DC900092

Overview
NameDC900092
Unique NameDC900092
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_BOVIN (Elongation factor Tu, mitochondrial OS=Bos taurus GN=TUFM PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.105e-25
Identity = 81/233 (34.76%), Postives = 117/233 (50.21%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTF--GPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D++KNMITGT+  D  +L++ +  G          QTREH LLA  +GV+ ++   NK DA       +   E+V+ E+   L + GY  ++ P +  S      + +R   L       LL+A+D  I  P R  +KP  LP++ VY I G GTV  G +E G+LK G    F      + T V  +EM H+SL  A  GDN+G   +    +DL+RG V +    I P
Sbjct:  129 GHADYVKNMITGTAPLDGCILVVAANDGPMP-------QTREHLLLARQIGVEHVVVYVNKADAV----QDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCA--LEQRDPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPGSIQP 348          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: CYSN_BACTN (Sulfate adenylyltransferase subunit 1 OS=Bacteroides thetaiotaomicron GN=cysN PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.105e-25
Identity = 72/228 (31.58%), Postives = 121/228 (53.07%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIP 686
            GH  + +NMITG S A+ A++++D+ TG          QTR H  L   LG+K ++   NKMD     +S+ R+DEIV E   +++ +G  PD +  +P+S  +GDN++++S    WYKG +LL+ L+ ++          R P+Q V +         G+V +G+++ G  V   PSG T++VKS+  +   L  A P  +V    ++    D+ RG +  +   +P
Sbjct:  108 GHEQYTRNMITGGSTANLAIILVDARTGVIT-------QTRRHTFLVSLLGIKHVVLAVNKMDLVD--FSEERFDEIVSEYKKFVEPLGI-PD-VNCIPLSALDGDNVVDKSERTPWYKGISLLDFLETVHIDNDHNFTDFRFPVQYVLRPNLDFRGFCGKVASGIVRKGDTVMALPSGKTSKVKSIVTYDGELDYAFPPQSVTLTLEDEI--DVSRGEMLVHPDNLP 322          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_SYMTH (Elongation factor Tu OS=Symbiobacterium thermophilum GN=tuf PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.750e-25
Identity = 81/236 (34.32%), Postives = 116/236 (49.15%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFV---PISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L +  +  D+IPF+    +   EGD    ++          L++A+D  I  P+R  DKP  +P++DV+ I G GTV  GRVE G  K G    IV       TT V  +EM  + L E   GDNVG   +    K+++RG V +    I P
Sbjct:   84 GHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPAIVVFLNKCDMVD---DEELLELVELEVRELLNQYEFPGDEIPFIRGSALKALEGDPKYVKAIE-------ELMDAVDSYIPTPQRDADKPFLMPIEDVFTITGRGTVVTGRVERGKCKVGDQVEIVGLREESKTTVVTGLEMFRKILDEVQAGDNVGALLRGIEKKEVERGQVLAKPGSIKP 302          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_STRU0 (Elongation factor Tu OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=tuf PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.750e-25
Identity = 80/236 (33.90%), Postives = 117/236 (49.58%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVP---ISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D       +   + +  E+   L +  +  D +P +    +   EGD+  E            L++  D+ I EP+R TDKPL LP++DV+ I G GTV  GR++ G ++      IV          V  VEM  + L E L GDNVG   +     +++RG V +    I P
Sbjct:   87 GHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKIDLVD---DEELLELVEMEIRDLLSEYDFPGDDLPVIQGSALKALEGDSKYEDIIM-------ELMKTADEYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGTVRVNDEIEIVGIKEETKKAVVTGVEMFRKQLDEGLAGDNVGILLRGVQRDEIERGQVIAKPGSINP 305          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_RHDSA (Elongation factor Tu, chloroplastic OS=Rhodomonas salina GN=tufA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.750e-25
Identity = 86/243 (35.39%), Postives = 120/243 (49.38%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGF------EGDNMIERSTNLDWYKGPTLLEALDQINE----PKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGL----TTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D++KNMITG +Q D A+L+  +  G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L K  +  D+IPFV  S         G   I R  +  W    T+ E +D+I+E    P+R TDK   + ++DV+ I G GTV  GR+E G +K G  +     GL    TT +  +EM  +SL EAL GDNVG   +     D++RG V +    I P
Sbjct:   84 GHADYVKNMITGAAQMDGAILVCSAADGPMP-------QTREHILLAKQVGVPHIVVFLNKADMVD---DEELLELVELEVQELLSKYDFPGDEIPFVAGSALLALETAVGKPDIGRGED-KWVD--TIFELMDKIDEYIPTPERETDKSFLMAVEDVFSITGRGTVATGRIERGQVKVGDTIEI--IGLRETRTTTITGLEMFQKSLEEALAGDNVGILVRGIQKTDIERGMVLAAPGSITP 311          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_PROM3 (Elongation factor Tu OS=Prochlorococcus marinus (strain MIT 9303) GN=tuf PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.750e-25
Identity = 84/238 (35.29%), Postives = 121/238 (50.84%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPDKIPFVPISGFEG-DNMIERSTNLDWYKGPTLLEALD-QINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPPGGI 698
            GH D++KNMITG +Q D A+L+  +T G          QT+EH LLA  +GV  ++   NK D    +       E+V+ E+   L    +  D IP V +SG +  +   E    +D      L++A+D  I EP+R  +KP  + ++DV+ I G GTV  GR+E G +K G    IV    S  TT V  VEM  + L E L GDN G   +    +D++RG V     ++ PG I
Sbjct:   84 GHADYVKNMITGAAQMDGAILVCAATDGPM-------AQTKEHILLAKQVGVPALVVALNKCDMVDDE----EIIELVEMEIRELLSSYDFPGDDIPIVQVSGLKAIEGEAEWEAKID-----ELMDAVDTSIPEPEREIEKPFLMAVEDVFSITGRGTVATGRIERGKVKKGEEIEIVGIRDSRKTT-VTGVEMFRKDLDEGLAGDNCGLLLRGIEKEDIERGMV-----LVKPGSI 299          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_MOUSE (Elongation factor Tu, mitochondrial OS=Mus musculus GN=Tufm PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.750e-25
Identity = 83/236 (35.17%), Postives = 119/236 (50.42%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG--MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPPGGI 698
            GH D++KNMITGT+  D  +L++ +  G          QTREH LLA  +GV+ ++   NK DA       +   E+V+ E+   L + GY  ++ P +  S      + +R   L       LL+A+D  I  P R  DKP  LP++ VY I G GTV  G +E G+LK G    +      + T V  +EM H+SL  A  GDN+G   +    +DL+RG V     M+ PG I
Sbjct:  129 GHADYVKNMITGTAPLDGCILVVAANDGPMP-------QTREHLLLAKQIGVEHVVVYVNKADAV----QDSEMVELVELEIRELLTEFGYKGEETPVIVGSALCA--LEQRDPELGVKSVQKLLDAVDTYIPVPTRDLDKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECELLGHNKNIRTVVTGIEMFHKSLERAEAGDNLGALVRGLKREDLRRGLV-----MVKPGSI 346          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_GRATL (Elongation factor Tu, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=tufA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.750e-25
Identity = 81/241 (33.61%), Postives = 123/241 (51.04%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEG------DNMIERSTNLDWY-KGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGL----TTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L +  +  D IPFV  S          +N I+R  N +W  K  +L++A+D+ I  P R  +K   + ++DV+ I G GTV  GR+E G++K G  +     GL    TT +  +EM  ++L E + GDN+G   +    KD++RG V +    I P
Sbjct:   84 GHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPNVVVFLNKQDQVD---DEELLELVELEVRELLIQYDFPGDDIPFVAGSALLALEKVTENNSIQRGEN-EWVDKIHSLMDAVDEYIPTPVRDVEKTFLMAVEDVFSITGRGTVATGRIERGIIKVGDTIEI--VGLRETTTTTITGLEMFQKTLDEGMAGDNIGILLRGVQKKDIERGMVLAQPGTITP 311          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_DESDA (Elongation factor Tu OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=tuf PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.750e-25
Identity = 86/238 (36.13%), Postives = 117/238 (49.16%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFV---PISGFEGD--NMIERSTNLDWYKGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D+IKNMITG +Q D  +L++ +T G          QTREH LLA  +GV Q++   NK D       +   + +  EV   L    +  D +P +    +   E D  N  E    LD      LL+A D  I EP R  DKP  +P++DV+ I G GTV  GRVE GV+K G    IV   P+  TT    VEM  + L +   GDN+G   +     D++RG V +  + I P
Sbjct:   84 GHADYIKNMITGAAQMDGGILVVAATDGPMP-------QTREHILLARQVGVPQLVVFLNKCDLVD---DEELLELVELEVRELLSSYDFPGDDVPVIRGSALKALESDDPNSAEAKCILD------LLDACDSFIPEPVRDIDKPFLMPIEDVFSISGRGTVVTGRVERGVIKVGEEVEIVGIKPTVKTT-CTGVEMFRKLLDQGEAGDNIGALLRGTKRDDVERGQVLAAPKSITP 304          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_CLOAB (Elongation factor Tu OS=Clostridium acetobutylicum GN=tuf PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.750e-25
Identity = 81/232 (34.91%), Postives = 112/232 (48.28%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV+ ++   NK D           D +  EV   L + G+  D  P V  S  +     + +  +   K   + E    I  P+RPTDK   +P++DV+ I G GTV  GRVETG LK G    IV          V  VEM  + L  AL GDN+G   +    +D++RG V +    I P
Sbjct:   84 GHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLASRVGVEYIVVFLNKADQVD---DPELIDLVEMEVRELLNEYGFPGDDTPIVVGSALKALQNPDDAEAIKPIKD-LMAEVDAYIPTPERPTDKAFLMPIEDVFTITGRGTVATGRVETGTLKVGDEVEIVGMKDEITKVVVTGVEMFRKILDSALAGDNIGALLRGVQREDIERGQVLAKPGSITP 304          
The following BLAST results are available for this feature:
BLAST of DC900092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_BOVIN2.105e-2534.76Elongation factor Tu, mitochondrial OS=Bos taurus ... [more]
CYSN_BACTN2.105e-2531.58Sulfate adenylyltransferase subunit 1 OS=Bacteroid... [more]
EFTU_SYMTH2.750e-2534.32Elongation factor Tu OS=Symbiobacterium thermophil... [more]
EFTU_STRU02.750e-2533.90Elongation factor Tu OS=Streptococcus uberis (stra... [more]
EFTU_RHDSA2.750e-2535.39Elongation factor Tu, chloroplastic OS=Rhodomonas ... [more]
EFTU_PROM32.750e-2535.29Elongation factor Tu OS=Prochlorococcus marinus (s... [more]
EFTU_MOUSE2.750e-2535.17Elongation factor Tu, mitochondrial OS=Mus musculu... [more]
EFTU_GRATL2.750e-2533.61Elongation factor Tu, chloroplastic OS=Gracilaria ... [more]
EFTU_DESDA2.750e-2536.13Elongation factor Tu OS=Desulfovibrio desulfurican... [more]
EFTU_CLOAB2.750e-2534.91Elongation factor Tu OS=Clostridium acetobutylicum... [more]

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Properties
Property NameValue
Genbank descriptionDC900092 VSS Citrus sinensis cDNA clone VS27V08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900092 ID=DC900092; Name=DC900092; organism=Citrus sinensis; type=EST; length=707bp
CTGGACATCGTGACTTTATTAAGAACATGATTACTGGTACTTCTCAGGCT
GATTGTGCTGTCCTTATCATCGACTCCACCACTGGTGGTTTTGAAGCTGG
TATCTCTAAGGATGGGCAGACCAGAGAGCACGCTCTACTTGCTTTCACCC
TTGGTGTGAAGCAAATGATTTGTTGCTGTAACAAGATGGATGCCACCACT
CCCAAGTATTCAAAGGCAAGATATGATGAAATTGTTAAGGAAGTCTCTTC
CTACTTGAAGAAGGTTGGCTACAACCCAGATAAGATTCCATTTGTCCCAA
TCTCTGGATTTGAGGGTGATAACATGATTGAGAGGTCCACAAACCTTGAC
TGGTACAAGGGCCCAACCCTTCTTGAAGCTCTTGACCAGATCAATGAACC
CAAGAGACCAACAGACAAGCCTCTCCGTCTCCCCCTTCAGGATGTCTACA
AGATTGGTGGTATTGGAACTGTCCCTGTTGGCCGTGTTGAAACTGGTGTA
CTCAAGCCCGGTATGATAGTCACATTCGGTCCATCTGGATTGACTACTGA
AGTTAAGTCAGTTGAGATGCACCATGAGTCTCTCCTGGAGGCACTTCCTG
GTGATAATGTGGGGTTCAACGNTAAGAATGNTTCAGTGAAGGATCTTAAG
CGTGGGTACGTTGCATCTAACTCCAGGATGATCCCGCCAGGGGGCATCCA
CTTCACC
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