DC900092

Overview
NameDC900092
Unique NameDC900092
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2880 contig Csv1_Contig2880:368..1074. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_MYCA9 (Elongation factor Tu OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=tuf PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.782e-24
Identity = 81/228 (35.53%), Postives = 115/228 (50.44%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGF---EGDNMIERSTNLDWYKGPT-LLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYV 662
            GH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L    ++ D  P V +S     EGD         +W K    L++A+D+ I +P R T+KP  +P++DV+ I G GTV  GRVE GV+       IV    +   T V  VEM  + L +   GDNVG   +    +D++RG V
Sbjct:   86 GHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKSDMVD---DEELLELVEMEVRELLSSQDFDGDNAPVVRVSALKALEGD--------AEWGKTVADLMDAVDESIPDPVRETEKPFLMPVEDVFTITGRGTVVTGRVERGVINVNEDVEIVGIKDTTTKTTVTGVEMFRKLLDQGQAGDNVGLLVRGVKREDVERGQV 295          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_CHLAT (Elongation factor Tu, chloroplastic OS=Chlorokybus atmophyticus GN=tufA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.782e-24
Identity = 81/240 (33.75%), Postives = 123/240 (51.25%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNL-----DWY-KGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D++KNMITG +Q D A+L++    G          QT+EH LLA  +GV  ++   NK D    +   A   E+V+ EV   L    +  D++P V  S       + ++  +      W  K  +L++ +D  I  P+R TDKP  + ++DV+ I G GTV  GRVE G +K G    IV    + +T+ V  +EM  ++L E++ GDNVG   +    KD++RG V +    I P
Sbjct:   84 GHADYVKNMITGAAQMDGAILVVSGADGPMP-------QTKEHILLAKQVGVPNVVVFLNKED----QVDDAELLELVELEVRETLSDYDFPGDEVPVVAGSALLALESLTQNPKIVKGENKWVDKIYSLMDQVDAYIPTPERDTDKPFLMAVEDVFSITGRGTVATGRVERGTVKVGEAIEIVGLREAPVTSIVTGLEMFQKTLEESVAGDNVGILLRGIQKKDIERGMVLAKPGTIKP 312          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_AZOC5 (Elongation factor Tu OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.782e-24
Identity = 80/233 (34.33%), Postives = 116/233 (49.79%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D           + +  EV   L K  +  D IP V  S      +  +S  L       L+  +D+ I +P+RP D+P  +P++DV+ I G GTV  GRVE G++K G    IV   P+  TT V  +EM  + L +   GDNVG   +    +D++RG V      + P
Sbjct:   85 GHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPALVVFLNKCDMVD---DPELLELVELEVRELLSKYDFPGDDIPIVRGSALCA--LENKSPELGAEAILKLMAEVDKYIPQPERPVDQPFLMPIEDVFSISGRGTVVTGRVERGIVKVGDEVEIVGIRPTVKTT-VTGIEMFRKLLDQGQAGDNVGVLLRGTKREDVERGQVVCKPGSVKP 304          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_ACHLI (Elongation factor Tu OS=Acholeplasma laidlawii (strain PG-8A) GN=tuf PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.782e-24
Identity = 78/233 (33.48%), Postives = 119/233 (51.07%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWY-KGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG-MIVTFGPSGL-TTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D++KNMITG +Q D A+L++ +  G          QTREH LL+  +GV +++   NK D       +   D +  EV   L +  +  D IP +     +G  +       +W  K   L++A+D  I+ P R TDKP  +P++DV+ I G GTV  GRV+ G++K G  +   G +   TT V  VEM  + L +A  GDN+G   +    + ++RG V S    + P
Sbjct:   84 GHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLSRQVGVPKLVVFLNKADLVD---DEELLDLVEMEVRELLSEYDFPGDDIPVI-----KGSALGALEGKPEWVAKVEELMDAVDAYIDTPLRATDKPFMMPVEDVFTITGRGTVATGRVDRGIVKVGDQVEIVGITDTKTTTVTGVEMFRKLLDQAEAGDNIGALLRGVDREGVERGQVLSKPGTVKP 301          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTM_ARATH (Elongation factor Tu, mitochondrial OS=Arabidopsis thaliana GN=TUFA PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.782e-24
Identity = 80/230 (34.78%), Postives = 116/230 (50.43%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFV---PISGFEGDN-MIERSTNLDWYKGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTF-----GPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYV 662
            GH D++KNMITG +Q D  +L++    G          QT+EH LLA  +GV  ++C  NK+D           +  ++E+ S+ K  G   D IP +    +S  +G N  I R   L       L++A+D+ I +P R  DKP  +P++DV+ I G GTV  GR+E GV+K G  V       G   L + V  VEM  + L     GDNVG   +    +D++RG V
Sbjct:  139 GHADYVKNMITGAAQMDGGILVVSGPDGPMP-------QTKEHILLARQVGVPSLVCFLNKVDVVDDPELLELVEMELRELLSFYKFPG---DDIPIIRGSALSALQGTNDEIGRQAILK------LMDAVDEYIPDPVRVLDKPFLMPIEDVFSIQGRGTVATGRIEQGVIKVGEEVEILGLREGGVPLKSTVTGVEMFKKILDNGQAGDNVGLLLRGLKREDIQRGMV 352          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: CYSN_YERE8 (Sulfate adenylyltransferase subunit 1 OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=cysN PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.782e-24
Identity = 62/203 (30.54%), Postives = 108/203 (53.20%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNV 611
            GH  + +NM TG S  D A+L+ID+  G  +       QTR H+ +A  LG++ ++   NKMD     Y ++ +++  ++  S+ +++  + D I FVP+S  +GDN+   S  ++WY GPTLLE L+ ++       +PLR P+Q V +         G +  G+++ G  +   PSG+ + V  +      L +A PG+ +
Sbjct:  119 GHEQYTRNMATGASTCDLAILLIDARKGVLD-------QTRRHSFIATLLGIRHLVVAVNKMDLVD--YQESVFEQFKQDYLSFAQQLPTDLD-IKFVPLSALDGDNVASPSEKMNWYSGPTLLEVLESVDVVNASRQQPLRFPVQYVNRPNLDFRGYAGTLSAGIVRVGQKIKVLPSGVESTVARIVTFDGDLTQAGPGEAI 311          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: CYSN_VIBVU (Sulfate adenylyltransferase subunit 1 OS=Vibrio vulnificus GN=cysN PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.782e-24
Identity = 68/200 (34.00%), Postives = 105/200 (52.50%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPG 602
            GH  + +NM TG S  D AV++ID+  G  +       QTR H+ ++  LG+K  +   NKMD    ++S+ R++EI  E  ++ K +    D I  +PIS  EGDN++E S  + WY+GPTLLE L+ ++  K       R P+Q V +         G + +GV+K G  +T  PSG ++ V  +      L +A  G
Sbjct:  115 GHEQYTRNMATGASTCDLAVILIDARKGVLD-------QTRRHSFISNLLGLKHFVVAVNKMDLV--EFSQQRFEEIKAEYQAFSKNLRGETD-IQIIPISALEGDNVVELSQQMAWYQGPTLLEILESVDVVKEKEAGEFRFPVQYVNRPNLDFRGFAGTISSGVVKVGDRITALPSGKSSTVARIVTFDGDLEQAQAG 304          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_THAPS (Elongation factor Tu, chloroplastic OS=Thalassiosira pseudonana GN=tufA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.328e-24
Identity = 82/245 (33.47%), Postives = 122/245 (49.80%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK----EVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPT--------LLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D           DE+++    EV   L    +  D IP  P S  +    +  S+N D  +G          L++A+D  I  P+R  +K   + ++DV+ I G GTV  GR+E GV+K G    IV  G +  TT +  +EM  ++L E   GDNVG   +  + ++++RG V S    I P
Sbjct:   84 GHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPHIVVFLNKQDQVDD-------DELLELVELEVRELLSTYDFPGDDIPICPGSALQAIEAL--SSNPDVKRGDNPWVDKIFALMDAVDAYIPTPERDVEKTFLMAIEDVFSITGRGTVATGRIERGVVKVGDNVEIVGVGDT-QTTTITGIEMFQKTLEEGFAGDNVGILLRGVTRENIERGMVLSKPGTITP 311          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_SYNJA (Elongation factor Tu OS=Synechococcus sp. (strain JA-3-3Ab) GN=tuf PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.328e-24
Identity = 76/240 (31.67%), Postives = 120/240 (50.00%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGP------TLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGL----TTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D       +   + +  E+   L K  +  D+IP +  S  +    ++ +      + P       L++A+D  I  P+R  DKP  + ++DV+ I G GTV  GR+E G +K G  V     GL    +T V  +EM  ++L E + GDNVG   +     +++RG V +  + I P
Sbjct:   84 GHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPSLVVFLNKVDMVD---DEELLELVELEIRELLSKYDFPGDEIPIIRGSALKALERMQANPKTQRGEDPWVDKIYELMDAVDSYIPTPERDVDKPFLMAVEDVFSITGRGTVATGRIERGRIKVGETVEL--VGLRETRSTTVTGLEMFQKTLDEGIAGDNVGVLLRGIQKNEVERGMVLAKPKTITP 311          
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EFTU_SOLUE (Elongation factor Tu OS=Solibacter usitatus (strain Ellin6076) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.328e-24
Identity = 82/236 (34.75%), Postives = 117/236 (49.58%), Query Frame = 3
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGF---EGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPP 689
            GH D+IKNMITG +Q D A++++ +T G          QTREH LLA  +GV  ++   NK+D           D +  EV   LK   +  D +P V +S      G+   E++ +        L+EA+D  I  P+R  DKP  +P++D++ I G GTV  GR+E G+ K G    IV F  +  T  V  VEM  + L E   GDNVG   +      ++RG V +    I P
Sbjct:   85 GHADYIKNMITGAAQMDGAIVVVAATDGPMP-------QTREHILLARQVGVPYIVVAMNKVDMVD---DSELLDLVELEVRELLKSYQFPGDDLPVVRVSALGALNGEPQWEKTVD-------ELMEAVDSYIPMPERAIDKPFIMPIEDIFSIQGRGTVVTGRIERGICKVGEEMEIVGFRDTRKTV-VTGVEMFKKLLDEGRAGDNVGLLLRGVEKDMVERGQVIAKPGSITP 302          
The following BLAST results are available for this feature:
BLAST of DC900092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_MYCA91.782e-2435.53Elongation factor Tu OS=Mycobacterium abscessus (s... [more]
EFTU_CHLAT1.782e-2433.75Elongation factor Tu, chloroplastic OS=Chlorokybus... [more]
EFTU_AZOC51.782e-2434.33Elongation factor Tu OS=Azorhizobium caulinodans (... [more]
EFTU_ACHLI1.782e-2433.48Elongation factor Tu OS=Acholeplasma laidlawii (st... [more]
EFTM_ARATH1.782e-2434.78Elongation factor Tu, mitochondrial OS=Arabidopsis... [more]
CYSN_YERE81.782e-2430.54Sulfate adenylyltransferase subunit 1 OS=Yersinia ... [more]
CYSN_VIBVU1.782e-2434.00Sulfate adenylyltransferase subunit 1 OS=Vibrio vu... [more]
EFTU_THAPS2.328e-2433.47Elongation factor Tu, chloroplastic OS=Thalassiosi... [more]
EFTU_SYNJA2.328e-2431.67Elongation factor Tu OS=Synechococcus sp. (strain ... [more]
EFTU_SOLUE2.328e-2434.75Elongation factor Tu OS=Solibacter usitatus (strai... [more]

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Properties
Property NameValue
Genbank descriptionDC900092 VSS Citrus sinensis cDNA clone VS27V08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900092 ID=DC900092; Name=DC900092; organism=Citrus sinensis; type=EST; length=707bp
CTGGACATCGTGACTTTATTAAGAACATGATTACTGGTACTTCTCAGGCT
GATTGTGCTGTCCTTATCATCGACTCCACCACTGGTGGTTTTGAAGCTGG
TATCTCTAAGGATGGGCAGACCAGAGAGCACGCTCTACTTGCTTTCACCC
TTGGTGTGAAGCAAATGATTTGTTGCTGTAACAAGATGGATGCCACCACT
CCCAAGTATTCAAAGGCAAGATATGATGAAATTGTTAAGGAAGTCTCTTC
CTACTTGAAGAAGGTTGGCTACAACCCAGATAAGATTCCATTTGTCCCAA
TCTCTGGATTTGAGGGTGATAACATGATTGAGAGGTCCACAAACCTTGAC
TGGTACAAGGGCCCAACCCTTCTTGAAGCTCTTGACCAGATCAATGAACC
CAAGAGACCAACAGACAAGCCTCTCCGTCTCCCCCTTCAGGATGTCTACA
AGATTGGTGGTATTGGAACTGTCCCTGTTGGCCGTGTTGAAACTGGTGTA
CTCAAGCCCGGTATGATAGTCACATTCGGTCCATCTGGATTGACTACTGA
AGTTAAGTCAGTTGAGATGCACCATGAGTCTCTCCTGGAGGCACTTCCTG
GTGATAATGTGGGGTTCAACGNTAAGAATGNTTCAGTGAAGGATCTTAAG
CGTGGGTACGTTGCATCTAACTCCAGGATGATCCCGCCAGGGGGCATCCA
CTTCACC
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