DC900092

Overview
NameDC900092
Unique NameDC900092
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: HBS1L_MOUSE (HBS1-like protein OS=Mus musculus GN=Hbs1l PE=1 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 1.358e-40
Identity = 87/223 (39.01%), Postives = 124/223 (55.61%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLD---WYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYV 662
            GH+DFI NMITG +QAD AVL++D++ G FEAG    GQTREH LL  +LGV Q+    NKMD     + + R+ EI  ++  +LK+ G+    + F+P SG  G+N+  RS + D   WYKG  LLE +D    P+R  DKP RL + DV+K  G G    G++E G ++ G  +   P   T   K + +H E +  A  GD+V        +  +  G +
Sbjct:  345 GHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQV--NWQQERFQEITGKLGHFLKQAGFKESDVAFIPTSGLSGENLTARSQSSDLTTWYKGMCLLEQIDSFKPPQRSIDKPFRLCVSDVFKDQGSGFCVTGKIEAGYIQTGDRLLAMPPNETCTAKGITLHDEPVDWAAAGDHVNLTLVGMDIIKINVGCI 565          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: HBS1L_BOVIN (HBS1-like protein OS=Bos taurus GN=HBS1L PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.358e-40
Identity = 87/223 (39.01%), Postives = 125/223 (56.05%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLD---WYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYV 662
            GH+DFI NMITG +QAD AVL++D++ G FEAG    GQTREH LL  +LGV Q+    NKMD     + + R+ EI  ++  +LK+ G+    + F+P SG  G+N+I RS + +   WYKG  LLE +D    P+R  DKP RL + DV+K  G G    G++E G ++ G  +   P   T   K + +H E +  A  GD+V        +  +  G +
Sbjct:  349 GHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQV--NWQQERFQEITGKLGHFLKQAGFKESDVAFIPTSGLSGENLITRSQSSELTKWYKGLCLLEQIDSFKPPQRSIDKPFRLCVSDVFKDQGSGFCVTGKIEAGYIQTGDRLLAMPPNETCTAKGITLHDEPVDWAAAGDHVSLTLVGMDIIKINVGCI 569          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: HBS1L_RAT (HBS1-like protein OS=Rattus norvegicus GN=Hbs1l PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.774e-40
Identity = 87/223 (39.01%), Postives = 124/223 (55.61%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLD---WYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYV 662
            GH+DFI NMITG +QAD AVL++D++ G FEAG    GQTREH LL  +LGV Q+    NKMD     + + R+ EI  ++  +LK+ G+    + F+P SG  G+N+  RS + D   WYKG  LLE +D    P+R  DKP RL + DV+K  G G    G++E G ++ G  +   P   T   K + +H E +  A  GD+V        +  +  G +
Sbjct:  342 GHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQV--NWQQERFQEITGKLGHFLKQAGFKESDVAFIPTSGLSGENLTSRSQSSDLTKWYKGLCLLEQIDSFKPPQRSIDKPFRLCVSDVFKDQGSGFCVTGKIEAGYVQTGDRLLAMPPNETCTAKGITLHDEPVDWAAAGDHVSLTLVGMDIIKINVGCI 562          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: ERF3A_MOUSE (Eukaryotic peptide chain release factor GTP-binding subunit ERF3A OS=Mus musculus GN=Gspt1 PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.562e-39
Identity = 89/221 (40.27%), Postives = 125/221 (56.56%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDK-IPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYV 662
            GH+ F+ NMI G SQAD AVL+I +  G FE G  K GQTREHA+LA T GVK +I   NKMD  T  +S  RY+E  +++  +LKKVG+NP K I F+P SG  G N+ E+S    WY G   +  LD +    R  D P+RLP+ D YK   +GTV +G++E+G +  G  +   P+    EV  +           PG+N+    K    +++  G++
Sbjct:  161 GHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSDFCPWYIGLPFIPYLDNLPNFNRSVDGPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNKHNVEVLGILSDDVETDSVAPGENLKIRLKGIEEEEILPGFI 379          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: ERF3A_HUMAN (Eukaryotic peptide chain release factor GTP-binding subunit ERF3A OS=Homo sapiens GN=GSPT1 PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.346e-39
Identity = 89/221 (40.27%), Postives = 125/221 (56.56%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDK-IPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYV 662
            GH+ F+ NMI G SQAD AVL+I +  G FE G  K GQTREHA+LA T GVK +I   NKMD  T  +S  RY+E  +++  +LKKVG+NP K I F+P SG  G N+ E+S    WY G   +  LD +    R  D P+RLP+ D YK   +GTV +G++E+G +  G  +   P+    EV  +           PG+N+    K    +++  G++
Sbjct:  161 GHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSDFCPWYIGLPFIPYLDNLPNFNRSVDGPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNKHNVEVLGILSDDVETDTVAPGENLKIRLKGIEEEEILPGFI 379          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: ERF3B_MOUSE (Eukaryotic peptide chain release factor GTP-binding subunit ERF3B OS=Mus musculus GN=Gspt2 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.660e-38
Identity = 88/221 (39.82%), Postives = 126/221 (57.01%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDK-IPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYV 662
            GH+ F+ NMI G SQAD AVL+I +  G FE G  K GQTREHA+LA T GVK +I   NKMD  T  +S  RY+E  +++  +LKKVG++P K I F+P SG  G N+ E+S    WY G   +  LD +    R  D P+RLP+ D YK   +GTV +G++E+G +  G  +   P+  + EV  +           PG+N+    K    +++  G++
Sbjct:  294 GHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKYLIVLINKMDDPTVDWSSERYEECKEKLVPFLKKVGFSPKKDIHFMPCSGLTGANIKEQSDFCPWYTGLPFIPYLDSLPNFNRSIDGPIRLPIVDKYK--DMGTVVLGKLESGSIFKGQQLVMMPNKHSVEVLGIVSDDAETDFVAPGENLKIRLKGIEEEEILPGFI 512          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: ERF3_YEAST (Eukaryotic peptide chain release factor GTP-binding subunit OS=Saccharomyces cerevisiae GN=SUP35 PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.169e-38
Identity = 85/229 (37.12%), Postives = 132/229 (57.64%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYN-PDKIPFVPISGFEGDNMIER--STNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLE-ALPGDNVGFNXKNXSVKDLKRGYVASNSR 677
            GH+ ++  MI G SQAD  VL+I +  G +E G  + GQTREHALLA T GV +M+   NKMD  T  +SK RYD+ V  VS++L+ +GYN    + F+P+SG+ G N+ +        WY GPTLLE LD +N   R  + P  LP+    K+  +GT+  G++E+G +K G      P+    E++++    E+ ++ A+ G+ V    K    +D+  G+V ++ +
Sbjct:  347 GHKMYVSEMIGGASQADVGVLVISARKGEYETGFERGGQTREHALLAKTQGVNKMVVVVNKMDDPTVNWSKERYDQCVSNVSNFLRAIGYNIKTDVVFMPVSGYSGANLKDHVDPKECPWYTGPTLLEYLDTMNHVDRHINAPFMLPI--AAKMKDLGTIVEGKIESGHIKKGQSTLLMPNKTAVEIQNIYNETENEVDMAMCGEQVKLRIKGVEEEDISPGFVLTSPK 573          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: ERF3B_PONAB (Eukaryotic peptide chain release factor GTP-binding subunit ERF3B OS=Pongo abelii GN=GSPT2 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.699e-38
Identity = 88/221 (39.82%), Postives = 125/221 (56.56%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDK-IPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYV 662
            GH+ F+ NMI G SQAD AVL+I +  G FE G  K GQTREHA+LA T GVK +I   NKMD  T  +S  RY+E  +++  +LKKVG++P K I F+P SG  G N+ E+S    WY G   +  LD +    R  D P+RLP+ D YK   +GTV +G++E+G +  G  +   P+    EV  +           PG+N+    K    +++  G++
Sbjct:  290 GHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSIERYEECKEKLVPFLKKVGFSPKKDIHFMPCSGLTGANVKEQSDFCPWYTGLPFIPYLDNLPNFNRSIDGPIRLPIVDKYK--DMGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGILSDDTETDFVAPGENLKIRLKGIEEEEILPGFI 508          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: ERF3B_HUMAN (Eukaryotic peptide chain release factor GTP-binding subunit ERF3B OS=Homo sapiens GN=GSPT2 PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 3.699e-38
Identity = 88/221 (39.82%), Postives = 125/221 (56.56%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDK-IPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYV 662
            GH+ F+ NMI G SQAD AVL+I +  G FE G  K GQTREHA+LA T GVK +I   NKMD  T  +S  RY+E  +++  +LKKVG++P K I F+P SG  G N+ E+S    WY G   +  LD +    R  D P+RLP+ D YK   +GTV +G++E+G +  G  +   P+    EV  +           PG+N+    K    +++  G++
Sbjct:  290 GHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSIERYEECKEKLVPFLKKVGFSPKKDIHFMPCSGLTGANIKEQSDFCPWYTGLPFIPYLDNLPNFNRSIDGPIRLPIVDKYK--DMGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGILSDDTETDFVAPGENLKIRLKGIEEEEILPGFI 508          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: HBS1_SCHPO (Elongation factor 1 alpha-like protein OS=Schizosaccharomyces pombe GN=hbs1 PE=2 SV=4)

HSP 1 Score: 156.762 bits (395), Expect = 1.076e-37
Identity = 94/227 (41.41%), Postives = 132/227 (58.15%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYL-KKVGYNPDKIPFVPISGFEGDNMIERSTN--LDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHE-SLLEALPGDNVGFNXKNXSVKDLKRGYVASN 671
            GHRDFI  MI G S AD AVL++DS+   FE G  ++GQTREHA L   LG+ +++   NK+D  +  +S+ R+ EI   VS +L K VG+    + FVPIS   G N+I++ ++    WYKGPTLL ALDQ+  P++P  KPLRL + DVY+     TV  GRVE G ++   ++    S     VK+V  + + S   A+ GD V     +  V  L+ G + SN
Sbjct:  264 GHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMS--WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVPPEKPYRKPLRLSIDDVYRSPRSVTV-TGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRNSDPSSTWAVAGDTVTLQLADIEVNQLRPGDILSN 487          
The following BLAST results are available for this feature:
BLAST of DC900092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HBS1L_MOUSE1.358e-4039.01HBS1-like protein OS=Mus musculus GN=Hbs1l PE=1 SV... [more]
HBS1L_BOVIN1.358e-4039.01HBS1-like protein OS=Bos taurus GN=HBS1L PE=2 SV=1[more]
HBS1L_RAT1.774e-4039.01HBS1-like protein OS=Rattus norvegicus GN=Hbs1l PE... [more]
ERF3A_MOUSE2.562e-3940.27Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3A_HUMAN3.346e-3940.27Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3B_MOUSE1.660e-3839.82Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_YEAST2.169e-3837.12Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3B_PONAB3.699e-3839.82Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3B_HUMAN3.699e-3839.82Eukaryotic peptide chain release factor GTP-bindin... [more]
HBS1_SCHPO1.076e-3741.41Elongation factor 1 alpha-like protein OS=Schizosa... [more]

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Properties
Property NameValue
Genbank descriptionDC900092 VSS Citrus sinensis cDNA clone VS27V08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900092 ID=DC900092; Name=DC900092; organism=Citrus sinensis; type=EST; length=707bp
CTGGACATCGTGACTTTATTAAGAACATGATTACTGGTACTTCTCAGGCT
GATTGTGCTGTCCTTATCATCGACTCCACCACTGGTGGTTTTGAAGCTGG
TATCTCTAAGGATGGGCAGACCAGAGAGCACGCTCTACTTGCTTTCACCC
TTGGTGTGAAGCAAATGATTTGTTGCTGTAACAAGATGGATGCCACCACT
CCCAAGTATTCAAAGGCAAGATATGATGAAATTGTTAAGGAAGTCTCTTC
CTACTTGAAGAAGGTTGGCTACAACCCAGATAAGATTCCATTTGTCCCAA
TCTCTGGATTTGAGGGTGATAACATGATTGAGAGGTCCACAAACCTTGAC
TGGTACAAGGGCCCAACCCTTCTTGAAGCTCTTGACCAGATCAATGAACC
CAAGAGACCAACAGACAAGCCTCTCCGTCTCCCCCTTCAGGATGTCTACA
AGATTGGTGGTATTGGAACTGTCCCTGTTGGCCGTGTTGAAACTGGTGTA
CTCAAGCCCGGTATGATAGTCACATTCGGTCCATCTGGATTGACTACTGA
AGTTAAGTCAGTTGAGATGCACCATGAGTCTCTCCTGGAGGCACTTCCTG
GTGATAATGTGGGGTTCAACGNTAAGAATGNTTCAGTGAAGGATCTTAAG
CGTGGGTACGTTGCATCTAACTCCAGGATGATCCCGCCAGGGGGCATCCA
CTTCACC
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