DC900092

Overview
NameDC900092
Unique NameDC900092
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_BORGA (Elongation factor Tu OS=Borrelia garinii GN=tuf PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.547e-27
Identity = 83/232 (35.78%), Postives = 122/232 (52.59%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINE-PKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLT--TEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D+IKNMITG +Q D A+L++ + +G        + QT+EH LLA  +G+K++I   NK+D   P+  +     +  EV   ++K G++ +  P +  S F   +  E   +    K   LLE++D   + P+R  DKP  L ++DV+ I G GTV  GR+E GV+K G  V       T  T V  VEM  + L +   GDNVG   +    KD++RG V S    I P
Sbjct:   85 GHADYIKNMITGAAQMDAAILLVAADSGA-------EPQTKEHLLLAQRMGIKKIIVFLNKLDLADPELVEL----VEVEVLELVEKYGFSANT-PIIKGSAFGAMSNPEDPESTKCVK--ELLESMDNYFDLPERDIDKPFLLAVEDVFSISGRGTVATGRIERGVIKVGQEVEIVGIKETRKTTVTGVEMFQKILEQGQAGDNVGLLLRGVDKKDIERGQVLSAPGTITP 302          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_RICM5 (Elongation factor Tu OS=Rickettsia massiliae (strain Mtu5) GN=tuf PE=3 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.116e-26
Identity = 84/236 (35.59%), Postives = 120/236 (50.85%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVP---ISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  M+   NK+D           + +  EV   L K G+  D+IP +    +   EG    E + N        L++A+D  I +P R TDKP  +P++DV+ I G GTV  GRVE+G++K G    IV    +  TT    VEM  + L E   GDNVG   +    ++++RG V +    I P
Sbjct:   84 GHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPAMVVFLNKVDMVD---DPDLLELVEMEVRELLSKYGFPGDEIPIIKGSALQALEGKPEGEEAIN-------ELMDAVDSYIPQPVRATDKPFLMPIEDVFSISGRGTVVTGRVESGIIKVGDEIEIVGLKDTQKTT-CTGVEMFRKLLDEGQAGDNVGILLRGTKREEVERGQVLAKPGSIKP 301          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_RICCK (Elongation factor Tu OS=Rickettsia canadensis (strain McKiel) GN=tuf PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.116e-26
Identity = 83/236 (35.17%), Postives = 121/236 (51.27%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVP---ISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  M+   NK+D           + +  EV   L K G+  D+IP +    +   EG    E++ N        L++A+D  I +P R TDKP  +P++DV+ I G GTV  GRVE+G++K G    IV    +  TT    VEM  + L E   GDN+G   +    ++++RG V +    I P
Sbjct:   84 GHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPAMVVFLNKVDMVD---DPDLLELVEMEVRELLSKYGFPGDEIPIIKGSALQALEGKPEGEKAIN-------ELMDAVDSYIPQPVRATDKPFLMPIEDVFSISGRGTVVTGRVESGIIKVGEEIEIVGLKDTQKTT-CTGVEMFRKLLDEGQAGDNIGVLLRGTKREEVERGQVLAKPGSIKP 301          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_EHRCR (Elongation factor Tu OS=Ehrlichia chaffeensis (strain Arkansas) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.116e-26
Identity = 85/237 (35.86%), Postives = 122/237 (51.48%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWY--KGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG-MIVTFGPSGL-TTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPPGGIH 701
            GH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GVK ++   NK D    +   +  +  ++E+   L K GY  D I  V  S  +    +E  T    +  K   L+ AL++I+ P R  DKP  + ++DV+ I G GTV  GR+E GV++ G  I   G   + +T    VEM H++L     GDN G   +    +D++RG V S      PG IH
Sbjct:   83 GHADYIKNMITGAAQMDAAILVVSATDGAMP-------QTREHILLAKQVGVKDIVVWMNKCDVVDDEEMLSLVEMEIREL---LSKYGYPGDDIDVVRGSAVKA---LEEETGSGVWSEKIMELMNALEKISLPTREKDKPFLMSIEDVFSIPGRGTVVTGRIERGVIRVGDKIEIVGLRDIQSTVCTGVEMFHKALDAGEAGDNAGILLRGIKKEDVERGQVLS-----APGQIH 301          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_CLOK5 (Elongation factor Tu OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.116e-26
Identity = 84/235 (35.74%), Postives = 124/235 (52.77%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGP-TLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV+ ++   NK D    +       E+V+ EV   L + G+  D +P +  S  +   +IE   + +  K    L+EA+D  I  P+RP DKP  +P++DV+ I G GTV  GRVE+GVLK G    IV        T    VEM  + L +A+ GDN+G   +    ++++RG V S    + P
Sbjct:   84 GHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLASRVGVQYIVVFLNKSD----QVDDPELIELVEMEVRELLSEYGFPGDDVPIIVGSALK---VIENPEDAEATKCIYELMEAVDTYIPTPERPVDKPFLMPIEDVFTITGRGTVATGRVESGVLKIGDEVEIVGLKEEKKKTVCTGVEMFRKLLDQAMAGDNIGALLRGIQREEIERGQVLSKPGSVKP 304          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_ARTS2 (Elongation factor Tu OS=Arthrobacter sp. (strain FB24) GN=tuf PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.116e-26
Identity = 86/237 (36.29%), Postives = 117/237 (49.37%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGF---EGDNMIERSTNLDWYKG-PTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGM---IVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   D +  EV   L   G++ D+ P V +SG    EGD         +W K    L+ A+D+ + +P R  DKP  +P++DV+ I G GTV  GR E G L       IV   P   TT V  +EM H+ L EA  G+N G   +     D++RG V      I P
Sbjct:   86 GHADYIKNMITGAAQMDGAILVVAATDGPM-------AQTREHVLLARQVGVPYLLVALNKADMVD---DEELLDLVEMEVRELLSSQGFDGDEAPVVRVSGLKALEGDP--------EWVKSVEDLMAAVDESVPDPVRDRDKPFLMPIEDVFTITGRGTVVTGRAERGTLAINSEVEIVGIRPVQKTT-VTGIEMFHKQLDEAWAGENCGLLLRGLKRDDVERGQVVVKPGSITP 303          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_THEFY (Elongation factor Tu OS=Thermobifida fusca (strain YX) GN=tuf PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.458e-26
Identity = 84/238 (35.29%), Postives = 123/238 (51.68%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGF---EGDNMIERSTNLDWYKGPT-LLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPPG 692
            GH D++KNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK D       +  +D +  EV   L +  +  D++P + +S     EGD         +W K    L+EA+DQ I EP+R  DKP  +P++DV+ I G GTV  GR+E GV+       IV      +TT V  VEM  + L +   GDNVG   +    ++++RG V     +I PG
Sbjct:   86 GHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTKEHVLLARQVGVPYIVVALNKSDMVD---DEEIFDLVELEVRELLNEYEFPGDEVPVIRVSALKALEGDP--------EWGKKILELMEAVDQNIPEPQRDIDKPFLMPIEDVFSITGRGTVVTGRIERGVINVNDTVEIVGLKDDKITTTVTGVEMFRKLLDQGQAGDNVGLLLRGVKREEVERGQV-----VIKPG 300          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_FRASN (Elongation factor Tu OS=Frankia sp. (strain EAN1pec) GN=tuf PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.458e-26
Identity = 84/240 (35.00%), Postives = 120/240 (50.00%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPDKIPFVPISGF---EGDNMIERSTNLDWYKGPTLLEALDQIN----EPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D+IKNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK D    +       E+V+ EV   L    +  D +P + +S     EGD         +W  G  LLE +  ++    EP+R  D+P  +P++DV+ I G GTV  GR+E G++K      IV   P   TT V  VEM  + L E   GDNVG   +    +D++RG V    + I P
Sbjct:   86 GHADYIKNMITGAAQMDGAILVVSATDGPMP-------QTKEHVLLARQVGVPYIVVALNKADMVDDE----EILELVELEVRELLNTYEFPGDDVPVIRVSALKALEGDK--------EW--GEKLLELMAAVDASIPEPERDIDRPFLMPIEDVFTITGRGTVVTGRIERGIVKVNETVEIVGIKPETTTTTVTGVEMFRKLLDEGQAGDNVGLLLRGIKREDVERGQVIVKPKSITP 304          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_FLAPJ (Elongation factor Tu OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=tuf PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.458e-26
Identity = 81/237 (34.18%), Postives = 122/237 (51.48%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWY-KGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPPGGI 698
            GH D++KNM+TG +Q D A+L++ +T G          QTREH LL   +G+ +M+   NK+D    +      +  ++++ S+ +   Y+ D  P V  S   G N      +  W  K   L+EA D  I EP R T+KP  +P++DV+ I G GTV  GR+ETG+   G    I+  G   LT+ V  +EM  + L     GDN G   +  + +D+KRG V     +I PG +
Sbjct:   84 GHADYVKNMVTGAAQMDGAILVVAATDGPMP-------QTREHILLGRQVGIPRMVVFMNKVDMVDDEELLELVEMEIRDLLSFYE---YDGDNGPVVQGSALGGLN-----NDPAWVPKIIELMEACDSWIQEPIRDTEKPFLMPVEDVFTITGRGTVATGRIETGICNTGDPVEIIGMGAEKLTSTVTGIEMFRQILDRGEAGDNAGILLRGVAKEDIKRGMV-----IIKPGSV 300          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_ARTCA (Elongation factor Tu OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=tuf PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.458e-26
Identity = 85/236 (36.02%), Postives = 117/236 (49.58%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGF---EGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGM---IVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   D +  EV   L   G++ D+ P V +SG    EGD +  +S          L+ A+D+ + +P R  DKP  +P++DV+ I G GTV  GR E G L       IV   P   TT V  +EM H+ L EA  G+N G   +     D++RG V      I P
Sbjct:   86 GHADYIKNMITGAAQMDGAILVVAATDGPM-------AQTREHVLLARQVGVPYLLVALNKSDMVD---DEELLDLVEMEVRELLSSQGFDGDEAPVVRVSGLKALEGDPVWVKSVE-------DLMAAVDESVPDPVRDRDKPFLMPIEDVFTITGRGTVVTGRAERGTLAINSEVEIVGIRPVQKTT-VTGIEMFHKQLDEAWAGENCGLLLRGLKRDDVERGQVVVKPGSITP 303          
The following BLAST results are available for this feature:
BLAST of DC900092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_BORGA8.547e-2735.78Elongation factor Tu OS=Borrelia garinii GN=tuf PE... [more]
EFTU_RICM51.116e-2635.59Elongation factor Tu OS=Rickettsia massiliae (stra... [more]
EFTU_RICCK1.116e-2635.17Elongation factor Tu OS=Rickettsia canadensis (str... [more]
EFTU_EHRCR1.116e-2635.86Elongation factor Tu OS=Ehrlichia chaffeensis (str... [more]
EFTU_CLOK51.116e-2635.74Elongation factor Tu OS=Clostridium kluyveri (stra... [more]
EFTU_ARTS21.116e-2636.29Elongation factor Tu OS=Arthrobacter sp. (strain F... [more]
EFTU_THEFY1.458e-2635.29Elongation factor Tu OS=Thermobifida fusca (strain... [more]
EFTU_FRASN1.458e-2635.00Elongation factor Tu OS=Frankia sp. (strain EAN1pe... [more]
EFTU_FLAPJ1.458e-2634.18Elongation factor Tu OS=Flavobacterium psychrophil... [more]
EFTU_ARTCA1.458e-2636.02Elongation factor Tu OS=Arthrobacter chlorophenoli... [more]

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Properties
Property NameValue
Genbank descriptionDC900092 VSS Citrus sinensis cDNA clone VS27V08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900092 ID=DC900092; Name=DC900092; organism=Citrus sinensis; type=EST; length=707bp
CTGGACATCGTGACTTTATTAAGAACATGATTACTGGTACTTCTCAGGCT
GATTGTGCTGTCCTTATCATCGACTCCACCACTGGTGGTTTTGAAGCTGG
TATCTCTAAGGATGGGCAGACCAGAGAGCACGCTCTACTTGCTTTCACCC
TTGGTGTGAAGCAAATGATTTGTTGCTGTAACAAGATGGATGCCACCACT
CCCAAGTATTCAAAGGCAAGATATGATGAAATTGTTAAGGAAGTCTCTTC
CTACTTGAAGAAGGTTGGCTACAACCCAGATAAGATTCCATTTGTCCCAA
TCTCTGGATTTGAGGGTGATAACATGATTGAGAGGTCCACAAACCTTGAC
TGGTACAAGGGCCCAACCCTTCTTGAAGCTCTTGACCAGATCAATGAACC
CAAGAGACCAACAGACAAGCCTCTCCGTCTCCCCCTTCAGGATGTCTACA
AGATTGGTGGTATTGGAACTGTCCCTGTTGGCCGTGTTGAAACTGGTGTA
CTCAAGCCCGGTATGATAGTCACATTCGGTCCATCTGGATTGACTACTGA
AGTTAAGTCAGTTGAGATGCACCATGAGTCTCTCCTGGAGGCACTTCCTG
GTGATAATGTGGGGTTCAACGNTAAGAATGNTTCAGTGAAGGATCTTAAG
CGTGGGTACGTTGCATCTAACTCCAGGATGATCCCGCCAGGGGGCATCCA
CTTCACC
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