DC900092

Overview
NameDC900092
Unique NameDC900092
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2880 contig Csv1_Contig2880:368..1074. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_BRAJA (Elongation factor Tu OS=Bradyrhizobium japonicum GN=tuf PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.045e-24
Identity = 78/241 (32.37%), Postives = 114/241 (47.30%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEG----------DNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLT--TEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D           + +  EV   L K  +  DKIP +  S              D ++E   N+D Y           I +P+RP D+P  +P++DV+ I G GTV  GRVE G++K G  +       T  T V  VEM  + L +   GDN+G   +    +D++RG V +    + P
Sbjct:   84 GHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPALVVFLNKCDMVD---DPELLELVELEVRELLSKYEFPGDKIPIIKGSALAALEDSDKKLGHDAILELMRNVDEY-----------IPQPERPIDQPFLMPVEDVFSISGRGTVVTGRVERGIVKVGEEIEIVGLRATQKTTVTGVEMFRKLLDQGQAGDNIGALLRGTKREDVERGQVLAKPGSVKP 303          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_TREDE (Elongation factor Tu OS=Treponema denticola GN=tuf PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.365e-24
Identity = 83/238 (34.87%), Postives = 127/238 (53.36%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATT-PKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPPGGIH 701
            GH D++KNMITG +Q D A+L++ +         S   QT+EH LLA  +GV  +I   NK+D    P+  +   +E+ + ++SY    G+ P+  P +  S F+   + E +T  D      LL+ +D+   +P R +DKP  LP++D++ I G GTV  GR+E GV+K      IV   P+  T  V  +EM ++ L E   GDNVG   +    K+++RG V     +  PG IH
Sbjct:   84 GHADYVKNMITGAAQMDGAILVVSAPD-------SVMPQTKEHLLLARQVGVPSIIVFLNKVDLVDDPELVELVEEEVRETLTSY----GF-PEDTPIIKGSAFKA--LQEGATAEDTACIEELLKTMDEYFKDPVRDSDKPFLLPIEDIFTIQGRGTVVTGRIERGVIKMNEEVEIVGIKPTKKTV-VTGIEMFNKLLDEGEAGDNVGLLLRGIEKKEVERGQV-----LAKPGSIH 301          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_SALTO (Elongation factor Tu OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=tuf PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.365e-24
Identity = 84/238 (35.29%), Postives = 117/238 (49.16%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGF---EGDNMIERSTNLDWY-KGPTLLEALD-QINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPPG 692
            GH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L    Y  D +P V +S     EGD         +W  K   L+ A+D  I +P+R  +KP  +P++DV+ I G GTV  GR E GVLKP     +V        T    +EM  + L EA  G+NVG   +    +D++RG V     +I PG
Sbjct:   86 GHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYIVVALNKSDMVD---DEELLELVELEVRELLSSQEYPGDDLPVVRVSALKALEGDP--------EWAGKLMELMTAVDTSIPQPEREIEKPFLMPIEDVFTITGRGTVVTGRAERGVLKPNEEVELVGIREKSTKTTCTGIEMFRKLLDEARAGENVGLLLRGVKREDVERGMV-----VIKPG 300          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_RUBXD (Elongation factor Tu OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.365e-24
Identity = 84/236 (35.59%), Postives = 117/236 (49.58%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFV---PISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D           + +  EV   L +  +  D++P V    +   EGD        L       LLEALD+ I EPKR  DKP  L ++DV+ I G GTV  GRVE G L+      IV   P+  T  V  +EM ++S+ EA  GDN+G   +     +++RG V +    I P
Sbjct:   88 GHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVYLNKADMVD---DPELLELVEMEVRELLSEYEFPGDEVPVVVGSALKALEGDE-----GELGEQSILKLLEALDEYIPEPKRDIDKPFLLAVEDVFSIQGRGTVATGRVEQGKLRLNEEVEIVGIRPTRKTV-VTGIEMFNKSMQEAQAGDNIGVLLRGIKRDEIERGQVLAAPGSITP 307          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_NITHX (Elongation factor Tu OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=tuf PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.365e-24
Identity = 81/234 (34.62%), Postives = 118/234 (50.43%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERST-NLDWYKGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D           + +  EV   L K  +  D IP +  S      ++E S   L       L++A+D  I +P+RP D+P  +P++DV+ I G GTV  GRVE G++K G    IV   P+  TT V  VEM  + L +   GDN+G   +    +D++RG V      + P
Sbjct:   84 GHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPAIVVFLNKCDMVD---DPELLELVEMEVRELLSKYDFPGDDIPIIKGSALA---VLENSDPKLGHDAVLELMKAVDAYIPQPERPVDQPFLMPVEDVFSISGRGTVVTGRVERGIVKVGEEIEIVGIRPTQKTT-VTGVEMFRKLLDQGQAGDNIGALLRGTKREDVERGQVLCKPGSVKP 303          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_MYCVP (Elongation factor Tu OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=tuf PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.365e-24
Identity = 81/227 (35.68%), Postives = 115/227 (50.66%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGF---EGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYV 662
            GH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L    ++ ++ P V +S     EGD    +S          L+EA+D+ I +P R TDKP  +P++DV+ I G GTV  GRVE G++       IV   P    T V  VEM  + L +   GDNVG   +    +D++RG V
Sbjct:   86 GHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKADMVD---DEELIELVEMEVRELLAAQDFD-EEAPVVKVSALKALEGDEKWVKSVE-------ELMEAVDESIPDPVRETDKPFLMPVEDVFTITGRGTVVTGRVERGIINVNEEVEIVGIRPDTTKTTVTGVEMFRKLLDQGQAGDNVGLLLRGIKREDVERGQV 294          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_MYCSS (Elongation factor Tu OS=Mycobacterium sp. (strain MCS) GN=tuf PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.365e-24
Identity = 82/227 (36.12%), Postives = 115/227 (50.66%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGF---EGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYV 662
            GH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK DA      +   + +  EV   L    ++ D  P V +S     EGD    +S          L++A+D+ I +P R TD+P  +P++DV+ I G GTV  GRVE GV+       IV   P    T V  VEM  + L +   GDNVG   +    +D++RG V
Sbjct:   86 GHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKADAVD---DEELIELVEMEVRELLAAQDFDEDA-PVVRVSALKALEGDEKWVKSVE-------ELMDAVDESIPDPVRDTDRPFLMPVEDVFTITGRGTVVTGRVERGVVNVNEEVEIVGIRPGTTKTTVTGVEMFRKLLDQGQAGDNVGLLLRGIKREDVERGQV 294          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_MYCSK (Elongation factor Tu OS=Mycobacterium sp. (strain KMS) GN=tuf PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.365e-24
Identity = 82/227 (36.12%), Postives = 115/227 (50.66%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGF---EGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYV 662
            GH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK DA      +   + +  EV   L    ++ D  P V +S     EGD    +S          L++A+D+ I +P R TD+P  +P++DV+ I G GTV  GRVE GV+       IV   P    T V  VEM  + L +   GDNVG   +    +D++RG V
Sbjct:   86 GHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKADAVD---DEELIELVEMEVRELLAAQDFDEDA-PVVRVSALKALEGDEKWVKSVE-------ELMDAVDESIPDPVRDTDRPFLMPVEDVFTITGRGTVVTGRVERGVVNVNEEVEIVGIRPGTTKTTVTGVEMFRKLLDQGQAGDNVGLLLRGIKREDVERGQV 294          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_MYCSJ (Elongation factor Tu OS=Mycobacterium sp. (strain JLS) GN=tuf PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.365e-24
Identity = 82/227 (36.12%), Postives = 115/227 (50.66%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGF---EGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYV 662
            GH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK DA      +   + +  EV   L    ++ D  P V +S     EGD    +S          L++A+D+ I +P R TD+P  +P++DV+ I G GTV  GRVE GV+       IV   P    T V  VEM  + L +   GDNVG   +    +D++RG V
Sbjct:   86 GHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKADAVD---DEELIELVEMEVRELLAAQDFDEDA-PVVRVSALKALEGDEKWVKSVE-------ELMDAVDESIPDPVRDTDRPFLMPVEDVFTITGRGTVVTGRVERGVVNVNEEVEIVGIRPGTTKTTVTGVEMFRKLLDQGQAGDNVGLLLRGIKREDVERGQV 294          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_MICLU (Elongation factor Tu OS=Micrococcus luteus GN=tuf PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.365e-24
Identity = 82/240 (34.17%), Postives = 117/240 (48.75%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGF---EGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGL----TTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPPGGI 698
            GH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L    ++ D+ P +  S     EGD    +S          L++A+D+ I +P R  DKP  +P++DV+ I G GTV  GR E G LK    V     G+     T V  +EM H+ L EA  G+N G   +     D++RG V     ++ PG I
Sbjct:   86 GHADYIKNMITGAAQMDGAILVVAATDGPM-------AQTREHVLLARQVGVPALLVALNKSDMVE---DEELLERVEMEVRQLLSSRSFDVDEAPVIRTSALKALEGDPQWVKSVE-------DLMDAVDEYIPDPVRDKDKPFLMPIEDVFTITGRGTVVTGRAERGTLKINSEVEI--VGIRDVQKTTVTGIEMFHKQLDEAWAGENCGLLVRGLKRDDVERGQV-----LVEPGSI 301          
The following BLAST results are available for this feature:
BLAST of DC900092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_BRAJA1.045e-2432.37Elongation factor Tu OS=Bradyrhizobium japonicum G... [more]
EFTU_TREDE1.365e-2434.87Elongation factor Tu OS=Treponema denticola GN=tuf... [more]
EFTU_SALTO1.365e-2435.29Elongation factor Tu OS=Salinispora tropica (strai... [more]
EFTU_RUBXD1.365e-2435.59Elongation factor Tu OS=Rubrobacter xylanophilus (... [more]
EFTU_NITHX1.365e-2434.62Elongation factor Tu OS=Nitrobacter hamburgensis (... [more]
EFTU_MYCVP1.365e-2435.68Elongation factor Tu OS=Mycobacterium vanbaalenii ... [more]
EFTU_MYCSS1.365e-2436.12Elongation factor Tu OS=Mycobacterium sp. (strain ... [more]
EFTU_MYCSK1.365e-2436.12Elongation factor Tu OS=Mycobacterium sp. (strain ... [more]
EFTU_MYCSJ1.365e-2436.12Elongation factor Tu OS=Mycobacterium sp. (strain ... [more]
EFTU_MICLU1.365e-2434.17Elongation factor Tu OS=Micrococcus luteus GN=tuf ... [more]

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Properties
Property NameValue
Genbank descriptionDC900092 VSS Citrus sinensis cDNA clone VS27V08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900092 ID=DC900092; Name=DC900092; organism=Citrus sinensis; type=EST; length=707bp
CTGGACATCGTGACTTTATTAAGAACATGATTACTGGTACTTCTCAGGCT
GATTGTGCTGTCCTTATCATCGACTCCACCACTGGTGGTTTTGAAGCTGG
TATCTCTAAGGATGGGCAGACCAGAGAGCACGCTCTACTTGCTTTCACCC
TTGGTGTGAAGCAAATGATTTGTTGCTGTAACAAGATGGATGCCACCACT
CCCAAGTATTCAAAGGCAAGATATGATGAAATTGTTAAGGAAGTCTCTTC
CTACTTGAAGAAGGTTGGCTACAACCCAGATAAGATTCCATTTGTCCCAA
TCTCTGGATTTGAGGGTGATAACATGATTGAGAGGTCCACAAACCTTGAC
TGGTACAAGGGCCCAACCCTTCTTGAAGCTCTTGACCAGATCAATGAACC
CAAGAGACCAACAGACAAGCCTCTCCGTCTCCCCCTTCAGGATGTCTACA
AGATTGGTGGTATTGGAACTGTCCCTGTTGGCCGTGTTGAAACTGGTGTA
CTCAAGCCCGGTATGATAGTCACATTCGGTCCATCTGGATTGACTACTGA
AGTTAAGTCAGTTGAGATGCACCATGAGTCTCTCCTGGAGGCACTTCCTG
GTGATAATGTGGGGTTCAACGNTAAGAATGNTTCAGTGAAGGATCTTAAG
CGTGGGTACGTTGCATCTAACTCCAGGATGATCCCGCCAGGGGGCATCCA
CTTCACC
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