DC900091 | Citrus Genome Database

Overview


Name	DC900091
Unique Name	DC900091
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	1042

Libraries


Library Name	Type
VSS	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig4107	contig	Csv1_Contig4107:287..1325.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of DC900091 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.860e-33
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 1

Query:  226 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 453
            MQIFVKTLTGKTI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 142.51 bits (358), Expect = 3.860e-33
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 2

Query:  683 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 910
            MQIFVKTLTGKTI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 131.724 bits (330), Expect = 6.814e-30
Identity = 65/71 (91.55%), Postives = 69/71 (97.18%), Query Frame = 1

Query:   13 ETLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 225
            +TLTGKTI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 4 Score: 100.138 bits (248), Expect = 2.054e-28
Identity = 49/54 (90.74%), Postives = 52/54 (96.30%), Query Frame = 1

Query:  454 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGK 615
            MQIFVKTLTGKTI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+G+
Sbjct:    1 MQIFVKTLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGR 54

HSP 5 Score: 47.7506 bits (112), Expect = 2.054e-28
Identity = 22/23 (95.65%), Postives = 23/23 (100.00%), Query Frame = 2

Query:  614 RTLADYNIQKESTLHLVLRLRGG 682
            RTL+DYNIQKESTLHLVLRLRGG
Sbjct:   54 RTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DC900091 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.242e-31
Identity = 69/76 (90.79%), Postives = 72/76 (94.74%), Query Frame = 1

Query:  226 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 453
            MQIFVKTLTG TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFA KQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 137.502 bits (345), Expect = 1.242e-31
Identity = 69/76 (90.79%), Postives = 72/76 (94.74%), Query Frame = 2

Query:  683 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 910
            MQIFVKTLTG TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFA KQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 126.716 bits (317), Expect = 2.192e-28
Identity = 63/71 (88.73%), Postives = 67/71 (94.37%), Query Frame = 1

Query:   13 ETLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 225
            +TLTG TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFA KQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 4 Score: 95.1301 bits (235), Expect = 6.349e-27
Identity = 47/54 (87.04%), Postives = 50/54 (92.59%), Query Frame = 1

Query:  454 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGK 615
            MQIFVKTLTG TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFA KQLE+G+
Sbjct:    1 MQIFVKTLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGR 54

HSP 5 Score: 47.7506 bits (112), Expect = 6.349e-27
Identity = 22/23 (95.65%), Postives = 23/23 (100.00%), Query Frame = 2

Query:  614 RTLADYNIQKESTLHLVLRLRGG 682
            RTL+DYNIQKESTLHLVLRLRGG
Sbjct:   54 RTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of DC900091 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 6.377e-28
Identity = 61/76 (80.26%), Postives = 67/76 (88.16%), Query Frame = 1

Query:  226 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 453
            MQIFVKTLTGKTIT+E E  DT+  VK KI DKEG+P DQQRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG
Sbjct:    1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76

HSP 2 Score: 125.176 bits (313), Expect = 6.377e-28
Identity = 61/76 (80.26%), Postives = 67/76 (88.16%), Query Frame = 2

Query:  683 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 910
            MQIFVKTLTGKTIT+E E  DT+  VK KI DKEG+P DQQRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG
Sbjct:    1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76

HSP 3 Score: 114.39 bits (285), Expect = 1.126e-24
Identity = 55/71 (77.46%), Postives = 62/71 (87.32%), Query Frame = 1

Query:   13 ETLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 225
            +TLTGKTIT+E E  DT+  VK KI DKEG+P DQQRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG
Sbjct:    6 KTLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76

HSP 4 Score: 83.5741 bits (205), Expect = 3.818e-23
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 1

Query:  454 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGK 615
            MQIFVKTLTGKTIT+E E  DT+  VK KI DKEG+P DQQRLI+AGKQLED +
Sbjct:    1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQ 54

HSP 5 Score: 46.595 bits (109), Expect = 3.818e-23
Identity = 21/23 (91.30%), Postives = 23/23 (100.00%), Query Frame = 2

Query:  614 RTLADYNIQKESTLHLVLRLRGG 682
            +TLADYNIQKESTLH+VLRLRGG
Sbjct:   54 QTLADYNIQKESTLHMVLRLRGG 76

[Close]

BLAST of DC900091 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 4.134e-27
Identity = 58/76 (76.32%), Postives = 68/76 (89.47%), Query Frame = 1

Query:  226 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 453
            MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG
Sbjct:    1 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76

HSP 2 Score: 122.479 bits (306), Expect = 4.134e-27
Identity = 58/76 (76.32%), Postives = 68/76 (89.47%), Query Frame = 2

Query:  683 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 910
            MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG
Sbjct:    1 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76

HSP 3 Score: 112.079 bits (279), Expect = 5.587e-24
Identity = 53/71 (74.65%), Postives = 63/71 (88.73%), Query Frame = 1

Query:   13 ETLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 225
            +TLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG
Sbjct:    6 KTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76

HSP 4 Score: 82.8037 bits (203), Expect = 6.466e-23
Identity = 39/54 (72.22%), Postives = 46/54 (85.19%), Query Frame = 1

Query:  454 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGK 615
            MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED K
Sbjct:    1 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSK 54

HSP 5 Score: 46.595 bits (109), Expect = 6.466e-23
Identity = 21/27 (77.78%), Postives = 24/27 (88.89%), Query Frame = 2

Query:  602 LRMERTLADYNIQKESTLHLVLRLRGG 682
            L   +T+ADYNIQKESTLH+VLRLRGG
Sbjct:   50 LEDSKTMADYNIQKESTLHMVLRLRGG 76

[Close]

BLAST of DC900091 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 1.571e-26
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 1

Query:   31 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 219
            TITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63

HSP 2 Score: 120.553 bits (301), Expect = 1.571e-26
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 1

Query:  259 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 447
            TITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63

HSP 3 Score: 120.553 bits (301), Expect = 1.571e-26
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 2

Query:  716 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 904
            TITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63

HSP 4 Score: 82.8037 bits (203), Expect = 6.923e-22
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 1

Query:  487 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGK 615
            TITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDG+
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGR 43

HSP 5 Score: 43.1282 bits (100), Expect = 6.923e-22
Identity = 20/21 (95.24%), Postives = 21/21 (100.00%), Query Frame = 2

Query:  614 RTLADYNIQKESTLHLVLRLR 676
            RTL+DYNIQKESTLHLVLRLR
Sbjct:   43 RTLSDYNIQKESTLHLVLRLR 63

[Close]

BLAST of DC900091 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.869e-20
Identity = 47/75 (62.67%), Postives = 60/75 (80.00%), Query Frame = 2

Query:  689 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 913
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG+
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGGQ 77

HSP 2 Score: 98.9821 bits (245), Expect = 4.894e-20
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 1

Query:  232 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 453
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

HSP 3 Score: 95.5153 bits (236), Expect = 5.411e-19
Identity = 44/71 (61.97%), Postives = 57/71 (80.28%), Query Frame = 1

Query:   13 ETLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 225
            +TLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    6 KTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

HSP 4 Score: 72.4034 bits (176), Expect = 4.906e-12
Identity = 33/52 (63.46%), Postives = 43/52 (82.69%), Query Frame = 1

Query:  460 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGK 615
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D K
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDK 54

[Close]

BLAST of DC900091 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.747e-20
Identity = 48/74 (64.86%), Postives = 59/74 (79.73%), Query Frame = 1

Query:  232 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 453
            I VKTLTGK I +++E +DTID VK ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

HSP 2 Score: 99.3673 bits (246), Expect = 3.747e-20
Identity = 48/74 (64.86%), Postives = 59/74 (79.73%), Query Frame = 2

Query:  689 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 910
            I VKTLTGK I +++E +DTID VK ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

HSP 3 Score: 95.9005 bits (237), Expect = 4.143e-19
Identity = 45/71 (63.38%), Postives = 57/71 (80.28%), Query Frame = 1

Query:   13 ETLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 225
            +TLTGK I +++E +DTID VK ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    6 KTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

HSP 4 Score: 72.7886 bits (177), Expect = 3.756e-12
Identity = 34/52 (65.38%), Postives = 43/52 (82.69%), Query Frame = 1

Query:  460 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGK 615
            I VKTLTGK I +++E +DTID VK ++++KEGIPP QQRLI+AGKQL D K
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDK 54

[Close]

BLAST of DC900091 vs. ExPASy Swiss-Prot
Match: NEDD8_DROME (NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.747e-20
Identity = 45/77 (58.44%), Postives = 60/77 (77.92%), Query Frame = 2

Query:  683 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGE 913
            M I VKTLTGK I +++E +D +D +K ++++KEGIPP QQRLIF+GKQ+ D +T ADY +Q  S LHLVL LRGG+
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGGSVLHLVLALRGGD 77

HSP 2 Score: 98.9821 bits (245), Expect = 4.894e-20
Identity = 46/79 (58.23%), Postives = 60/79 (75.95%), Query Frame = 1

Query:  226 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 462
            M I VKTLTGK I +++E +D +D +K ++++KEGIPP QQRLIF+GKQ+ D +T ADY +Q  S LHLVL LRGG  I
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGGSVLHLVLALRGGDSI 79

HSP 3 Score: 94.3597 bits (233), Expect = 1.206e-18
Identity = 42/74 (56.76%), Postives = 57/74 (77.03%), Query Frame = 1

Query:   13 ETLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 234
            +TLTGK I +++E +D +D +K ++++KEGIPP QQRLIF+GKQ+ D +T ADY +Q  S LHLVL LRGG  I
Sbjct:    6 KTLTGKEIEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGGSVLHLVLALRGGDSI 79

HSP 4 Score: 71.633 bits (174), Expect = 4.622e-16
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 1

Query:  454 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGK 615
            M I VKTLTGK I +++E +D +D +K ++++KEGIPP QQRLIF+GKQ+ D K
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDK 54

HSP 5 Score: 34.6538 bits (78), Expect = 4.622e-16
Identity = 16/27 (59.26%), Postives = 19/27 (70.37%), Query Frame = 2

Query:  611 ERTLADYNIQKESTLHLVLRLRGGMQI 691
            ++T ADY +Q  S LHLVL LRGG  I
Sbjct:   53 DKTAADYKVQGGSVLHLVLALRGGDSI 79

[Close]

BLAST of DC900091 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.894e-20
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 1

Query:  232 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 453
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

HSP 2 Score: 98.9821 bits (245), Expect = 4.894e-20
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 2

Query:  689 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 910
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

HSP 3 Score: 95.5153 bits (236), Expect = 5.411e-19
Identity = 44/71 (61.97%), Postives = 57/71 (80.28%), Query Frame = 1

Query:   13 ETLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 225
            +TLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    6 KTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

HSP 4 Score: 72.4034 bits (176), Expect = 4.906e-12
Identity = 33/52 (63.46%), Postives = 43/52 (82.69%), Query Frame = 1

Query:  460 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGK 615
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D K
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDK 54

[Close]

BLAST of DC900091 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 4.894e-20
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 1

Query:  232 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 453
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

HSP 2 Score: 98.9821 bits (245), Expect = 4.894e-20
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 2

Query:  689 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 910
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

HSP 3 Score: 95.5153 bits (236), Expect = 5.411e-19
Identity = 44/71 (61.97%), Postives = 57/71 (80.28%), Query Frame = 1

Query:   13 ETLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 225
            +TLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    6 KTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

HSP 4 Score: 72.4034 bits (176), Expect = 4.906e-12
Identity = 33/52 (63.46%), Postives = 43/52 (82.69%), Query Frame = 1

Query:  460 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGK 615
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D K
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDK 54

The following BLAST results are available for this feature:

BLAST of DC900091 vs. ExPASy Swiss-Prot

BLAST of DC900091 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98


Match Name	E-value	Identity	Description
UBIQ_LEIMA	3.860e-33	93.42	Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1	[more]
UBIQ_LEITA	1.242e-31	90.79	Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3...	[more]
UBIL_NPVOP	6.377e-28	80.26	Ubiquitin-like protein OS=Orgyia pseudotsugata mul...	[more]
UBIL_NPVAC	4.134e-27	76.32	Ubiquitin-like protein OS=Autographa californica n...	[more]
UBIQ_LUMTE	1.571e-26	95.24	Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ...	[more]
RUB2_ORYSJ	2.869e-20	62.67	NEDD8-like protein RUB2 OS=Oryza sativa subsp. jap...	[more]
RUB1_DESAN	3.747e-20	64.86	NEDD8-like protein RUB1 OS=Deschampsia antarctica ...	[more]
NEDD8_DROME	3.747e-20	58.44	NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=...	[more]
RUB1_ORYSJ	4.894e-20	63.51	NEDD8-like protein RUB1 OS=Oryza sativa subsp. jap...	[more]
RUB1_ARATH	4.894e-20	63.51	NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN...	[more]

Pages

Properties


Property Name	Value
Genbank description	DC900091 VSS Citrus sinensis cDNA clone VS27V07 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DC900091 ID=DC900091; Name=DC900091; organism=Citrus sinensis; type=EST; length=1042bp
AATTCGGCACGAGAAACCCTAACCGGGAAGACGATAACCCTCGAGGTTGA
GAGCTCAGACACGATCGATAACGTTAAGGCGAAGATTCAAGACAAGGAGG
GAATCCCCCCGGACCAGCAGAGGCTGATCTTTGCTGGCAAGCAACTGGAA
GACGGCCGCACCTTGGCTGATTACAATATCCAGAAGGAGTCAACCCTTCA
TCTCGTCCTCAGGCTCCGTGGTGGTATGCAGATCTTCGTCAAAACCCTAA
CTGGGAAGACGATCACTCTGGAGGTGGAGAGTTCGGATACGATTGATAAC
GTCAAGGCCAAGATCCAGGACAAAGAGGGGATACCGCCGGACCAGCAAAG
ATTGATCTTCGCCGGTAAGCAGTTGGAAGATGGCCGCACCTTGGCCGATT
ACAACATTCAGAAAGAGTCAACTCTCCACCTTGTTCTTCGTCTCAGGGGA
GGCATGCAGATATTTGTTAAGACCCTTACTGGGAAAACAATTACTTTGGA
AGTTGAGAGCTCAGACACAATTGACAATGTCAAGGCAAAAATCCAAGACA
AGGAAGGAATTCCACCGGATCAGCAGCGTTTGATCTTCGCTGGCAAACAG
CTTGAGGATGGAAAGGACTCTTGCGGATTATAACATCCAGAAGGAGTCGA
CCCTTCATCTGGTTCTGCGCCTGAGGGGTGGTATGCAGATATTTGTCAAG
ACCTTGACTGGGAAGACTATTACTCTGGAGGTGGAGAGCTCAGATACTAT
TGATAATGTTAAGGCAAAGATTCAGGACAAGGAAGGGATTCCACCAGATC
AGCAGAGGCTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGTACTTTA
GCTGATTATAACATTCAGAAGGAGTCCACCCTCCATCTTGTGCTCCGCCT
TCGTGGTGGTGAATTCTAAGAATGTTATCTGCTTGCCGCCGTGTCTGTTC
TGCTCTGCTGTAGCAGTAATATTTATTTTTCATTTGCTAGTCCTGCTTCT
GTTTCAGTCTTTTTGTCACATCAAGTTTTATGTGGAAATGAA