DC900092

Overview
NameDC900092
Unique NameDC900092
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2880 contig Csv1_Contig2880:368..1074. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_GEOUR (Elongation factor Tu OS=Geobacter uraniireducens (strain Rf4) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.125e-25
Identity = 81/235 (34.47%), Postives = 114/235 (48.51%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVP---ISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLT--TEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D       +   + +  E+   L    +  D IP +    +   EGD     +  L       L+EA+D  I EP R  DKP  +P++DV+ I G GTV  GRVE G++K G  V       T  T V  VEM  + L E   GDN+G   +    +D++RG V +    I P
Sbjct:   84 GHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFLNKADMVD---DEELLELVELEIRELLSSYDFPGDDIPIIKGSALKALEGD-----TGELGEQAIMKLMEAVDSYIPEPVRAIDKPFLMPVEDVFSISGRGTVATGRVERGIVKVGEEVEIVGMKATAKTTVTGVEMFRKLLDEGRAGDNIGALLRGVKREDIERGQVLAKPGSITP 303          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_CYAA5 (Elongation factor Tu OS=Cyanothece sp. (strain ATCC 51142) GN=tuf PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.125e-25
Identity = 78/238 (32.77%), Postives = 118/238 (49.58%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNL-----DWYKGPT-LLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFG--PSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L +  +  D IP +  S     N +  + N+     +W      L++A+D  I EP+R  DKP  + ++DV+ I G GTV  GR+E G +K G  +         +T V  VEM  ++L E + GDNVG   +    +D++RG V +    I P
Sbjct:   84 GHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPSLVVFLNKKDQVD---DEELLELVELEVRELLSEYDFPGDDIPIISGSALMAVNALIDNPNIKPGENEWTDQVLELMKAVDDNIPEPEREIDKPFLMAVEDVFSISGRGTVATGRIERGKVKVGETIEIVGIRDTRSTTVTGVEMFQKTLDEGMAGDNVGLLLRGIKKEDIERGMVIAKPGSITP 311          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_CHLTE (Elongation factor Tu OS=Chlorobium tepidum GN=tuf PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.125e-25
Identity = 80/236 (33.90%), Postives = 116/236 (49.15%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVP---ISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D+IKNMITG +Q D A+L++  T G          QTREH LLA  + V  ++   NK+D   P+  +     +  E+   L + G+  D IP +    +   EGD   E+           L++A+D  I +P R  DKP  +P++DV+ I G GTV  GR+E G +K G    IV   P+  +  V  +EM  ++L E   GDN G   +      L+RG V +    I P
Sbjct:   84 GHADYIKNMITGAAQMDGAILVVAGTDGPMP-------QTREHILLARQVNVPALVVFLNKVDIADPELLEL----VEMELRELLTEYGFPGDDIPIIKGSALKALEGDPEAEKQIM-------ELMDAVDSYIPQPVRDIDKPFLMPVEDVFSISGRGTVGTGRIERGRIKVGDEVEIVGIKPTAKSV-VTGIEMFQKTLDEGQAGDNAGLLLRGVDKNALERGMVIAKPGSITP 300          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_BUCMH (Elongation factor Tu (Fragment) OS=Buchnera aphidicola subsp. Melaphis rhois GN=tuf PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.125e-25
Identity = 84/240 (35.00%), Postives = 115/240 (47.92%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFV---PISGFEGD-----NMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D+IKNMITG +Q D A+L++ +T G          QTREH LL   +GV  ++   NK D       +   + +  EV   L +  +  DK P +    +   EGD      +I+ +  LD Y           I EPKR  D+P  LP++DV+ I G GTV  GRVE G++K G    IV   P+  T     VEM  + L E   G+NVG   +     D++RG V S    I P
Sbjct:   65 GHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLGRQVGVPYIVVFLNKCDMVD---DEELLELVEMEVRDLLTQYDFPGDKTPIIRGSALKALEGDCIWESKIIDLANILDTY-----------IPEPKRSIDQPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKPTSKTI-CTGVEMFRKLLDEGRAGENVGVLLRGTKRDDIERGQVLSKPGTITP 282          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_ANOFW (Elongation factor Tu OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=tuf PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.125e-25
Identity = 79/236 (33.47%), Postives = 117/236 (49.58%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVP---ISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D++KNMITG +Q D A+L++ +  G          QTREH LL+  +GV  ++   NK D       +   + +  EV   L +  +  D++P +    +   EGD   E        K   L+ A+D+ I  P+R  DKP  +P++DV+ I G GTV  GRVE G+LK G    I+        T V  VEM  + L +A  GDN+G   +  S  +++RG V +    I P
Sbjct:   84 GHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLSRQVGVPYIVVFLNKCDMVD---DEELLELVEMEVRDLLSEYDFPGDEVPVIKGSALKALEGDPAWEA-------KIIELMNAVDEYIPTPQREVDKPFMMPVEDVFSITGRGTVATGRVERGILKVGDQVEIIGLSEEPKATTVTGVEMFRKLLDQAEAGDNIGALLRGVSRDEVQRGQVLAKPGTITP 302          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU2_BARBK (Elongation factor Tu 2 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.125e-25
Identity = 82/234 (35.04%), Postives = 120/234 (51.28%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D    +   A   E+V+ EV   L K  +  D IP V  S        ++S   D  +   L+  +D+ I  P+RP D+   +P++DV+ I G GTV  GRVE GV+K G    IV   P+  TT V  VEM  + L +   GDN+G   +    + ++RG V +    + P
Sbjct:   79 GHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPAIVVFLNKVD----QVDDAELLELVELEVRELLSKYDFPGDDIPIVKGSALAALEDSDKSIGEDAVR--LLMSEVDRYIPTPERPVDQSFLMPIEDVFSISGRGTVVTGRVERGVVKVGEEIEIVGIRPTSKTT-VTGVEMFRKLLDQGQAGDNIGALLRGIDREGIERGQVLAKPGSVTP 298          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU1_BARBK (Elongation factor Tu 1 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.125e-25
Identity = 82/234 (35.04%), Postives = 120/234 (51.28%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D    +   A   E+V+ EV   L K  +  D IP V  S        ++S   D  +   L+  +D+ I  P+RP D+   +P++DV+ I G GTV  GRVE GV+K G    IV   P+  TT V  VEM  + L +   GDN+G   +    + ++RG V +    + P
Sbjct:   79 GHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPAIVVFLNKVD----QVDDAELLELVELEVRELLSKYDFPGDDIPIVKGSALAALEDSDKSIGEDAVR--LLMSEVDRYIPTPERPVDQSFLMPIEDVFSISGRGTVVTGRVERGVVKVGEEIEIVGIRPTSKTT-VTGVEMFRKLLDQGQAGDNIGALLRGIDREGIERGQVLAKPGSVTP 298          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_YEAST (Elongation factor Tu, mitochondrial OS=Saccharomyces cerevisiae GN=TUF1 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.000e-25
Identity = 78/227 (34.36%), Postives = 114/227 (50.22%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFV---PISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYV 662
            GH D+IKNMITG +Q D A++++ +T G          QTREH LLA  +GV+ ++   NK+D           + +  E+   L + G++ D  P +    +   EG     R   +       LL+A+D+ I  P+R  +KP  +P++D++ I G GTV  GRVE G LK G    IV    + L T V  +EM  + L  A+ GDN G   +      LKRG V
Sbjct:  120 GHADYIKNMITGAAQMDGAIIVVAATDGQMP-------QTREHLLLARQVGVQHIVVFVNKVDTID---DPEMLELVEMEMRELLNEYGFDGDNAPIIMGSALCALEG-----RQPEIGEQAIMKLLDAVDEYIPTPERDLNKPFLMPVEDIFSISGRGTVVTGRVERGNLKKGEELEIVGHNSTPLKTTVTGIEMFRKELDSAMAGDNAGVLLRGIRRDQLKRGMV 331          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_STROR (Elongation factor Tu OS=Streptococcus oralis GN=tuf PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.000e-25
Identity = 79/236 (33.47%), Postives = 117/236 (49.58%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVP---ISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D       +   + +  E+   L +  +  D +P +    +   EGD+  E            L+  +D+ I EP+R T+KPL LP++DV+ I G GTV  GR++ G ++      IV          V  VEM  + L E L GDNVG   +     +++RG V +    I P
Sbjct:   87 GHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKIDLVD---DEELLELVEMEIRDLLSEYDFPGDDLPVIQGSALKALEGDSKYEDIIM-------ELMNTVDEYIPEPERDTEKPLLLPVEDVFSITGRGTVASGRIDRGTVRVNDEIEIVGIKEETQKAVVTGVEMFRKQLDEGLAGDNVGVLLRGVQRDEIERGQVIAKPGSINP 305          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_RAT (Elongation factor Tu, mitochondrial OS=Rattus norvegicus GN=Tufm PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.000e-25
Identity = 82/236 (34.75%), Postives = 119/236 (50.42%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG--MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPPGGI 698
            GH D++KNMITGT+  D  +L++ +  G          QTREH LLA  +GV+ ++   NK DA       +   E+V+ E+   L + GY  ++ P +  S      + +R   L       LL+A+D  I  P R  +KP  LP++ VY I G GTV  G +E G+LK G    +      + T V  +EM H+SL  A  GDN+G   +    +DL+RG V     M+ PG I
Sbjct:  129 GHADYVKNMITGTAPLDGCILVVAANDGPMP-------QTREHLLLAKQIGVEHVVVYVNKADAV----QDSEMVELVELEIRELLTEFGYKGEETPVIVGSALCA--LEQRDPELGVKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECELLGHNKNIRTVVTGIEMFHKSLERAEAGDNLGALVRGLKREDLRRGLV-----MVKPGSI 346          
The following BLAST results are available for this feature:
BLAST of DC900092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_GEOUR6.125e-2534.47Elongation factor Tu OS=Geobacter uraniireducens (... [more]
EFTU_CYAA56.125e-2532.77Elongation factor Tu OS=Cyanothece sp. (strain ATC... [more]
EFTU_CHLTE6.125e-2533.90Elongation factor Tu OS=Chlorobium tepidum GN=tuf ... [more]
EFTU_BUCMH6.125e-2535.00Elongation factor Tu (Fragment) OS=Buchnera aphidi... [more]
EFTU_ANOFW6.125e-2533.47Elongation factor Tu OS=Anoxybacillus flavithermus... [more]
EFTU2_BARBK6.125e-2535.04Elongation factor Tu 2 OS=Bartonella bacilliformis... [more]
EFTU1_BARBK6.125e-2535.04Elongation factor Tu 1 OS=Bartonella bacilliformis... [more]
EFTU_YEAST8.000e-2534.36Elongation factor Tu, mitochondrial OS=Saccharomyc... [more]
EFTU_STROR8.000e-2533.47Elongation factor Tu OS=Streptococcus oralis GN=tu... [more]
EFTU_RAT8.000e-2534.75Elongation factor Tu, mitochondrial OS=Rattus norv... [more]

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Properties
Property NameValue
Genbank descriptionDC900092 VSS Citrus sinensis cDNA clone VS27V08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900092 ID=DC900092; Name=DC900092; organism=Citrus sinensis; type=EST; length=707bp
CTGGACATCGTGACTTTATTAAGAACATGATTACTGGTACTTCTCAGGCT
GATTGTGCTGTCCTTATCATCGACTCCACCACTGGTGGTTTTGAAGCTGG
TATCTCTAAGGATGGGCAGACCAGAGAGCACGCTCTACTTGCTTTCACCC
TTGGTGTGAAGCAAATGATTTGTTGCTGTAACAAGATGGATGCCACCACT
CCCAAGTATTCAAAGGCAAGATATGATGAAATTGTTAAGGAAGTCTCTTC
CTACTTGAAGAAGGTTGGCTACAACCCAGATAAGATTCCATTTGTCCCAA
TCTCTGGATTTGAGGGTGATAACATGATTGAGAGGTCCACAAACCTTGAC
TGGTACAAGGGCCCAACCCTTCTTGAAGCTCTTGACCAGATCAATGAACC
CAAGAGACCAACAGACAAGCCTCTCCGTCTCCCCCTTCAGGATGTCTACA
AGATTGGTGGTATTGGAACTGTCCCTGTTGGCCGTGTTGAAACTGGTGTA
CTCAAGCCCGGTATGATAGTCACATTCGGTCCATCTGGATTGACTACTGA
AGTTAAGTCAGTTGAGATGCACCATGAGTCTCTCCTGGAGGCACTTCCTG
GTGATAATGTGGGGTTCAACGNTAAGAATGNTTCAGTGAAGGATCTTAAG
CGTGGGTACGTTGCATCTAACTCCAGGATGATCCCGCCAGGGGGCATCCA
CTTCACC
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