DC900092

Overview
NameDC900092
Unique NameDC900092
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2880 contig Csv1_Contig2880:368..1074. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_BACAA (Elongation factor Tu OS=Bacillus anthracis (strain A0248) GN=tuf PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.591e-25
Identity = 77/229 (33.62%), Postives = 116/229 (50.66%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWY-KGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNS 674
            GH D++KNMITG +Q D  +L++ +  G          QTREH LL+  +GV  ++   NK D       +   + +  EV   L + G+  D IP +     +G  +       DW  K   L+  +D  I  P+R TDKP  +P++DV+ I G GTV  GRVE G++K G    I+       +T V  VEM  + L +A  GDN+G   +  + +D++RG V + S
Sbjct:   84 GHADYVKNMITGAAQMDGGILVVSAADGPMP-------QTREHILLSRQVGVPYIVVFLNKCDMVD---DEELLELVEMEVRDLLSEYGFPGDDIPVI-----KGSALKALQGEADWEAKIIELMAEVDAYIPTPERETDKPFLMPVEDVFSITGRGTVATGRVERGIVKVGDVVEIIGLAEENASTTVTGVEMFRKLLDQAQAGDNIGALLRGVAREDIQRGQVLAKS 297          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_STRMU (Elongation factor Tu OS=Streptococcus mutans GN=tuf PE=3 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 4.690e-25
Identity = 82/243 (33.74%), Postives = 118/243 (48.56%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVP---ISGFEGDNMIERSTNLDWYKGPTLLEAL----DQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPPGGIH 701
            GH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D       +   + +  E+   L +  +  D IP +    +   EGD   E            ++E +    D I +P+R TDKPL LP++DV+ I G GTV  GR++ G +K      IV          V  VEM  + L E + GDNVG   +     +++RG V     +  PG IH
Sbjct:   87 GHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKYLIVFMNKVDLVD---DEELLELVEMEIRDLLSEYDFPGDDIPVIQGSALKALEGDTAQE----------DIIMELMHTVDDYIPDPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGTVKVNDEVEIVGIRDDIQKAVVTGVEMFRKQLDEGIAGDNVGVLLRGIQRDEIERGQV-----LAKPGSIH 304          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_RICAH (Elongation factor Tu OS=Rickettsia akari (strain Hartford) GN=tuf PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.690e-25
Identity = 82/235 (34.89%), Postives = 118/235 (50.21%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFE---GDNMIERSTNLDWYKGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLT--TEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D+IKNMITG +Q D A+L++ +  G          QTREH LLA  +GV  M+   NK+D        A  + +  EV   L + G+   ++P +  S  +   G    E++ N        L++A+D  I  P R TDKP  +P++DV+ I G GTV  GRVE+G++K G  V       T  T    VEM  + L E   GDNVG   +    ++++RG V +    I P
Sbjct:   84 GHADYIKNMITGAAQMDGAILVVSAADGPML-------QTREHILLAKQVGVPAMVVFLNKVDVVD---DPALLELVEMEVRDLLLQYGFPAYEVPIIKGSALQALAGKPEGEKAIN-------ELMDAVDNYIPHPVRATDKPFLMPIEDVFSISGRGTVVTGRVESGIIKVGEEVEIVGLKETQKTTCTGVEMFRKLLDEGQAGDNVGILLRGTKREEVERGQVLAKPGSIKP 301          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_PROWI (Elongation factor Tu, plastid OS=Prototheca wickerhamii GN=tufA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.690e-25
Identity = 82/240 (34.17%), Postives = 124/240 (51.67%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPDKIPFVPISGFEG-----DNMIERSTNLDWY-KGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D++KNMITG +Q D A+L++    G          QT+EH LLA  +GV  ++   NK D    +       E+V+ EV   L++  +  D++P +P S         DN   +     W  K   L++ +D  I  PKR  +KP  + ++DV+ I G GTV  GRVE GV+K G    IV  G + +TT V  +EM  ++L E++ GDNVG   +     +++RG V +  + I P
Sbjct:   84 GHADYVKNMITGAAQMDGAILVVSGADGPMP-------QTKEHILLAKQVGVPNIVVFINKED----QVDDIELIELVELEVRETLQRYDFPGDEVPMIPGSALMALTALTDNPKIKPGENKWVDKIYNLMDIVDSYIPTPKRNIEKPFLMAIEDVFSITGRGTVATGRVERGVVKIGDSVEIVGLGATKITT-VTGLEMFQKTLDESIAGDNVGILLRGIQKTEIQRGMVLAKPKSITP 311          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_PORPU (Elongation factor Tu, chloroplastic OS=Porphyra purpurea GN=tufA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.690e-25
Identity = 80/240 (33.33%), Postives = 121/240 (50.42%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLD-----WY-KGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGL----TTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D       +   + +  E    L +  +  D IPFV  S       + ++T++      W  K  +L+EA+D  I  P+R  DK   + ++DV+ I G GTV  GR+E G++K G  +     GL    TT +  +EM  ++L E L GDN+G   +    KD++RG V +    I P
Sbjct:   84 GHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPTLVVFLNKEDQVD---DEELLELVELEGRELLSQYDFPGDDIPFVAGSALLALEAVTKNTSIKKGEDKWVDKIFSLMEAVDTYIPTPERDVDKTFLMAVEDVFSITGRGTVATGRIERGIIKVGDTIEI--VGLRETRTTTITGLEMFQKTLEEGLAGDNIGILLRGVQKKDIERGMVLAKPGTITP 311          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_PARD8 (Elongation factor Tu OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=tuf PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.690e-25
Identity = 76/224 (33.93%), Postives = 113/224 (50.45%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYV 662
            GH D++KNM+TG +Q D A++++ +T G          QTREH LLA  + V +++   NK D    +      +  ++E+ S+ +  G N   I    +    GD   E        K   L+EA D  I  P R  DKP  +P++DV+ I G GTV  GR+ETG++K G    I+  G +G  + V  VEM  + L +   GDNVG   +     ++KRG V
Sbjct:   84 GHADYVKNMVTGAAQMDGAIIVVAATDGPMP-------QTREHILLARQVNVPRLVVFMNKCDMVDDEEMLELVEMEMRELLSFYQFDGDNTPIIRGSALGALNGDAQWED-------KVMELMEACDTWIPLPPREIDKPFLMPVEDVFSITGRGTVATGRIETGIVKVGEEVQIIGLGAAGKKSVVTGVEMFRKLLDQGEAGDNVGLLLRGIDKNEIKRGMV 293          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_GRAFK (Elongation factor Tu OS=Gramella forsetii (strain KT0803) GN=tuf PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.690e-25
Identity = 74/233 (31.76%), Postives = 114/233 (48.93%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D++KNM+TG +Q D A+L++ +T G          QTREH LL   +G+ +++   NK+D    +      +  V+++ S+ +  G N   I    +   EGD    ++          L+EA+D  I  P+R  DK   +P++DV+ I G GTV  GR+ETGV   G    I+  G   LT+ +  VEM  + L     GDNVG   +      + RG V +    + P
Sbjct:   84 GHADYVKNMVTGAAQMDGAILVVAATDGPMP-------QTREHILLGRQVGIPRIVVFLNKVDLVDDEELLELVEMEVRDLLSFYEYDGDNGPVISGSALGALEGDEKWSKTVL-------ELMEAVDTWIELPERDVDKAFLMPIEDVFSITGRGTVATGRIETGVANTGDPIEIIGMGAGKLTSTITGVEMFRKILDRGEAGDNVGILLRGIEKSQISRGMVITKPGSVTP 302          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_GEOTN (Elongation factor Tu OS=Geobacillus thermodenitrificans (strain NG80-2) GN=tuf PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.690e-25
Identity = 79/236 (33.47%), Postives = 117/236 (49.58%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVP---ISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLK---PGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D++KNMITG +Q D A+L++ +  G          QTREH LL+  +GV  ++   NK D       +   + +  EV   L +  +  D++P +    +   EGD   E        K   L+ A+D+ I  P+R  DKP  +P++DV+ I G GTV  GRVE G LK   P  I+       +T V  VEM  + L +A  GDN+G   +  S  +++RG V +    I P
Sbjct:   84 GHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLSRQVGVPYIVVFLNKCDMVD---DEELLELVEMEVRDLLSEYDFPGDEVPVIKGSALKALEGDAQWEE-------KIVELMNAVDEYIPTPQREVDKPFMMPVEDVFSITGRGTVATGRVERGTLKVGDPVEIIGLSDEPKSTTVTGVEMFRKLLDQAEAGDNIGALLRGVSRDEVERGQVLAKPGSITP 302          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_GEOSW (Elongation factor Tu OS=Geobacillus sp. (strain WCH70) GN=tuf PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.690e-25
Identity = 80/236 (33.90%), Postives = 117/236 (49.58%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVP---ISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D++KNMITG +Q D A+L++ +  G          QTREH LL+  +GV  ++   NK D       +   + +  EV   L +  +  D++P +    +   EGD   E        K   L+ A+D+ I  P+R  DKP  +P++DV+ I G GTV  GRVE G LK G    IV       +T V  VEM  + L +A  GDN+G   +  S  +++RG V +    I P
Sbjct:   84 GHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLSRQVGVPYIVVFLNKCDMVD---DEELLELVEMEVRDLLSEYDFPGDEVPVIKGSALKALEGDPQWEE-------KIIELMNAVDEYIPTPQREIDKPFMMPIEDVFSITGRGTVATGRVERGTLKVGDAVEIVGLADEPKSTTVTGVEMFRKLLDQAEAGDNIGALLRGVSRDEVERGQVLAKPGSITP 302          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_DESVM (Elongation factor Tu OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=tuf PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.690e-25
Identity = 82/234 (35.04%), Postives = 117/234 (50.00%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKS----VEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D+IKNMITG +Q D  +L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L   G+  D IP +  S  +     +   + D      LL+A D  I EP+R  DKP  +P++DV+ I G GTV  GRVE G++K G  V     G+   VKS    VEM  + L +   GDN+G   +    +D++RG V +  + I P
Sbjct:   84 GHADYIKNMITGAAQMDGGILVVAATDGPMP-------QTREHILLARQVGVPYLVVFLNKCDMVD---DEELLELVELEVRELLSLYGFPGDDIPVIRGSALKALET-DDPNSADAAPVVALLDACDSYIPEPQRDIDKPFLMPIEDVFSISGRGTVVTGRVERGIIKVGEEVEI--VGIKDTVKSTCTGVEMFRKLLDQGQAGDNIGALLRGIKREDVERGQVLAAPKSIKP 304          
The following BLAST results are available for this feature:
BLAST of DC900092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_BACAA3.591e-2533.62Elongation factor Tu OS=Bacillus anthracis (strain... [more]
EFTU_STRMU4.690e-2533.74Elongation factor Tu OS=Streptococcus mutans GN=tu... [more]
EFTU_RICAH4.690e-2534.89Elongation factor Tu OS=Rickettsia akari (strain H... [more]
EFTU_PROWI4.690e-2534.17Elongation factor Tu, plastid OS=Prototheca wicker... [more]
EFTU_PORPU4.690e-2533.33Elongation factor Tu, chloroplastic OS=Porphyra pu... [more]
EFTU_PARD84.690e-2533.93Elongation factor Tu OS=Parabacteroides distasonis... [more]
EFTU_GRAFK4.690e-2531.76Elongation factor Tu OS=Gramella forsetii (strain ... [more]
EFTU_GEOTN4.690e-2533.47Elongation factor Tu OS=Geobacillus thermodenitrif... [more]
EFTU_GEOSW4.690e-2533.90Elongation factor Tu OS=Geobacillus sp. (strain WC... [more]
EFTU_DESVM4.690e-2535.04Elongation factor Tu OS=Desulfovibrio vulgaris (st... [more]

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Properties
Property NameValue
Genbank descriptionDC900092 VSS Citrus sinensis cDNA clone VS27V08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900092 ID=DC900092; Name=DC900092; organism=Citrus sinensis; type=EST; length=707bp
CTGGACATCGTGACTTTATTAAGAACATGATTACTGGTACTTCTCAGGCT
GATTGTGCTGTCCTTATCATCGACTCCACCACTGGTGGTTTTGAAGCTGG
TATCTCTAAGGATGGGCAGACCAGAGAGCACGCTCTACTTGCTTTCACCC
TTGGTGTGAAGCAAATGATTTGTTGCTGTAACAAGATGGATGCCACCACT
CCCAAGTATTCAAAGGCAAGATATGATGAAATTGTTAAGGAAGTCTCTTC
CTACTTGAAGAAGGTTGGCTACAACCCAGATAAGATTCCATTTGTCCCAA
TCTCTGGATTTGAGGGTGATAACATGATTGAGAGGTCCACAAACCTTGAC
TGGTACAAGGGCCCAACCCTTCTTGAAGCTCTTGACCAGATCAATGAACC
CAAGAGACCAACAGACAAGCCTCTCCGTCTCCCCCTTCAGGATGTCTACA
AGATTGGTGGTATTGGAACTGTCCCTGTTGGCCGTGTTGAAACTGGTGTA
CTCAAGCCCGGTATGATAGTCACATTCGGTCCATCTGGATTGACTACTGA
AGTTAAGTCAGTTGAGATGCACCATGAGTCTCTCCTGGAGGCACTTCCTG
GTGATAATGTGGGGTTCAACGNTAAGAATGNTTCAGTGAAGGATCTTAAG
CGTGGGTACGTTGCATCTAACTCCAGGATGATCCCGCCAGGGGGCATCCA
CTTCACC
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