DC900092

Overview
NameDC900092
Unique NameDC900092
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_CAMHC (Elongation factor Tu OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=tuf PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.409e-29
Identity = 86/234 (36.75%), Postives = 125/234 (53.42%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWY-KGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D++KNMITG +Q D A+L+I ST G          QTREH LLA  +GV  ++   NK D           + + +EV   LK+ G+  D+IP +  S  +     +   + +W  K   L++A+D  I  PKR TDK   +P++D++ I G GTV  GRVE G++K G    +V   P+  TT V  VEM  + L E   GDNVG   +  + +D++RG V +  + I P
Sbjct:   84 GHADYVKNMITGAAQMDGAILVIASTDGPM-------AQTREHILLARQVGVPYIVVFLNKTDMVD---DPELIELVEEEVKDLLKEYGFPGDEIPIIKGSALKALEEAKAGGDGEWSAKIMELMDAVDSYIPTPKRDTDKDFLMPIEDIFSISGRGTVVTGRVEKGIVKVGDTVELVGIKPT-QTTTVTGVEMFRKELDEGEAGDNVGVLLRGTAKEDVERGMVLAKPKSITP 306          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_AQUPY (Elongation factor Tu OS=Aquifex pyrophilus GN=tuf PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.403e-29
Identity = 84/225 (37.33%), Postives = 117/225 (52.00%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKG-PTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYV 662
            GH D+IKNMITG +Q D A+L++ +  G          QTREH LLA  + V  ++   NK D       +   + +  EV   L K  Y  D++P +  S       +E+++   W      LL A+D+ I  P+R  DKP  +P++DV+ I G GTV  GRVE GVL+PG    IV      L T   S+EM  + L EALPGDN+G   +     D++RG V
Sbjct:   88 GHADYIKNMITGAAQMDGAILVVSAADGPMP-------QTREHVLLARQVNVPYIVVFMNKCDMVD---DEELLELVELEVRELLSKYEYPGDEVPVIRGSALGALQELEQNSPGKWVGSIKELLNAMDEYIPTPEREVDKPFLMPIEDVFSISGRGTVVTGRVERGVLRPGDEVEIVGLREEPLKTVATSIEMFRKVLDEALPGDNIGVLLRGVGKDDVERGQV 302          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_FERIS (Elongation factor Tu OS=Fervidobacterium islandicum GN=tuf PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.139e-29
Identity = 85/233 (36.48%), Postives = 120/233 (51.50%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGM---IVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  + V  MI   NK+D   P+      D +  EV   L K  +  D++P V  S  +         +  +     LL+A+D    +P R  DKP  +P++DV+ I G GTV  GR+E GV+KPG+   I+        T + SVEM  + L EA+ GDNVG   +  S  +++RG V +    I P
Sbjct:   84 GHADYIKNMITGAAQMDGAILVLAATDGPMP-------QTREHVLLARQVNVPAMIVFINKVDMVDPEL----VDLVEMEVRDLLSKYEFPGDEVPVVRGSALKAIEAPNDPNDPAYKPIKELLDAMDTYFPDPVREVDKPFLMPIEDVFSITGRGTVVTGRIERGVIKPGVEAEIIGMSYEIKKTVITSVEMFRKELDEAIAGDNVGCLLRGSSKDEVERGQVLAKPGSITP 305          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: HBS1_YEAST (Elongation factor 1 alpha-like protein OS=Saccharomyces cerevisiae GN=HBS1 PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 4.099e-29
Identity = 83/243 (34.16%), Postives = 129/243 (53.09%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNM--IERSTNL-DWYKGPTLLEALDQI-------NEPKRPTDKPLRLPLQDV--YKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEM--------HHESLLEALPGDNVGFNXKNXSVKDLKRGYVASN 671
            GHRDF+ N I G SQAD A+L +D +T  FE+G   DGQT+EH LLA +LG+  +I   NKMD     +S+ R++EI  ++  YL  +G+  D I +VPISGF G+ +  IE +  +  WY GP L+  L+         NE     D  L   L+ +   K      +  G++E+G ++PG  +T  PS  +  V  +++        +HE    A+ GD V    +    +D++ G +A++
Sbjct:  254 GHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMD--NVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAAS 494          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_ANATD (Elongation factor Tu OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=tuf PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.354e-29
Identity = 83/236 (35.17%), Postives = 119/236 (50.42%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINE----PKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D++KNMITG +Q D A+L++ +  G          QTREH LLA  + V  ++   NK+D           + +  EV   L K GY  D++P V  S  +      +  N   Y+   +LE +D +++    P+R  DKP  +P++DV+ I G GTV  GRVE G LK G    IV F P    T V  +EM  + L EA+ GDNVG   +     +++RG V +    I P
Sbjct:   84 GHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVNVPYIVVFLNKVDMVD---DPELIELVEMEVRELLSKYGYPGDEVPIVKGSALKALESTSQDPNAPEYQ--CILELMDAVDKYIPTPQRDIDKPFLMPIEDVFSITGRGTVVTGRVERGTLKTGEEVEIVGFAPEPRKTVVTGIEMFRKVLDEAVAGDNVGCLLRGIQKNEVERGQVLAKPGTIKP 307          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_CALS8 (Elongation factor Tu OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=tuf PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.132e-29
Identity = 83/236 (35.17%), Postives = 119/236 (50.42%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINE----PKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D++KNMITG +Q D A+L++ +  G          QTREH LLA  + V  ++   NK+D           + +  EV   L K GY  D++P V  S  +      +  N   Y+   +LE +D +++    P+R  DKP  +P++DV+ I G GTV  GRVE G LK G    IV F P    T V  +EM  + L EA+ GDNVG   +     +++RG V +    I P
Sbjct:   84 GHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVNVPYIVVFLNKVDMVD---DPELIELVEMEVRELLSKYGYPGDEVPIVKGSALKALESPSQDPNAPEYQ--CILELMDVVDKYIPTPQRDVDKPFLMPIEDVFSITGRGTVVTGRVERGTLKTGEEVEIVGFAPEPRKTVVTGIEMFRKVLDEAVAGDNVGCLLRGIQKNEVERGQVLAKPGTIKP 307          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_SULMW (Elongation factor Tu OS=Sulcia muelleri (strain GWSS) GN=tuf PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.532e-28
Identity = 84/235 (35.74%), Postives = 121/235 (51.49%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKG-PTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D++KNM+TG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK+D    K       E+V+ E+   L K  Y+ + IP +     +G  +   +    W K   TL++ +D  I EP R  DKP  +P++DV+ I G GTV  GR+ETG +  G    I+  G   L + V  VEM  + L +   GDNVG   +    KD++RG V S    I P
Sbjct:   84 GHADYVKNMVTGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVPNLVVFMNKVDQVDDK----EILELVEIEIRELLSKYEYDGENIPII-----QGSALGALNGEKKWEKQIETLMKTVDNYIKEPIRNIDKPFLMPIEDVFTITGRGTVATGRIETGTINTGDSIDIIGMGIDKLNSIVTGVEMFRKILDKGQAGDNVGLLLRGIEKKDIRRGMVISKPGYITP 302          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_FERNB (Elongation factor Tu OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=tuf PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.532e-28
Identity = 83/233 (35.62%), Postives = 117/233 (50.21%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGM---IVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  + V  MI   NK+D           D +  EV   L K  +  D++P +  S  +         + D      LL+A+D    +P R  DKP  +P++DV+ I G GTV  GR+E GV+KPG+   I+        T + SVEM  + L EA+ GDNVG   +     +++RG V +    I P
Sbjct:   84 GHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVNVPAMIVFINKVDMVD---DPELVDLVEMEVRDLLSKYEFPGDELPVIRGSALKAVEAPNDPNHPDLKAIKELLDAMDSYFPDPVREVDKPFLMPVEDVFTITGRGTVVTGRIERGVIKPGVEAEIIGMSYETKKTVITSVEMFRKELDEAMAGDNVGCLLRGVDKDEVERGQVIAKPGSITP 306          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_THESQ (Elongation factor Tu OS=Thermotoga sp. (strain RQ2) GN=tuf PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.010e-27
Identity = 87/234 (37.18%), Postives = 118/234 (50.43%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKG-PTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  + V  MI   NK D           D +  EV   L + GY  D++P +  S  +         N + YK    LL+A+D  I EP+R  DKP  +P++DV+ I G GTV  GR+E G +KPG    I+        T V SVEM  + L E + GDNVG   +     +++RG V +    I P
Sbjct:   84 GHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVEVPYMIVFINKTDMVD---DPELIDLVEMEVRDLLSQYGYPGDEVPVIRGSALKAVEA-PNDPNHEAYKPIQELLDAMDNYIPEPQREVDKPFLMPIEDVFSITGRGTVVTGRIERGRIKPGDEVEIIGLSYEIRKTVVTSVEMFRKELDEGIAGDNVGCLLRGIDKDEVERGQVLAAPGSIKP 306          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_THEP1 (Elongation factor Tu OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=tuf PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.010e-27
Identity = 87/234 (37.18%), Postives = 118/234 (50.43%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKG-PTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  + V  MI   NK D           D +  EV   L + GY  D++P +  S  +         N + YK    LL+A+D  I EP+R  DKP  +P++DV+ I G GTV  GR+E G +KPG    I+        T V SVEM  + L E + GDNVG   +     +++RG V +    I P
Sbjct:   84 GHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVEVPYMIVFINKTDMVD---DPELIDLVEMEVRDLLSQYGYPGDEVPVIRGSALKAVEA-PNDPNHEAYKPIQELLDAMDNYIPEPQREVDKPFLMPIEDVFSITGRGTVVTGRIERGRIKPGDEVEIIGLSYEIRKTVVTSVEMFRKELDEGIAGDNVGCLLRGIDKDEVERGQVLAAPGSIKP 306          
The following BLAST results are available for this feature:
BLAST of DC900092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_CAMHC1.409e-2936.75Elongation factor Tu OS=Campylobacter hominis (str... [more]
EFTU_AQUPY2.403e-2937.33Elongation factor Tu OS=Aquifex pyrophilus GN=tuf ... [more]
EFTU_FERIS3.139e-2936.48Elongation factor Tu OS=Fervidobacterium islandicu... [more]
HBS1_YEAST4.099e-2934.16Elongation factor 1 alpha-like protein OS=Saccharo... [more]
EFTU_ANATD5.354e-2935.17Elongation factor Tu OS=Anaerocellum thermophilum ... [more]
EFTU_CALS89.132e-2935.17Elongation factor Tu OS=Caldicellulosiruptor sacch... [more]
EFTU_SULMW4.532e-2835.74Elongation factor Tu OS=Sulcia muelleri (strain GW... [more]
EFTU_FERNB4.532e-2835.62Elongation factor Tu OS=Fervidobacterium nodosum (... [more]
EFTU_THESQ1.010e-2737.18Elongation factor Tu OS=Thermotoga sp. (strain RQ2... [more]
EFTU_THEP11.010e-2737.18Elongation factor Tu OS=Thermotoga petrophila (str... [more]

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Properties
Property NameValue
Genbank descriptionDC900092 VSS Citrus sinensis cDNA clone VS27V08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900092 ID=DC900092; Name=DC900092; organism=Citrus sinensis; type=EST; length=707bp
CTGGACATCGTGACTTTATTAAGAACATGATTACTGGTACTTCTCAGGCT
GATTGTGCTGTCCTTATCATCGACTCCACCACTGGTGGTTTTGAAGCTGG
TATCTCTAAGGATGGGCAGACCAGAGAGCACGCTCTACTTGCTTTCACCC
TTGGTGTGAAGCAAATGATTTGTTGCTGTAACAAGATGGATGCCACCACT
CCCAAGTATTCAAAGGCAAGATATGATGAAATTGTTAAGGAAGTCTCTTC
CTACTTGAAGAAGGTTGGCTACAACCCAGATAAGATTCCATTTGTCCCAA
TCTCTGGATTTGAGGGTGATAACATGATTGAGAGGTCCACAAACCTTGAC
TGGTACAAGGGCCCAACCCTTCTTGAAGCTCTTGACCAGATCAATGAACC
CAAGAGACCAACAGACAAGCCTCTCCGTCTCCCCCTTCAGGATGTCTACA
AGATTGGTGGTATTGGAACTGTCCCTGTTGGCCGTGTTGAAACTGGTGTA
CTCAAGCCCGGTATGATAGTCACATTCGGTCCATCTGGATTGACTACTGA
AGTTAAGTCAGTTGAGATGCACCATGAGTCTCTCCTGGAGGCACTTCCTG
GTGATAATGTGGGGTTCAACGNTAAGAATGNTTCAGTGAAGGATCTTAAG
CGTGGGTACGTTGCATCTAACTCCAGGATGATCCCGCCAGGGGGCATCCA
CTTCACC
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