FE  I   GQ REH  L  TLGV+Q++   NKMD     Y + RY++I  EVS  LK +GY+P KI F+P+S  +GDN+  +S+N  WY GPTLLEALD    P RP DKPLR+P+QDV+ I G GTV VGRVETGVLK G  V   P     +V+S+E HH  L +A PGDN+G N +  S +D++RG V      +P
Sbjct:  104 GHRDFIKNMIVGASQADAALFVISARPGEFETAIGPQGQGREHLFLIRTLGVQQIVVAVNKMDIVN--YDQKRYEQIKAEVSKLLKLLGYDPSKIHFIPVSAIKGDNVKTKSSNTPWYNGPTLLEALDTFQPPPRPVDKPLRMPIQDVFTITGAGTVVVGRVETGVLKVGDRVVIVPPAKVGDVRSIETHHMKLEQAQPGDNIGVNVRGISKEDVRRGDVLGKVDNVP 329          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EF1A_PYRHO (Elongation factor 1-alpha OS=Pyrococcus horikoshii GN=tuf PE=3 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.381e-61
Identity = 121/234 (51.71%), Postives = 157/234 (67.09%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSG------LTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIP 686
            GHRDF+KNMITG SQAD AVL++ +T G          QT+EHA LA TLG+K +I   NKMD     Y +  ++++  +V   LK +GY     P +P S + GDN++++S  + WY GPTL+EALDQI EP++P DKPLR+P+QDVY I G+GTVPVGRVETG LK G +V F P+       +  EVKS+EMHHE L EALPGDN+GFN +  S  D+KRG VA ++   P
Sbjct:   92 GHRDFVKNMITGASQADAAVLVVAATDGVMP-------QTKEHAFLARTLGIKHIIVTINKMDMVN--YDQKVFEKVKAQVEKLLKTLGYKD--FPVIPTSAWNGDNVVKKSDKMPWYNGPTLIEALDQIPEPEKPIDKPLRIPIQDVYSIKGVGTVPVGRVETGKLKVGDVVIFEPASTIFHKPIQGEVKSIEMHHEPLQEALPGDNIGFNVRGVSKNDIKRGDVAGHTDKPP 314          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EF1A_METBF (Elongation factor 1-alpha OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=tuf PE=3 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.381e-61
Identity = 114/224 (50.89%), Postives = 152/224 (67.86%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNS 674
            GHRDF+KNMITG SQAD AVL++ +  G          QT+EH  L+ TLG+ Q+I   NKMDA   +YS+ RY E+V++VS  LK +G+ P  IPFVP S F GDN++  S    WYKG T++EAL+ +  P++P+  PLR+P++D Y I GIGTVPVGRVETG +K G  V F P G   EVKS+EMHHE + +ALPGDN+G+N +     D++RG V  ++
Sbjct:   94 GHRDFVKNMITGASQADAAVLVVAAPDGVM-------AQTKEHIFLSRTLGINQLIVAINKMDAV--EYSEKRYKEVVEQVSGILKMIGFKPGDIPFVPTSAFYGDNVVNHSEKTPWYKGVTMMEALNNLKVPEKPSTLPLRIPVEDAYTISGIGTVPVGRVETGTMKKGDKVVFMPGGAAGEVKSIEMHHEEIPQALPGDNIGWNVRGIGKADVRRGDVCGHT 308          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EF1A_PYRAE (Elongation factor 1-alpha OS=Pyrobaculum aerophilum GN=tuf PE=3 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 4.061e-61
Identity = 115/228 (50.44%), Postives = 148/228 (64.91%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIP 686
            GHRDF+KNMI G SQAD A+ +I +  G FEA I   GQ REH  L  TLGV+Q++   NKMD     Y + RY+++  EVS  LK +GY+P KI F+P+S  +GDN+  +S+N  WY GPTLLE  D    P+RP DKPLR+P+QDV+ I G GTV VGRVETGVLK G  V   P     +V+S+E HH  L +A PGDN+G N +  + +D+KRG V      +P
Sbjct:  104 GHRDFVKNMIVGASQADAALFVISARPGEFEAAIGPQGQGREHLFLIRTLGVQQIVVAVNKMDVVN--YDQKRYEQVKAEVSKLLKLLGYDPSKIHFIPVSAIKGDNIKTKSSNTPWYTGPTLLEVFDSFQPPQRPVDKPLRMPIQDVFTITGAGTVVVGRVETGVLKVGDRVVIVPPAKVGDVRSIETHHMKLEQAQPGDNIGVNVRGIAKEDVKRGDVLGKPDNVP 329          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EF1A_PYRAB (Elongation factor 1-alpha OS=Pyrococcus abyssi GN=tuf PE=3 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 6.928e-61
Identity = 119/229 (51.97%), Postives = 155/229 (67.69%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSG------LTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASN 671
            GHRDF+KNMITG SQAD AVL++ +T G          QT+EHA LA TLG+K +I   NKMD     Y +  ++++  +V   L+ +GY     P +P S + GDN++++S  + WY GPTL+EALDQI EP++P DKPLR+P+QDVY I G+GTVPVGRVETG LK G +V F P+       +  EVKS+EMHHE L EALPGDN+GFN +  S  D+KRG VA +
Sbjct:   92 GHRDFVKNMITGASQADAAVLVVAATDGVMP-------QTKEHAFLARTLGIKHIIVTINKMDMVN--YDQKVFEKVKAQVEKLLRTLGYKD--FPVIPTSAWNGDNIVKKSDKMPWYNGPTLIEALDQIPEPEKPVDKPLRIPIQDVYSIKGVGTVPVGRVETGKLKVGDVVIFEPASTIFHKPIQGEVKSIEMHHEPLQEALPGDNIGFNVRGVSKNDIKRGDVAGH 309          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EF1A_METM6 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=tuf PE=3 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 6.928e-61
Identity = 120/236 (50.85%), Postives = 155/236 (65.68%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYL-KKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPPGGIHFT 707
            GHRDFIKNMITG SQAD A+L+++      ++GI    QTREH  L+ TLG+ Q+    NKMD  T  +S+A Y+E+ K +   L K VG+NP  I FVP++   GDN+ ++S    WY GPTL E +D    P++PT  PLRLP+QDVY I G+GTVPVGRVETG++KPG  V F P+G   E+K+VEMHHE L  A PGDN+GFN +    KD+KRG V  ++   P     FT
Sbjct:   94 GHRDFIKNMITGASQADAAILVVNVDDA--KSGIQP--QTREHVFLSRTLGISQLAVAINKMD--TVNFSEADYNEMKKMLGDQLLKMVGFNPANITFVPVASLHGDNVFKKSDRTPWYNGPTLAEVIDAFQPPEKPTTLPLRLPIQDVYSITGVGTVPVGRVETGIIKPGDKVIFEPAGAVGEIKTVEMHHEQLPSAEPGDNIGFNVRGVGKKDIKRGDVLGHTTNPPTVAADFT 323          
The following BLAST results are available for this feature:
BLAST of DC900092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_THEGJ1.069e-6151.71Elongation factor 1-alpha OS=Thermococcus gammatol... [more]
EF1A_METMP1.069e-6151.27Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_METM71.823e-6150.85Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_THECE2.381e-6150.43Elongation factor 1-alpha OS=Thermococcus celer GN... [more]
EF1A_PYRIL2.381e-6151.75Elongation factor 1-alpha OS=Pyrobaculum islandicu... [more]
EF1A_PYRHO2.381e-6151.71Elongation factor 1-alpha OS=Pyrococcus horikoshii... [more]
EF1A_METBF2.381e-6150.89Elongation factor 1-alpha OS=Methanosarcina barker... [more]
EF1A_PYRAE4.061e-6150.44Elongation factor 1-alpha OS=Pyrobaculum aerophilu... [more]
EF1A_PYRAB6.928e-6151.97Elongation factor 1-alpha OS=Pyrococcus abyssi GN=... [more]
EF1A_METM66.928e-6150.85Elongation factor 1-alpha OS=Methanococcus maripal... [more]

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Properties
Property NameValue
Genbank descriptionDC900092 VSS Citrus sinensis cDNA clone VS27V08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900092 ID=DC900092; Name=DC900092; organism=Citrus sinensis; type=EST; length=707bp
CTGGACATCGTGACTTTATTAAGAACATGATTACTGGTACTTCTCAGGCT
GATTGTGCTGTCCTTATCATCGACTCCACCACTGGTGGTTTTGAAGCTGG
TATCTCTAAGGATGGGCAGACCAGAGAGCACGCTCTACTTGCTTTCACCC
TTGGTGTGAAGCAAATGATTTGTTGCTGTAACAAGATGGATGCCACCACT
CCCAAGTATTCAAAGGCAAGATATGATGAAATTGTTAAGGAAGTCTCTTC
CTACTTGAAGAAGGTTGGCTACAACCCAGATAAGATTCCATTTGTCCCAA
TCTCTGGATTTGAGGGTGATAACATGATTGAGAGGTCCACAAACCTTGAC
TGGTACAAGGGCCCAACCCTTCTTGAAGCTCTTGACCAGATCAATGAACC
CAAGAGACCAACAGACAAGCCTCTCCGTCTCCCCCTTCAGGATGTCTACA
AGATTGGTGGTATTGGAACTGTCCCTGTTGGCCGTGTTGAAACTGGTGTA
CTCAAGCCCGGTATGATAGTCACATTCGGTCCATCTGGATTGACTACTGA
AGTTAAGTCAGTTGAGATGCACCATGAGTCTCTCCTGGAGGCACTTCCTG
GTGATAATGTGGGGTTCAACGNTAAGAATGNTTCAGTGAAGGATCTTAAG
CGTGGGTACGTTGCATCTAACTCCAGGATGATCCCGCCAGGGGGCATCCA
CTTCACC
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