DC900092

Overview
NameDC900092
Unique NameDC900092
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_SCHPO (Elongation factor Tu, mitochondrial OS=Schizosaccharomyces pombe GN=tuf1 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.010e-27
Identity = 84/233 (36.05%), Postives = 120/233 (51.50%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGM---IVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D+IKNMITG +  D A++++ +T G          QTREH LLA  +GVKQ++   NK+D   P   +     +  E+   L + G++ D  P V  SG     +  R   +       L+EA+D  I  P+R TD P  + ++DV+ I G GTV  GRVE G LK G    IV +G S L T V  +EM  + L  A+ GDN G   ++   + LKRG + +    + P
Sbjct:  125 GHADYIKNMITGAATMDGAIIVVSATDGQMP-------QTREHLLLARQVGVKQIVVYINKVDMVEPDMIEL----VEMEMRELLSEYGFDGDNTPIV--SGSALCALEGREPEIGLNSITKLMEAVDSYITLPERKTDVPFLMAIEDVFSISGRGTVVTGRVERGTLKKGAEIEIVGYG-SHLKTTVTGIEMFKKQLDAAVAGDNCGLLLRSIKREQLKRGMIVAQPGTVAP 343          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_FRAAA (Elongation factor Tu OS=Frankia alni (strain ACN14a) GN=tuf PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.319e-27
Identity = 87/240 (36.25%), Postives = 120/240 (50.00%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPDKIPFVPISGF---EGDNMIERSTNLDWYKGPTLLEAL----DQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D+IKNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK D    +       E+V+ EV   L    +  D +P + +S     EGD         +W  G  LLE +    D I EP+R  D+P  +P++DV+ I G GTV  GRVE G++K      IV   P   TT V  VEM  + L E   GDNVG   +    +D++RG V    + I P
Sbjct:   86 GHADYIKNMITGAAQMDGAILVVSATDGPMP-------QTKEHVLLARQVGVPYIVVALNKADMVDDE----EILELVELEVRELLSSYEFPGDDVPVIRVSALKALEGDK--------EW--GAKLLELMAAVDDSIPEPQRDIDRPFLMPIEDVFTITGRGTVVTGRVERGIVKVNETVEIVGIKPETTTTTVTGVEMFRKLLDEGRAGDNVGLLLRGIKREDVERGQVIVKPKTITP 304          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: CYSN_CHRSD (Sulfate adenylyltransferase subunit 1 OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=cysN PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.319e-27
Identity = 77/205 (37.56%), Postives = 109/205 (53.17%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALD--QINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNV 611
            GH  + +NM TG S A  AV++ID+  G          QTR H+ +A  LG++ ++   NKMD     YS+AR+DEIV E   +  K+  N   I FVP+S  EGDN++ +S  + WY+GP LL  L+  ++   K  TD  LRLP+Q V +         G +E G+L+PG  V   PSG  + V  +      L EA PG  +
Sbjct:  113 GHEQYTRNMATGASTASLAVILIDARHG-------VQTQTRRHSFIADLLGIQHLVIAVNKMDLVD--YSQARFDEIVAEYREFAAKL--NAPDIHFVPLSALEGDNVVNKSEAMSWYEGPALLHLLETVEVTHDKNLTD--LRLPVQYVNRPHLDFRGYCGTLEAGILRPGQRVKVLPSGKASTVARIVTFDGDLEEAYPGQAI 304          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_THET2 (Elongation factor Tu OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.722e-27
Identity = 84/239 (35.15%), Postives = 121/239 (50.63%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNL-----DWY-KGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D+IKNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D           D +  EV   L +  +  D++P +  S       + R+        +W  K   LL+A+D+ I  P R  DKP  +P++DV+ I G GTV  GR+E G +K G    IV   P    T V  VEMH ++L E + GDNVG   +  S ++++RG V +    I P
Sbjct:   85 GHADYIKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFMNKVDMVD---DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITP 313          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_THEM4 (Elongation factor Tu OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=tuf PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.722e-27
Identity = 84/233 (36.05%), Postives = 116/233 (49.79%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  + V  MI   NK D       +   D +  EV   L K  +  D +P +  S  +         +  +     LL+ +D+   EP+R TDKP  +P++DV+ I G GTV  GR+E GV++PG    IV        T V SVEM  + L E L GDNVG   +     +++RG V +    I P
Sbjct:   84 GHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVNVPAMIVFINKTDMVD---DEELVDLVEMEVRELLNKYEFPGDDLPVIRGSALKAVEASNDPNDEAYAPIKELLDTMDEYFPEPQRETDKPFLMPVEDVFSITGRGTVVTGRIERGVIRPGDEVEIVGMSYEVNKTVVTSVEMFRKILDEGLAGDNVGCLLRGIDKDEVERGQVLAKPGSITP 306          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_STIAU (Elongation factor Tu OS=Stigmatella aurantiaca GN=tuf PE=3 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.722e-27
Identity = 89/236 (37.71%), Postives = 127/236 (53.81%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTL--LEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D       +    E+V+ EV   LKK  +  D IP +P S  +    +E  T+ D  +G  L  + A+D+ I  P+R TDKP  +P++DV+ I G GTV  GRVE G +K G    IV   P+  T  +  VEM  + L E + GDN+G   +    +DL+RG V +N   I P
Sbjct:   84 GHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFLNKVDMLDDPELR----ELVEMEVRDLLKKYEFPGDSIPIIPGSALKA---LEGDTS-DIGEGAILKLMAAVDEYIPTPQRATDKPFLMPVEDVFSIAGRGTVATGRVERGKIKVGEEVEIVGIRPTQKTV-ITGVEMFRKLLDEGMAGDNIGALLRGLKREDLERGQVLANWGSINP 303          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU2_THET8 (Elongation factor Tu-B OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=tufB PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.722e-27
Identity = 84/239 (35.15%), Postives = 121/239 (50.63%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNL-----DWY-KGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D+IKNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D           D +  EV   L +  +  D++P +  S       + R+        +W  K   LL+A+D+ I  P R  DKP  +P++DV+ I G GTV  GR+E G +K G    IV   P    T V  VEMH ++L E + GDNVG   +  S ++++RG V +    I P
Sbjct:   85 GHADYIKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFMNKVDMVD---DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITP 313          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU2_MYXXD (Elongation factor Tu 2 OS=Myxococcus xanthus (strain DK 1622) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.722e-27
Identity = 85/237 (35.86%), Postives = 126/237 (53.16%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPDKIPFVP---ISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D       +    E+V+ EV   LKK  +  D IP +P   +   EGD     ++++       L+EA+D  I  P+R TDKP  +P++DV+ I G GTV  GRVE G++K G    +V   P+  T  V  VEM  + L + + GDN+G   +    +D++RG V +    I P
Sbjct:   84 GHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFLNKVDMLDDPELR----ELVEMEVRDLLKKYEFPGDDIPIIPGSALKALEGD-----TSDIGEPAILKLMEAVDSYIPTPQRATDKPFLMPVEDVFSISGRGTVATGRVERGIIKVGEEVEVVGLRPTQKTV-VTGVEMFRKLLDQGMAGDNIGALVRGLKREDMERGQVLAKPGSITP 303          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU1_THETH (Elongation factor Tu-A OS=Thermus thermophilus GN=tufA PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.722e-27
Identity = 84/239 (35.15%), Postives = 121/239 (50.63%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNL-----DWY-KGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D+IKNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D           D +  EV   L +  +  D++P +  S       + R+        +W  K   LL+A+D+ I  P R  DKP  +P++DV+ I G GTV  GR+E G +K G    IV   P    T V  VEMH ++L E + GDNVG   +  S ++++RG V +    I P
Sbjct:   85 GHADYIKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFMNKVDMVD---DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRRTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITP 313          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU1_THET8 (Elongation factor Tu-A OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=tufA PE=1 SV=3)

HSP 1 Score: 122.865 bits (307), Expect = 1.722e-27
Identity = 84/239 (35.15%), Postives = 121/239 (50.63%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNL-----DWY-KGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D+IKNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D           D +  EV   L +  +  D++P +  S       + R+        +W  K   LL+A+D+ I  P R  DKP  +P++DV+ I G GTV  GR+E G +K G    IV   P    T V  VEMH ++L E + GDNVG   +  S ++++RG V +    I P
Sbjct:   85 GHADYIKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFMNKVDMVD---DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRRTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITP 313          
The following BLAST results are available for this feature:
BLAST of DC900092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_SCHPO1.010e-2736.05Elongation factor Tu, mitochondrial OS=Schizosacch... [more]
EFTU_FRAAA1.319e-2736.25Elongation factor Tu OS=Frankia alni (strain ACN14... [more]
CYSN_CHRSD1.319e-2737.56Sulfate adenylyltransferase subunit 1 OS=Chromohal... [more]
EFTU_THET21.722e-2735.15Elongation factor Tu OS=Thermus thermophilus (stra... [more]
EFTU_THEM41.722e-2736.05Elongation factor Tu OS=Thermosipho melanesiensis ... [more]
EFTU_STIAU1.722e-2737.71Elongation factor Tu OS=Stigmatella aurantiaca GN=... [more]
EFTU2_THET81.722e-2735.15Elongation factor Tu-B OS=Thermus thermophilus (st... [more]
EFTU2_MYXXD1.722e-2735.86Elongation factor Tu 2 OS=Myxococcus xanthus (stra... [more]
EFTU1_THETH1.722e-2735.15Elongation factor Tu-A OS=Thermus thermophilus GN=... [more]
EFTU1_THET81.722e-2735.15Elongation factor Tu-A OS=Thermus thermophilus (st... [more]

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Properties
Property NameValue
Genbank descriptionDC900092 VSS Citrus sinensis cDNA clone VS27V08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900092 ID=DC900092; Name=DC900092; organism=Citrus sinensis; type=EST; length=707bp
CTGGACATCGTGACTTTATTAAGAACATGATTACTGGTACTTCTCAGGCT
GATTGTGCTGTCCTTATCATCGACTCCACCACTGGTGGTTTTGAAGCTGG
TATCTCTAAGGATGGGCAGACCAGAGAGCACGCTCTACTTGCTTTCACCC
TTGGTGTGAAGCAAATGATTTGTTGCTGTAACAAGATGGATGCCACCACT
CCCAAGTATTCAAAGGCAAGATATGATGAAATTGTTAAGGAAGTCTCTTC
CTACTTGAAGAAGGTTGGCTACAACCCAGATAAGATTCCATTTGTCCCAA
TCTCTGGATTTGAGGGTGATAACATGATTGAGAGGTCCACAAACCTTGAC
TGGTACAAGGGCCCAACCCTTCTTGAAGCTCTTGACCAGATCAATGAACC
CAAGAGACCAACAGACAAGCCTCTCCGTCTCCCCCTTCAGGATGTCTACA
AGATTGGTGGTATTGGAACTGTCCCTGTTGGCCGTGTTGAAACTGGTGTA
CTCAAGCCCGGTATGATAGTCACATTCGGTCCATCTGGATTGACTACTGA
AGTTAAGTCAGTTGAGATGCACCATGAGTCTCTCCTGGAGGCACTTCCTG
GTGATAATGTGGGGTTCAACGNTAAGAATGNTTCAGTGAAGGATCTTAAG
CGTGGGTACGTTGCATCTAACTCCAGGATGATCCCGCCAGGGGGCATCCA
CTTCACC
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