DC900092

Overview
NameDC900092
Unique NameDC900092
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2880 contig Csv1_Contig2880:368..1074. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EF1A_HELVI (Elongation factor 1-alpha (Fragment) OS=Heliothis virescens PE=3 SV=1)

HSP 1 Score: 343.584 bits (880), Expect = 6.208e-94
Identity = 171/243 (70.37%), Postives = 197/243 (81.07%), Query Frame = 3 
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYK------------GPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPPGG 695
            GHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I   NKMD+T P YS++R++EI KEVSSY+KK+GYNP  + FVPISG+ GDNM+E ST + W+K            G  L+EALD I  P RPTDK LRLPLQDVYKIGGIGTVPVGRVETG+LKPG IV F P+ +TTEVKSVEMHHE+L EA+PGDNVGFN KN SVK+L+RGYVA +S+  PP G
Sbjct:   80 GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEASTKMPWFKGWNVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKG 322
[Close]
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EF1A_HELGL (Elongation factor 1-alpha (Fragment) OS=Helicoverpa gelotopoeon PE=3 SV=1)

HSP 1 Score: 343.584 bits (880), Expect = 6.208e-94
Identity = 171/243 (70.37%), Postives = 197/243 (81.07%), Query Frame = 3 
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYK------------GPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPPGG 695
            GHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I   NKMD+T P YS++R++EI KEVSSY+KK+GYNP  + FVPISG+ GDNM+E ST + W+K            G  L+EALD I  P RPTDK LRLPLQDVYKIGGIGTVPVGRVETG+LKPG IV F P+ +TTEVKSVEMHHE+L EA+PGDNVGFN KN SVK+L+RGYVA +S+  PP G
Sbjct:   80 GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEASTKMPWFKGWNVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKG 322
[Close]
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EF1A_HELDI (Elongation factor 1-alpha (Fragment) OS=Heliocheilus discalis PE=3 SV=1)

HSP 1 Score: 343.584 bits (880), Expect = 6.208e-94
Identity = 171/243 (70.37%), Postives = 197/243 (81.07%), Query Frame = 3 
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYK------------GPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPPGG 695
            GHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I   NKMD+T P YS++R++EI KEVSSY+KK+GYNP  + FVPISG+ GDNM+E ST + W+K            G  L+EALD I  P RPTDK LRLPLQDVYKIGGIGTVPVGRVETG+LKPG IV F P+ +TTEVKSVEMHHE+L EA+PGDNVGFN KN SVK+L+RGYVA +S+  PP G
Sbjct:   80 GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEASTKMPWFKGWNVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKG 322
[Close]
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EF1A_HELAM (Elongation factor 1-alpha (Fragment) OS=Helicoverpa armigera PE=3 SV=1)

HSP 1 Score: 343.584 bits (880), Expect = 6.208e-94
Identity = 171/243 (70.37%), Postives = 197/243 (81.07%), Query Frame = 3 
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYK------------GPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPPGG 695
            GHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I   NKMD+T P YS++R++EI KEVSSY+KK+GYNP  + FVPISG+ GDNM+E ST + W+K            G  L+EALD I  P RPTDK LRLPLQDVYKIGGIGTVPVGRVETG+LKPG IV F P+ +TTEVKSVEMHHE+L EA+PGDNVGFN KN SVK+L+RGYVA +S+  PP G
Sbjct:   80 GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEASTKMPWFKGWNVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKG 322
[Close]
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EF1A_HELAL (Elongation factor 1-alpha (Fragment) OS=Heliocheilus albipunctella PE=3 SV=1)

HSP 1 Score: 343.584 bits (880), Expect = 6.208e-94
Identity = 171/243 (70.37%), Postives = 197/243 (81.07%), Query Frame = 3 
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYK------------GPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPPGG 695
            GHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I   NKMD+T P YS++R++EI KEVSSY+KK+GYNP  + FVPISG+ GDNM+E ST + W+K            G  L+EALD I  P RPTDK LRLPLQDVYKIGGIGTVPVGRVETG+LKPG IV F P+ +TTEVKSVEMHHE+L EA+PGDNVGFN KN SVK+L+RGYVA +S+  PP G
Sbjct:   80 GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEASTKMPWFKGWNVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKG 322
[Close]
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EF1A_ANIIF (Elongation factor 1-alpha (Fragment) OS=Anicla infecta PE=3 SV=1)

HSP 1 Score: 343.584 bits (880), Expect = 6.208e-94
Identity = 171/243 (70.37%), Postives = 197/243 (81.07%), Query Frame = 3 
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYK------------GPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPPGG 695
            GHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I   NKMD+T P YS++R++EI KEVSSY+KK+GYNP  + FVPISG+ GDNM+E ST + W+K            G  L+EALD I  P RPTDK LRLPLQDVYKIGGIGTVPVGRVETG+LKPG IV F P+ +TTEVKSVEMHHE+L EA+PGDNVGFN KN SVK+L+RGYVA +S+  PP G
Sbjct:   80 GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEASTKMPWFKGWNVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKG 322
[Close]
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EF1A_ADIBE (Elongation factor 1-alpha (Fragment) OS=Adisura bella PE=3 SV=1)

HSP 1 Score: 343.584 bits (880), Expect = 6.208e-94
Identity = 171/243 (70.37%), Postives = 197/243 (81.07%), Query Frame = 3 
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYK------------GPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPPGG 695
            GHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I   NKMD+T P YS++R++EI KEVSSY+KK+GYNP  + FVPISG+ GDNM+E ST + W+K            G  L+EALD I  P RPTDK LRLPLQDVYKIGGIGTVPVGRVETG+LKPG IV F P+ +TTEVKSVEMHHE+L EA+PGDNVGFN KN SVK+L+RGYVA +S+  PP G
Sbjct:   80 GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEASTKMPWFKGWNVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKG 322
[Close]
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EF1A_ARTSA (Elongation factor 1-alpha OS=Artemia salina PE=1 SV=2)

HSP 1 Score: 343.199 bits (879), Expect = 8.108e-94
Identity = 171/243 (70.37%), Postives = 198/243 (81.48%), Query Frame = 3 
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYK------------GPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPPGG 695
            GHRDFIKNMITGTSQADCAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P +S+AR++EI KEVS+Y+KK+GYNP  + FVPISG+ GDNM+E S  L WYK            G TLL+ALD I  P RPT+KPLRLPLQDVYKIGGIGTVPVGRVETG++KPGMIVTF P+ +TTEVKSVEMHHESL +A PGDNVGFN KN SVK+L+RGYVAS+S+  P  G
Sbjct:   94 GHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPFSEARFEEIKKEVSAYIKKIGYNPAAVAFVPISGWHGDNMLEASDRLPWYKGWNIERKEGKADGKTLLDALDAILPPSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMIVTFAPANITTEVKSVEMHHESLEQASPGDNVGFNVKNVSVKELRRGYVASDSKNNPARG 336
[Close]
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EF1A_ARXAD (Elongation factor 1-alpha OS=Arxula adeninivorans GN=TEF PE=3 SV=1)

HSP 1 Score: 342.428 bits (877), Expect = 1.383e-93
Identity = 170/243 (69.96%), Postives = 197/243 (81.07%), Query Frame = 3 
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKG------------PTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPPGG 695
            GHRDFIKNMITGTSQADCA+LII   TG FEAGISKDGQTREHALLAFTLGV+Q+I   NKMD+    +S+ RY+EIVKE S+++KKVG+NP  +PFVPISG+ GDNMIE +TN  WYKG             TLLEA+D ++ P RP+DKPLRLPLQDVYKIGGIGTVPVGRVETGV+KPGM+VTF P+G+TTEVKSVEMHHE L E LPGDNVGFN KN SVK+++RG VA +S+  PP G
Sbjct:   94 GHRDFIKNMITGTSQADCAILIIAGGTGEFEAGISKDGQTREHALLAFTLGVRQLIVAINKMDSVN--WSEDRYNEIVKETSNFIKKVGFNPKAVPFVPISGWNGDNMIEATTNASWYKGWHKETKEGKATGKTLLEAIDAVDPPTRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMHHEQLPEGLPGDNVGFNVKNVSVKEIRRGNVAGDSKNDPPKG 334
[Close]
BLAST of DC900092 vs. ExPASy Swiss-Prot
Match: EF1A_TRIRE (Elongation factor 1-alpha OS=Trichoderma reesei GN=tef1 PE=3 SV=1)

HSP 1 Score: 342.043 bits (876), Expect = 1.806e-93
Identity = 171/243 (70.37%), Postives = 194/243 (79.84%), Query Frame = 3 
Query:    3 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKG------------PTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNXKNXSVKDLKRGYVASNSRMIPPGG 695
            GHRDFIKNMITGTSQADCA+LII + TG FEAGISKDGQTREHALLA+TLGVKQ+I   NKMD  T  +++ARY EI+KE S+++KKVG+NP  + FVPISGF GDNM+  STN  WYKG             TLLEA+D I  PKRPTDKPLRLPLQDVYKIGGIGTVPVGR+ETGVLKPGM+VTF PS +TTEVKSVEMHHE L E  PGDNVGFN KN SVK+++RG VA +S+  PP G
Sbjct:   95 GHRDFIKNMITGTSQADCAILIIAAGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAINKMD--TANWAEARYQEIIKETSNFIKKVGFNPKAVAFVPISGFNGDNMLTPSTNCPWYKGWEKETKAGKFTGKTLLEAIDSIEPPKRPTDKPLRLPLQDVYKIGGIGTVPVGRIETGVLKPGMVVTFAPSNVTTEVKSVEMHHEQLAEGQPGDNVGFNVKNVSVKEIRRGNVAGDSKNDPPMG 335
The following BLAST results are available for this feature:
BLAST of DC900092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_HELVI6.208e-9470.37Elongation factor 1-alpha (Fragment) OS=Heliothis ... [more]
EF1A_HELGL6.208e-9470.37Elongation factor 1-alpha (Fragment) OS=Helicoverp... [more]
EF1A_HELDI6.208e-9470.37Elongation factor 1-alpha (Fragment) OS=Heliocheil... [more]
EF1A_HELAM6.208e-9470.37Elongation factor 1-alpha (Fragment) OS=Helicoverp... [more]
EF1A_HELAL6.208e-9470.37Elongation factor 1-alpha (Fragment) OS=Heliocheil... [more]
EF1A_ANIIF6.208e-9470.37Elongation factor 1-alpha (Fragment) OS=Anicla inf... [more]
EF1A_ADIBE6.208e-9470.37Elongation factor 1-alpha (Fragment) OS=Adisura be... [more]
EF1A_ARTSA8.108e-9470.37Elongation factor 1-alpha OS=Artemia salina PE=1 S... [more]
EF1A_ARXAD1.383e-9369.96Elongation factor 1-alpha OS=Arxula adeninivorans ... [more]
EF1A_TRIRE1.806e-9370.37Elongation factor 1-alpha OS=Trichoderma reesei GN... [more]

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Properties
Property NameValue
Genbank descriptionDC900092 VSS Citrus sinensis cDNA clone VS27V08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900092 ID=DC900092; Name=DC900092; organism=Citrus sinensis; type=EST; length=707bp
CTGGACATCGTGACTTTATTAAGAACATGATTACTGGTACTTCTCAGGCT
GATTGTGCTGTCCTTATCATCGACTCCACCACTGGTGGTTTTGAAGCTGG
TATCTCTAAGGATGGGCAGACCAGAGAGCACGCTCTACTTGCTTTCACCC
TTGGTGTGAAGCAAATGATTTGTTGCTGTAACAAGATGGATGCCACCACT
CCCAAGTATTCAAAGGCAAGATATGATGAAATTGTTAAGGAAGTCTCTTC
CTACTTGAAGAAGGTTGGCTACAACCCAGATAAGATTCCATTTGTCCCAA
TCTCTGGATTTGAGGGTGATAACATGATTGAGAGGTCCACAAACCTTGAC
TGGTACAAGGGCCCAACCCTTCTTGAAGCTCTTGACCAGATCAATGAACC
CAAGAGACCAACAGACAAGCCTCTCCGTCTCCCCCTTCAGGATGTCTACA
AGATTGGTGGTATTGGAACTGTCCCTGTTGGCCGTGTTGAAACTGGTGTA
CTCAAGCCCGGTATGATAGTCACATTCGGTCCATCTGGATTGACTACTGA
AGTTAAGTCAGTTGAGATGCACCATGAGTCTCTCCTGGAGGCACTTCCTG
GTGATAATGTGGGGTTCAACGNTAAGAATGNTTCAGTGAAGGATCTTAAG
CGTGGGTACGTTGCATCTAACTCCAGGATGATCCCGCCAGGGGGCATCCA
CTTCACC
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