DC900092

Overview
NameDC900092
Unique NameDC900092
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2880 contig Csv1_Contig2880:368..1074. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_ANADE (Elongation factor Tu OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.690e-25
Identity = 83/235 (35.32%), Postives = 117/235 (49.79%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVP---ISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLT--TEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D       K   D +  EV   L +  +  ++IP V    +   EGD        L       L+EA+D  I  P+R TDKP  +P++DV+ I G GTV  GRVE G++K G  V       T  T V  VEM  + L E   GDN+G   +    ++++RG V +    I P
Sbjct:   84 GHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFLNKVDMVD---DKELLDLVELEVRELLSEYDFPGNEIPIVKGSALKALEGDK-----GELGEQAIFKLMEAVDAYIPTPQRATDKPFLMPVEDVFSISGRGTVATGRVERGIVKVGEEVEVVGLKATAKTVVTGVEMFRKLLDEGRAGDNIGALLRGLKREEVERGQVLAKPGSITP 303          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: CYSN_ENTS8 (Sulfate adenylyltransferase subunit 1 OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=cysN PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.690e-25
Identity = 74/218 (33.94%), Postives = 114/218 (52.29%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRG 656
            GH  + +NM TG S  D A+L++D+  G  +       QTR H+ ++  LG+K ++   NKMD     +S+  ++ I ++  ++  ++  N D I FVP+S  EGDN+  +S N+ WY GPTLLE L+ I   +   ++PLR P+Q V +         G V  GV+K G  V   PSG+ + V  +      L EA  G+ V    K+    D+ RG
Sbjct:  116 GHEQYTRNMATGASTCDLAILLMDARKGVLD-------QTRRHSFISTLLGIKHLVVAVNKMDLVD--FSEETFERIRQDYLTFAGQLPGNLD-IRFVPLSALEGDNVAVQSQNMPWYTGPTLLEVLENIEIQRVVDEQPLRFPVQYVNRPNLDFRGYAGTVAGGVVKVGQRVKALPSGVESSVARIVTFDGDLEEAGAGEAVTLVLKDEI--DISRG 321          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_SYNR3 (Elongation factor Tu OS=Synechococcus sp. (strain RCC307) GN=tuf PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.125e-25
Identity = 81/237 (34.18%), Postives = 119/237 (50.21%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEG-DNMIERSTNLDWYKGPTLLEALD-QINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPPGGI 698
            GH D++KNMITG +Q D A+L+  +T G          QT+EH LLA  +GV  ++   NK D       +   + +  E+   L    +  D IP V +SG +  +   E    +D      L+ A+D  I EP R  DKP  + ++DV+ I G GTV  GR+E G++K G    IV    +  +T V  VEM  + L E + GDNVG   +    +D++RG V     ++ PG I
Sbjct:   84 GHADYVKNMITGAAQMDGAILVCAATDGPM-------AQTKEHILLAKQVGVPALVVALNKCDMVD---DEELIELVEMEIRELLSSYDFPGDDIPVVQVSGLKAIEGEAEWEAKID-----ELMAAVDANIPEPVREVDKPFLMAVEDVFSITGRGTVATGRIERGIVKVGEEIEIVGIKDTRKST-VTGVEMFRKLLDEGMAGDNVGLLLRGIQKEDIERGMV-----LVKPGSI 299          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_STRA5 (Elongation factor Tu OS=Streptococcus agalactiae serotype V GN=tuf PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.125e-25
Identity = 80/236 (33.90%), Postives = 116/236 (49.15%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVP---ISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D       +   + +  E+   L +  +  D +P +    +   EGD   E            L+  +D+ I EP+R TDKPL LP++DV+ I G GTV  GR++ G ++      IV          V  VEM  + L E L GDNVG   +     +++RG V +    I P
Sbjct:   87 GHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKVDLVD---DEELLELVEMEIRDLLSEYDFPGDDLPVIQGSALKALEGDEKYEDIIM-------ELMSTVDEYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGTVRVNDEVEIVGIKEDIQKAVVTGVEMFRKQLDEGLAGDNVGVLLRGVQRDEIERGQVLAKPGSINP 305          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_STRA3 (Elongation factor Tu OS=Streptococcus agalactiae serotype III GN=tuf PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.125e-25
Identity = 80/236 (33.90%), Postives = 116/236 (49.15%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVP---ISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D       +   + +  E+   L +  +  D +P +    +   EGD   E            L+  +D+ I EP+R TDKPL LP++DV+ I G GTV  GR++ G ++      IV          V  VEM  + L E L GDNVG   +     +++RG V +    I P
Sbjct:   87 GHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKVDLVD---DEELLELVEMEIRDLLSEYDFPGDDLPVIQGSALKALEGDEKYEDIIM-------ELMSTVDEYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGTVRVNDEVEIVGIKEDIQKAVVTGVEMFRKQLDEGLAGDNVGVLLRGVQRDEIERGQVLAKPGSINP 305          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_STRA1 (Elongation factor Tu OS=Streptococcus agalactiae serotype Ia GN=tuf PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.125e-25
Identity = 80/236 (33.90%), Postives = 116/236 (49.15%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVP---ISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D       +   + +  E+   L +  +  D +P +    +   EGD   E            L+  +D+ I EP+R TDKPL LP++DV+ I G GTV  GR++ G ++      IV          V  VEM  + L E L GDNVG   +     +++RG V +    I P
Sbjct:   87 GHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKVDLVD---DEELLELVEMEIRDLLSEYDFPGDDLPVIQGSALKALEGDEKYEDIIM-------ELMSTVDEYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGTVRVNDEVEIVGIKEDIQKAVVTGVEMFRKQLDEGLAGDNVGVLLRGVQRDEIERGQVLAKPGSINP 305          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_SACEN (Elongation factor Tu OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=tuf PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.125e-25
Identity = 81/231 (35.06%), Postives = 117/231 (50.65%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPDKIPFVPISGF---EGDNMIERSTNLDWYKGPTLLEALDQINE----PKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYV 662
            GH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D    +       E+V+ EV   L    +  D +P V +S     EGD         +W  G  ++E LD ++E    P+R TDKP  +P++DV+ I G GTV  GR+E GV+       +V      L T V  VEM  + L +   GDNVG   +    ++++RG V
Sbjct:   86 GHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKADMVDDE----EIIELVEMEVRELLSAQEFPGDDVPVVRVSALKALEGD--------AEW--GDKIMELLDAVDENVPDPERETDKPFLMPIEDVFSITGRGTVVTGRIERGVINVNEEVEMVGIKEKPLKTTVTGVEMFRKLLDQGQAGDNVGLLIRGIKREEVERGMV 295          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_OCHA4 (Elongation factor Tu OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.125e-25
Identity = 80/233 (34.33%), Postives = 118/233 (50.64%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLT--TEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D    +   A   E+V+ EV   L K  +  D++P +  S      + + S  L      +L+ A+D  I  P+RP D+P  +P++DV+ I G GTV  GRVE G++K G  V       T  T V  VEM  + L +   GDN+G   +    +D++RG V      + P
Sbjct:   79 GHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPAIVVFLNKCD----QVDDAELLELVELEVRELLSKYDFPGDEVPIIKGSALAA--LEDSSKELGEDAVRSLMAAVDDYIPTPERPIDQPFLMPIEDVFSISGRGTVVTGRVERGIVKVGEEVEIVGIKATAKTTVTGVEMFRKLLDQGQAGDNIGALIRGVGREDVERGQVLCKPGSVKP 298          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_MYCGA (Elongation factor Tu OS=Mycoplasma gallisepticum GN=tuf PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.125e-25
Identity = 83/238 (34.87%), Postives = 115/238 (48.32%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPDKIPFV---PISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLT----TEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D++KNMITG +Q D  +L++ +T G          QTREH LLA  +GV +M+   NK D            E+V+ EV   LK  G++ D  P +    +    G+   E   +        L++A+D+ I  P R  DKP  LP++D   I G GTV  GRVE G LK G  V     G+T      V  +EM  + L  A+ GDN G   +    KD++RG V +    I P
Sbjct:   84 GHADYVKNMITGAAQMDGGILVVSATDGPMP-------QTREHILLARQVGVPKMVVFLNKCDVA----DDPEMQELVEMEVRDLLKSYGFDGDNTPVIRGSALGALNGEPAWEEKIH-------ELMKAVDEYIPTPDREVDKPFLLPIEDTMTITGRGTVVTGRVERGQLKVGEEVEI--VGITDTRKVVVTGIEMFRKELDAAMAGDNAGILLRGVDRKDVQRGQVLAKPGSITP 301          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_LEUCK (Elongation factor Tu OS=Leuconostoc citreum (strain KM20) GN=tuf PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.125e-25
Identity = 84/243 (34.57%), Postives = 120/243 (49.38%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVP---ISGFEGD----NMIERSTNLDWYKGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGM---IVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPPGGI 698
            GH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV+ ++   NK D       +   + +  EV   L +  +  D IP +    +   EGD     +IE            L++ +D  I EPKR TDKP  +P++DV+ I G GTV  GRV+ GVL  G    IV        T V  +EM  ++L EA  GDN+G   +     +++RG V     +  PG I
Sbjct:   84 GHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVEYLVVFLNKTDLVD---DEELVELVEMEVRELLSEYDFPGDDIPVIKGSALKALEGDPEQVKVIEE-----------LMDTVDSYIPEPKRETDKPFLMPVEDVFTITGRGTVASGRVDRGVLTTGTEIEIVGLKDEIKKTTVTGIEMFRKTLDEAQAGDNIGALLRGVDRNEIERGQV-----LAKPGSI 300          
The following BLAST results are available for this feature:
BLAST of DC900092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_ANADE4.690e-2535.32Elongation factor Tu OS=Anaeromyxobacter dehalogen... [more]
CYSN_ENTS84.690e-2533.94Sulfate adenylyltransferase subunit 1 OS=Enterobac... [more]
EFTU_SYNR36.125e-2534.18Elongation factor Tu OS=Synechococcus sp. (strain ... [more]
EFTU_STRA56.125e-2533.90Elongation factor Tu OS=Streptococcus agalactiae s... [more]
EFTU_STRA36.125e-2533.90Elongation factor Tu OS=Streptococcus agalactiae s... [more]
EFTU_STRA16.125e-2533.90Elongation factor Tu OS=Streptococcus agalactiae s... [more]
EFTU_SACEN6.125e-2535.06Elongation factor Tu OS=Saccharopolyspora erythrae... [more]
EFTU_OCHA46.125e-2534.33Elongation factor Tu OS=Ochrobactrum anthropi (str... [more]
EFTU_MYCGA6.125e-2534.87Elongation factor Tu OS=Mycoplasma gallisepticum G... [more]
EFTU_LEUCK6.125e-2534.57Elongation factor Tu OS=Leuconostoc citreum (strai... [more]

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Properties
Property NameValue
Genbank descriptionDC900092 VSS Citrus sinensis cDNA clone VS27V08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900092 ID=DC900092; Name=DC900092; organism=Citrus sinensis; type=EST; length=707bp
CTGGACATCGTGACTTTATTAAGAACATGATTACTGGTACTTCTCAGGCT
GATTGTGCTGTCCTTATCATCGACTCCACCACTGGTGGTTTTGAAGCTGG
TATCTCTAAGGATGGGCAGACCAGAGAGCACGCTCTACTTGCTTTCACCC
TTGGTGTGAAGCAAATGATTTGTTGCTGTAACAAGATGGATGCCACCACT
CCCAAGTATTCAAAGGCAAGATATGATGAAATTGTTAAGGAAGTCTCTTC
CTACTTGAAGAAGGTTGGCTACAACCCAGATAAGATTCCATTTGTCCCAA
TCTCTGGATTTGAGGGTGATAACATGATTGAGAGGTCCACAAACCTTGAC
TGGTACAAGGGCCCAACCCTTCTTGAAGCTCTTGACCAGATCAATGAACC
CAAGAGACCAACAGACAAGCCTCTCCGTCTCCCCCTTCAGGATGTCTACA
AGATTGGTGGTATTGGAACTGTCCCTGTTGGCCGTGTTGAAACTGGTGTA
CTCAAGCCCGGTATGATAGTCACATTCGGTCCATCTGGATTGACTACTGA
AGTTAAGTCAGTTGAGATGCACCATGAGTCTCTCCTGGAGGCACTTCCTG
GTGATAATGTGGGGTTCAACGNTAAGAATGNTTCAGTGAAGGATCTTAAG
CGTGGGTACGTTGCATCTAACTCCAGGATGATCCCGCCAGGGGGCATCCA
CTTCACC
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