DC900092

Overview
NameDC900092
Unique NameDC900092
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2880 contig Csv1_Contig2880:368..1074. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_NAUPA (Elongation factor Tu OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=tuf PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.591e-25
Identity = 79/234 (33.76%), Postives = 121/234 (51.71%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWY-KGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D++KNMITG +Q D A+L++ +T G          QTREH LL+  +GV  ++   NKMD       +   + +  EV   L +  ++ D  P V  S  +    ++     +W  K   L+ A+D+ I  P+R T+K   +P++DV+ I G GTV  GR+E G L       IV F P+ +TT+V  +EM  + + EA  GDNVG   +     +++RG V +    I P
Sbjct:   84 GHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLSRQVGVPAIVVFLNKMDMVD---DEELLELVEMEVRELLSEYEFDGDNAPVVAGSALKALEEVKAGQLGEWSEKILELMAAVDEYIPTPERDTEKDFLMPIEDVFSISGRGTVVTGRIERGTLHLNDDVDIVGFKPT-VTTKVTGIEMFRKEMDEAQAGDNVGVLLRGIKKDEVERGQVLAKPGSITP 306          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_MYCPA (Elongation factor Tu OS=Mycobacterium paratuberculosis GN=tuf PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.591e-25
Identity = 85/236 (36.02%), Postives = 116/236 (49.15%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGF---EGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L    ++ D  P V +S     EGD     S          L+EA+D+ I +P R TDKP  +P++DV+ I G GTV  GRVE GV+       IV   PS   T V  VEM  + L +   GDNVG   +    +D++RG V +      P
Sbjct:   86 GHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKADMVD---DEELLELVEMEVRELLAAQEFDEDA-PVVRVSALKALEGDAKWVESVE-------QLMEAVDESIPDPVRETDKPFLMPVEDVFTITGRGTVVTGRVERGVINVNEEVEIVGIRPSSTKTTVTGVEMFRKLLDQGQAGDNVGLLLRGIKREDVERGQVVTKPGTTTP 303          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_MYCA1 (Elongation factor Tu OS=Mycobacterium avium (strain 104) GN=tuf PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.591e-25
Identity = 85/236 (36.02%), Postives = 116/236 (49.15%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGF---EGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L    ++ D  P V +S     EGD     S          L+EA+D+ I +P R TDKP  +P++DV+ I G GTV  GRVE GV+       IV   PS   T V  VEM  + L +   GDNVG   +    +D++RG V +      P
Sbjct:   86 GHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKADMVD---DEELLELVEMEVRELLAAQEFDEDA-PVVRVSALKALEGDAKWVESVE-------QLMEAVDESIPDPVRETDKPFLMPVEDVFTITGRGTVVTGRVERGVINVNEEVEIVGIRPSSTKTTVTGVEMFRKLLDQGQAGDNVGLLLRGIKREDVERGQVVTKPGTTTP 303          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_MOOTA (Elongation factor Tu OS=Moorella thermoacetica (strain ATCC 39073) GN=tuf PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.591e-25
Identity = 81/234 (34.62%), Postives = 117/234 (50.00%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWY-KGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D           + +  EV   L +  +  D+IP V  S  +           +W  K   L++A+D  I  P+R TDKP  +P++DV+ I G GTV  GRVE G +K G    I+        T V  VEM  + L EA+ GDN+G   +    K+++RG V +    I P
Sbjct:   84 GHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFLNKVDQVD---DPELLELVEMEVRELLTEYEFPGDEIPIVTGSALKAMECGCGKRECEWCGKVWELMDAVDSYIPTPERDTDKPFLMPIEDVFTITGRGTVTTGRVERGKVKVGDEVEIIGLRDEIRKTVVTGVEMFRKILDEAVAGDNIGTLLRGVDRKEVERGMVLAKPGSIKP 307          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_LACS1 (Elongation factor Tu OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=tuf PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.591e-25
Identity = 81/242 (33.47%), Postives = 118/242 (48.76%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFV---PISGFEGDNMIERSTNLDWYKGPTLLEALDQINE----PKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPPGGI 698
            GH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV+ ++   NK D           D +  EV   L +  +  D IP +    +   EGD   E            ++E +D ++E    P+RPTDKP  +P++DV+ I G GTV  GR++ G +K G    IV      + T V  VEM  ++L E   GDN+G   +      ++RG V     +  PG I
Sbjct:   84 GHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVEYIVVFLNKCDLVD---DDELLDLVEMEVRDLLSEYDFPGDDIPVIRGSALKALEGDKDAEAQ----------IMELMDTVDEYIPTPQRPTDKPFLMPVEDVFTITGRGTVASGRIDRGTVKVGDEVEIVGLKDDVVKTTVTGVEMFRKTLDEGEAGDNIGALLRGVDRTQVERGQV-----LAKPGSI 300          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_ENTFA (Elongation factor Tu OS=Enterococcus faecalis GN=tuf PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.591e-25
Identity = 80/236 (33.90%), Postives = 117/236 (49.58%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVP---ISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D++KNMITG +Q D A+L++ +  G          QTREH LL+  +GV  ++   NKMD       +   + +  EV   L +  +  D +P +    +   EGD   E        K   L+ A+D+ I  P+R TDKP  +P++DV+ I G GTV  GRVE G ++ G    IV        T V  VEM  + L  A  GDN+G   +  + +D++RG V +    I P
Sbjct:   84 GHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLSRNVGVPYIVVFLNKMDMVD---DEELLELVEMEVRDLLSEYDFPGDDVPVIAGSALKALEGDESYEE-------KILELMAAVDEYIPTPERDTDKPFMMPVEDVFSITGRGTVATGRVERGEVRVGDEVEIVGIKDETSKTTVTGVEMFRKLLDYAEAGDNIGALLRGVAREDIERGQVLAKPATITP 302          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_EIMTE (Elongation factor Tu, apicoplast OS=Eimeria tenella GN=tufA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.591e-25
Identity = 82/225 (36.44%), Postives = 113/225 (50.22%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERST-NLDWYKG-PTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGL--TTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYV 662
            GH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  +I   NK+D           + +  EV   L    YN D    +  S  +    IE++  N  W K    L+EALD+ I EPKR  +KP  L ++D++ I G GTV  G++E G +K    V      L  TT V  +EM  + L  A  GDNVG   +     +++RG V
Sbjct:   84 GHADYIKNMITGAAQMDGAILVVSATDGPMP-------QTREHLLLAKQVGVPNIIVFLNKIDMVE---DNELLELVELEVRELLDIYEYNGDSTSIIKGSALKALEYIEKNDLNNKWVKNLKNLIEALDKSIPEPKRDINKPFLLSIEDIFSITGRGTVVTGKIERGKVKLNDTVDILGFNLLKTTTVTGIEMFQKILNTAEAGDNVGILLRGIQKNEVRRGMV 298          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_BACHK (Elongation factor Tu OS=Bacillus thuringiensis subsp. konkukian GN=tuf PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.591e-25
Identity = 77/229 (33.62%), Postives = 116/229 (50.66%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWY-KGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNS 674
            GH D++KNMITG +Q D  +L++ +  G          QTREH LL+  +GV  ++   NK D       +   + +  EV   L + G+  D IP +     +G  +       DW  K   L+  +D  I  P+R TDKP  +P++DV+ I G GTV  GRVE G++K G    I+       +T V  VEM  + L +A  GDN+G   +  + +D++RG V + S
Sbjct:   84 GHADYVKNMITGAAQMDGGILVVSAADGPMP-------QTREHILLSRQVGVPYIVVFLNKCDMVD---DEELLELVEMEVRDLLSEYGFPGDDIPVI-----KGSALKALQGEADWEAKIIELMAEVDAYIPTPERETDKPFLMPVEDVFSITGRGTVATGRVERGIVKVGDVVEIIGLAEENASTTVTGVEMFRKLLDQAQAGDNIGALLRGVAREDIQRGQVLAKS 297          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_BACCZ (Elongation factor Tu OS=Bacillus cereus (strain ZK / E33L) GN=tuf PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.591e-25
Identity = 77/229 (33.62%), Postives = 116/229 (50.66%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWY-KGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNS 674
            GH D++KNMITG +Q D  +L++ +  G          QTREH LL+  +GV  ++   NK D       +   + +  EV   L + G+  D IP +     +G  +       DW  K   L+  +D  I  P+R TDKP  +P++DV+ I G GTV  GRVE G++K G    I+       +T V  VEM  + L +A  GDN+G   +  + +D++RG V + S
Sbjct:   84 GHADYVKNMITGAAQMDGGILVVSAADGPMP-------QTREHILLSRQVGVPYIVVFLNKCDMVD---DEELLELVEMEVRDLLSEYGFPGDDIPVI-----KGSALKALQGEADWEAKIIELMAEVDAYIPTPERETDKPFLMPVEDVFSITGRGTVATGRVERGIVKVGDVVEIIGLAEENASTTVTGVEMFRKLLDQAQAGDNIGALLRGVAREDIQRGQVLAKS 297          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_BACCR (Elongation factor Tu OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=tuf PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.591e-25
Identity = 77/229 (33.62%), Postives = 116/229 (50.66%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWY-KGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNS 674
            GH D++KNMITG +Q D  +L++ +  G          QTREH LL+  +GV  ++   NK D       +   + +  EV   L + G+  D IP +     +G  +       DW  K   L+  +D  I  P+R TDKP  +P++DV+ I G GTV  GRVE G++K G    I+       +T V  VEM  + L +A  GDN+G   +  + +D++RG V + S
Sbjct:   84 GHADYVKNMITGAAQMDGGILVVSAADGPMP-------QTREHILLSRQVGVPYIVVFLNKCDMVD---DEELLELVEMEVRDLLSEYGFPGDDIPVI-----KGSALKALQGEADWEAKIIELMAEVDAYIPTPERETDKPFLMPVEDVFSITGRGTVATGRVERGIVKVGDVVEIIGLAEENASTTVTGVEMFRKLLDQAQAGDNIGALLRGVAREDIQRGQVLAKS 297          
The following BLAST results are available for this feature:
BLAST of DC900092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_NAUPA3.591e-2533.76Elongation factor Tu OS=Nautilia profundicola (str... [more]
EFTU_MYCPA3.591e-2536.02Elongation factor Tu OS=Mycobacterium paratubercul... [more]
EFTU_MYCA13.591e-2536.02Elongation factor Tu OS=Mycobacterium avium (strai... [more]
EFTU_MOOTA3.591e-2534.62Elongation factor Tu OS=Moorella thermoacetica (st... [more]
EFTU_LACS13.591e-2533.47Elongation factor Tu OS=Lactobacillus salivarius s... [more]
EFTU_ENTFA3.591e-2533.90Elongation factor Tu OS=Enterococcus faecalis GN=t... [more]
EFTU_EIMTE3.591e-2536.44Elongation factor Tu, apicoplast OS=Eimeria tenell... [more]
EFTU_BACHK3.591e-2533.62Elongation factor Tu OS=Bacillus thuringiensis sub... [more]
EFTU_BACCZ3.591e-2533.62Elongation factor Tu OS=Bacillus cereus (strain ZK... [more]
EFTU_BACCR3.591e-2533.62Elongation factor Tu OS=Bacillus cereus (strain AT... [more]

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Properties
Property NameValue
Genbank descriptionDC900092 VSS Citrus sinensis cDNA clone VS27V08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900092 ID=DC900092; Name=DC900092; organism=Citrus sinensis; type=EST; length=707bp
CTGGACATCGTGACTTTATTAAGAACATGATTACTGGTACTTCTCAGGCT
GATTGTGCTGTCCTTATCATCGACTCCACCACTGGTGGTTTTGAAGCTGG
TATCTCTAAGGATGGGCAGACCAGAGAGCACGCTCTACTTGCTTTCACCC
TTGGTGTGAAGCAAATGATTTGTTGCTGTAACAAGATGGATGCCACCACT
CCCAAGTATTCAAAGGCAAGATATGATGAAATTGTTAAGGAAGTCTCTTC
CTACTTGAAGAAGGTTGGCTACAACCCAGATAAGATTCCATTTGTCCCAA
TCTCTGGATTTGAGGGTGATAACATGATTGAGAGGTCCACAAACCTTGAC
TGGTACAAGGGCCCAACCCTTCTTGAAGCTCTTGACCAGATCAATGAACC
CAAGAGACCAACAGACAAGCCTCTCCGTCTCCCCCTTCAGGATGTCTACA
AGATTGGTGGTATTGGAACTGTCCCTGTTGGCCGTGTTGAAACTGGTGTA
CTCAAGCCCGGTATGATAGTCACATTCGGTCCATCTGGATTGACTACTGA
AGTTAAGTCAGTTGAGATGCACCATGAGTCTCTCCTGGAGGCACTTCCTG
GTGATAATGTGGGGTTCAACGNTAAGAATGNTTCAGTGAAGGATCTTAAG
CGTGGGTACGTTGCATCTAACTCCAGGATGATCCCGCCAGGGGGCATCCA
CTTCACC
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