DC900092

Overview
NameDC900092
Unique NameDC900092
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EF1A_CALMQ (Elongation factor 1-alpha OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=tuf PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.016e-60
Identity = 113/223 (50.67%), Postives = 149/223 (66.82%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASN 671
            GHRDF+KNMI G SQAD A+L++ +  G FE+G+   GQTREH  LA+TLG++ +I   NKMD     Y + RY++I  E+S  LK + Y+ +K+PF+P+S   GDN+  +S+N+ WY GP LLEALD I  P RP DKPLRLP+QDV+ I G GTV  GRVE+GV+K G  +   P     +V+S+E HH  L EA  GDNVG N +    +DLKRG V  +
Sbjct:  103 GHRDFVKNMIVGASQADAALLVVSARPGEFESGVGPQGQTREHLFLAWTLGIRNLIVAVNKMDVVN--YDQKRYEQIKGELSKILKILRYDVNKVPFIPVSAVRGDNIKVKSSNMPWYNGPVLLEALDAIEPPPRPIDKPLRLPIQDVFSITGAGTVITGRVESGVVKVGDTIVALPPAKVGDVRSIETHHMKLEEAKAGDNVGINVRGFERQDLKRGDVVGH 323          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EF1A_HALWD (Elongation factor 1-alpha OS=Haloquadratum walsbyi (strain DSM 16790) GN=tuf PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.633e-60
Identity = 120/228 (52.63%), Postives = 152/228 (66.67%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIP 686
            GHRDF+KNMITG SQAD AVL++ +  G          QTREH  LA TLG+ ++I   NKMD     YS+  Y+++  EV   LK+V +N +   ++PIS FEGDN+ E S N  W+ GP+LLEAL+ + EP+ PTD PLRLP+QDVY I GIGTVPVGRVETG + PG  V+F PS +  EVK+VEMHHE + +A PGDNVGFN +     D++RG V   S   P
Sbjct:   93 GHRDFVKNMITGASQADNAVLVVAADDGVAP-------QTREHVFLARTLGINELIIGVNKMDIVD--YSEETYEDVKTEVDKLLKQVQFNANDAKYIPISAFEGDNVAESSDNTSWFDGPSLLEALNNLPEPQPPTDAPLRLPIQDVYTISGIGTVPVGRVETGTVSPGDDVSFQPSDVGGEVKTVEMHHEEVDQAGPGDNVGFNVRGIGKDDIRRGDVCGPSSNAP 311          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EF1A_NATPD (Elongation factor 1-alpha OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=tuf PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.306e-59
Identity = 117/220 (53.18%), Postives = 150/220 (68.18%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYV 662
            GHRDF+KNMITG SQAD AVL++ +  G          QT+EH  LA TLG+ ++I   NKMD     Y + +Y  +V EV+  L++V +N +   F+P S FEGDN+ E S N  WY GP+LLEAL+ + EP+ PTD PLRLP+QDVY I GIGTVPVGRVETG+L  G  V+F PS ++ EVK+VEMHHE + +A PGDNVGFN +     D++RG V
Sbjct:   94 GHRDFVKNMITGASQADNAVLVVAADDG-------VQPQTQEHVFLARTLGIDELIIAVNKMDLVD--YDENKYKAVVDEVNQLLEQVRFNTEDAKFIPTSAFEGDNVSEASENTSWYDGPSLLEALNDLPEPQPPTDAPLRLPIQDVYTISGIGTVPVGRVETGILNTGDNVSFQPSDVSGEVKTVEMHHEEVPKAEPGDNVGFNVRGVGKDDIRRGDV 304          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EF1A_UNCMA (Elongation factor 1-alpha OS=Uncultured methanogenic archaeon RC-I GN=tuf PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 6.484e-59
Identity = 114/238 (47.90%), Postives = 154/238 (64.71%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPS----GLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPPGGIHF 704
            GHRDF+KNMITG SQAD A+L+  +  G  +       QT+EH  L+ TLG+ Q+I   NKMDA    Y + RY+E+ +EVS  L+ +G+ PD+IPF+P S F+G N+ + +    WY G T+LEAL+ + EP++PT  PLR+P+QDVY I GIG VPVGRVETG++K G  V F P     G   EVKS+EMHHE + +ALPGDN+GFN +      ++RG V  +    P   + F
Sbjct:   94 GHRDFVKNMITGASQADAAILVCAAPDGVMQ-------QTKEHIFLSKTLGINQLIIAVNKMDAIN--YDQKRYNEVKEEVSKILRMIGFKPDQIPFIPTSAFKGTNIAKHAEETPWYTGVTILEALNALKEPEKPTQLPLRVPIQDVYTISGIGLVPVGRVETGIMKKGDKVIFRPGIDGVGHAGEVKSIEMHHEEIPQALPGDNIGFNVRGIEKNLIRRGDVCGHVDKQPTVAVEF 322          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EF1A_HALSA (Elongation factor 1-alpha OS=Halobacterium salinarium GN=tuf PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 5.489e-58
Identity = 114/220 (51.82%), Postives = 146/220 (66.36%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYV 662
            GHRDF+KNMITG SQAD AVL++ +  G          QTREH  L+ TLG+ ++I   NKMD     Y +++Y+E+V  V     +VG+NPD   F+  S FEGDN+ + S N  WY GPTLLEAL+ +  P+ PTD  LRLP+QDVY I GIGTVPVGR+ETGV+  G  V+F PS +  EVK++EMHHE +  A PGDNVGFN +     D++RG V
Sbjct:   93 GHRDFVKNMITGASQADNAVLVVAADDGVAP-------QTREHVFLSRTLGIDELIVAVNKMDVVD--YDESKYNEVVSGVKDLFGQVGFNPDDAKFIATSAFEGDNVSDHSDNTPWYDGPTLLEALNGLPVPQPPTDADLRLPIQDVYTISGIGTVPVGRIETGVMNTGDNVSFQPSDVGGEVKTIEMHHEEVPNAEPGDNVGFNVRGIGKDDIRRGDV 303          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EF1A_HALS3 (Elongation factor 1-alpha OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=tuf PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 5.489e-58
Identity = 114/220 (51.82%), Postives = 146/220 (66.36%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYV 662
            GHRDF+KNMITG SQAD AVL++ +  G          QTREH  L+ TLG+ ++I   NKMD     Y +++Y+E+V  V     +VG+NPD   F+  S FEGDN+ + S N  WY GPTLLEAL+ +  P+ PTD  LRLP+QDVY I GIGTVPVGR+ETGV+  G  V+F PS +  EVK++EMHHE +  A PGDNVGFN +     D++RG V
Sbjct:   93 GHRDFVKNMITGASQADNAVLVVAADDGVAP-------QTREHVFLSRTLGIDELIVAVNKMDVVD--YDESKYNEVVSGVKDLFGQVGFNPDDAKFIATSAFEGDNVSDHSDNTPWYDGPTLLEALNGLPVPQPPTDADLRLPIQDVYTISGIGTVPVGRIETGVMNTGDNVSFQPSDVGGEVKTIEMHHEEVPNAEPGDNVGFNVRGIGKDDIRRGDV 303          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EF1A_HALMA (Elongation factor 1-alpha OS=Haloarcula marismortui GN=tuf PE=1 SV=2)

HSP 1 Score: 223.402 bits (568), Expect = 9.363e-58
Identity = 113/220 (51.36%), Postives = 149/220 (67.73%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYV 662
            GHRDF+KNMITG SQAD AVL++ +  G          QT+EH  LA TLG+ ++I   NKMD     Y ++ Y ++V+EV   L +V ++ +   F+P+S FEGDN+ E S +  WY G  LLEAL+++  P+ PTD PLRLP+QDVY I GIGTVPVGRVETG+L  G  V+F PS ++ EVK+VEMHHE + +A PGDNVGFN +     D++RG V
Sbjct:   93 GHRDFVKNMITGASQADNAVLVVAADDG-------VQPQTQEHVFLARTLGIGELIVAVNKMDLVD--YGESEYKQVVEEVKDLLTQVRFDSENAKFIPVSAFEGDNIAEESEHTGWYDGEILLEALNELPAPEPPTDAPLRLPIQDVYTISGIGTVPVGRVETGILNTGDNVSFQPSDVSGEVKTVEMHHEEVPKAEPGDNVGFNVRGVGKDDIRRGDV 303          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EF1A_NANEQ (Elongation factor 1-alpha OS=Nanoarchaeum equitans GN=tuf PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.547e-52
Identity = 108/228 (47.37%), Postives = 146/228 (64.04%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKI-PFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG----MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASN 671
            GH+DF+KNMITG SQAD AVL++ +  G  E       QT+EHA+LA T G+ Q+I   NKMD     Y + R++E+  +V   LK +GY  + I   +P + F GDN++++S  + WY GPTL EALD +  P+ P D PLR+P+Q    I GIGTV  GRVETG LKPG    ++ +  P+G   EVKS+EMHH+ L EALPGDN+GF+ +     D+ RG VA +
Sbjct:   94 GHKDFVKNMITGASQADAAVLVVAADDGVQE-------QTQEHAVLARTFGINQIIVYINKMDKVN--YDQKRFEEVKNQVLKLLKMIGYKDENIIAVIPGASFHGDNVVKKSDKMPWYNGPTLYEALDMLKPPQLPVDLPLRIPIQSALSIKGIGTVLTGRVETGKLKPGDKIIVLPSKKPNGAIGEVKSIEMHHKPLEEALPGDNIGFSVRGIEKGDVMRGDVAGH 312          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: HBS1L_PONAB (HBS1-like protein OS=Pongo abelii GN=HBS1L PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.097e-41
Identity = 88/223 (39.46%), Postives = 126/223 (56.50%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLD---WYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYV 662
            GH+DFI NMITG +QAD AVL++D++ G FEAG    GQTREH LL  +LGV Q+    NKMD     + + R+ EI  ++  +LK+ G+    + F+P SG  G+N+I RS + +   WYKG  LLE +D    P+R  DKP RL + DV+K  G G    G++E G ++ G  +   P   T  VK + +H E +  A  GD+V        +  +  G +
Sbjct:  347 GHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQV--NWQQERFQEITGKLGHFLKQAGFKESDVAFIPTSGLSGENLITRSRSSELTKWYKGLCLLEQIDSFKPPQRSIDKPFRLCVSDVFKDQGSGFCITGKIEAGYIQTGDRLLAMPPNETCTVKGITLHDEPVDWAAAGDHVSLTLVGMDIIKINVGCI 567          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: HBS1L_HUMAN (HBS1-like protein OS=Homo sapiens GN=HBS1L PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.963e-41
Identity = 88/223 (39.46%), Postives = 126/223 (56.50%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLD---WYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYV 662
            GH+DFI NMITG +QAD AVL++D++ G FEAG    GQTREH LL  +LGV Q+    NKMD     + + R+ EI  ++  +LK+ G+    + F+P SG  G+N+I RS + +   WYKG  LLE +D    P+R  DKP RL + DV+K  G G    G++E G ++ G  +   P   T  VK + +H E +  A  GD+V        +  +  G +
Sbjct:  347 GHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQV--NWQQERFQEITGKLGHFLKQAGFKESDVGFIPTSGLSGENLITRSQSSELTKWYKGLCLLEQIDSFKPPQRSIDKPFRLCVSDVFKDQGSGFCITGKIEAGYIQTGDRLLAMPPNETCTVKGITLHDEPVDWAAAGDHVSLTLVGMDIIKINVGCI 567          
The following BLAST results are available for this feature:
BLAST of DC900092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_CALMQ2.016e-6050.67Elongation factor 1-alpha OS=Caldivirga maquilinge... [more]
EF1A_HALWD2.633e-6052.63Elongation factor 1-alpha OS=Haloquadratum walsbyi... [more]
EF1A_NATPD1.306e-5953.18Elongation factor 1-alpha OS=Natronomonas pharaoni... [more]
EF1A_UNCMA6.484e-5947.90Elongation factor 1-alpha OS=Uncultured methanogen... [more]
EF1A_HALSA5.489e-5851.82Elongation factor 1-alpha OS=Halobacterium salinar... [more]
EF1A_HALS35.489e-5851.82Elongation factor 1-alpha OS=Halobacterium salinar... [more]
EF1A_HALMA9.363e-5851.36Elongation factor 1-alpha OS=Haloarcula marismortu... [more]
EF1A_NANEQ1.547e-5247.37Elongation factor 1-alpha OS=Nanoarchaeum equitans... [more]
HBS1L_PONAB6.097e-4139.46HBS1-like protein OS=Pongo abelii GN=HBS1L PE=2 SV... [more]
HBS1L_HUMAN7.963e-4139.46HBS1-like protein OS=Homo sapiens GN=HBS1L PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionDC900092 VSS Citrus sinensis cDNA clone VS27V08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900092 ID=DC900092; Name=DC900092; organism=Citrus sinensis; type=EST; length=707bp
CTGGACATCGTGACTTTATTAAGAACATGATTACTGGTACTTCTCAGGCT
GATTGTGCTGTCCTTATCATCGACTCCACCACTGGTGGTTTTGAAGCTGG
TATCTCTAAGGATGGGCAGACCAGAGAGCACGCTCTACTTGCTTTCACCC
TTGGTGTGAAGCAAATGATTTGTTGCTGTAACAAGATGGATGCCACCACT
CCCAAGTATTCAAAGGCAAGATATGATGAAATTGTTAAGGAAGTCTCTTC
CTACTTGAAGAAGGTTGGCTACAACCCAGATAAGATTCCATTTGTCCCAA
TCTCTGGATTTGAGGGTGATAACATGATTGAGAGGTCCACAAACCTTGAC
TGGTACAAGGGCCCAACCCTTCTTGAAGCTCTTGACCAGATCAATGAACC
CAAGAGACCAACAGACAAGCCTCTCCGTCTCCCCCTTCAGGATGTCTACA
AGATTGGTGGTATTGGAACTGTCCCTGTTGGCCGTGTTGAAACTGGTGTA
CTCAAGCCCGGTATGATAGTCACATTCGGTCCATCTGGATTGACTACTGA
AGTTAAGTCAGTTGAGATGCACCATGAGTCTCTCCTGGAGGCACTTCCTG
GTGATAATGTGGGGTTCAACGNTAAGAATGNTTCAGTGAAGGATCTTAAG
CGTGGGTACGTTGCATCTAACTCCAGGATGATCCCGCCAGGGGGCATCCA
CTTCACC
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