CN185921

Overview
NameCN185921
Unique NameCN185921
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length676
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185921_ssr81 microsatellite CN185921_ssr81:81..90. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1656 contig Csv1_Contig1656:22..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185921 vs. ExPASy Swiss-Prot
Match: IPL1_DEBHA (Spindle assembly checkpoint kinase OS=Debaryomyces hansenii GN=IPL1 PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 6.434e-21
Identity = 47/149 (31.54%), Postives = 83/149 (55.70%), Query Frame = 2
Query:  197 YELGRTLGEGSFAKVKFAKNVETGDFVAIKIVDRDQVLRHKMVEQIKREISTMKLIKHPNVIKIIEVMASKTKIYIVLEFIDGGELFDKIAKHGRLKEDEARRYFQQLINAVDYCHSRGVFHRDLKPENLLLDSYGVLKISDFGLSAIS 643
            +E+G+ LG+G   KV   K+  +G   A+K++ +  ++  K+ +  +REI     + HP + ++         +Y++LE+   GEL+  +    R  +  A  Y  Q+  A+DY H++ + HRD+KPEN+LL +   +K+SDFG S  S
Sbjct:  148 FEIGKVLGKGKLGKVYCVKHKTSGYIAALKVMAKKDLIDLKLEKNFRREIEIQSNLIHPKISRLYGFFYDHKNVYLILEYSIHGELYHHLKVQRRFNDATASHYIYQVALALDYLHTKHIIHRDIKPENILLSTDNCIKLSDFGWSVKS 296          
BLAST of CN185921 vs. ExPASy Swiss-Prot
Match: CDPK6_ARATH (Calcium-dependent protein kinase 6 OS=Arabidopsis thaliana GN=CPK6 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.434e-21
Identity = 58/150 (38.67%), Postives = 80/150 (53.33%), Query Frame = 2
Query:  197 YELGRTLGEGSFAKVKFAKNVETGDFVAIKIVDRDQVLRHKMVEQIKREISTMK-LIKHPNVIKIIEVMASKTKIYIVLEFIDGGELFDKIAKHGRLKEDEARRYFQQLINAVDYCHSRGVFHRDLKPENLLL---DSYGVLKISDFGLS 634
            Y L R LG+G F       ++ TG   A K + + +++  + VE ++REI  M  L  H N++ I         ++IV+E   GGELFD+I   G   E +A    + ++  V+ CHS GV HRDLKPEN LL   D    LK  DFGLS
Sbjct:   85 YTLSRKLGQGQFGTTYLCTDIATGVDYACKSISKRKLISKEDVEDVRREIQIMHHLAGHKNIVTIKGAYEDPLYVHIVMELCAGGELFDRIIHRGHYSERKAAELTKIIVGVVEACHSLGVMHRDLKPENFLLVNKDDDFSLKAIDFGLS 234          
BLAST of CN185921 vs. ExPASy Swiss-Prot
Match: CDKL3_RAT (Cyclin-dependent kinase-like 3 OS=Rattus norvegicus GN=Cdkl3 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 6.434e-21
Identity = 59/149 (39.60%), Postives = 87/149 (58.39%), Query Frame = 2
Query:  197 YELGRTLGEGSFAKVKFAKNVETGDFVAIKIVDRDQVLRHKMVEQIK-REISTMKLIKHPNVIKIIEVMASKTKIYIVLEFIDGGELFDKIAK--HGRLKEDEARRYFQQLINAVDYCHSRGVFHRDLKPENLLLDSYGVLKISDFGLS 634
            YE    +GEGS+  V   K+ +TG  VAIKI         K V +I  REI  +K  +H N++ +IEV   K KI++V EFID   L D++    HG L+    R+Y  Q++ A++Y H+  + HRD+KPEN+L+   G+ K+ DFG +
Sbjct:    4 YETLGKVGEGSYGTVMKCKHKDTGRIVAIKIFYEKP---EKSVNKIATREIKFLKQFRHENLVNLIEVFRQKKKIHLVFEFIDHTVL-DELQHYCHG-LESKRLRKYLFQILRAIEYLHNNNIIHRDIKPENILVSQSGITKLCDFGFA 147          
BLAST of CN185921 vs. ExPASy Swiss-Prot
Match: CDKL3_MOUSE (Cyclin-dependent kinase-like 3 OS=Mus musculus GN=Cdkl3 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 6.434e-21
Identity = 59/149 (39.60%), Postives = 87/149 (58.39%), Query Frame = 2
Query:  197 YELGRTLGEGSFAKVKFAKNVETGDFVAIKIVDRDQVLRHKMVEQIK-REISTMKLIKHPNVIKIIEVMASKTKIYIVLEFIDGGELFDKIAK--HGRLKEDEARRYFQQLINAVDYCHSRGVFHRDLKPENLLLDSYGVLKISDFGLS 634
            YE    +GEGS+  V   K+ +TG  VAIKI         K V +I  REI  +K  +H N++ +IEV   K KI++V EFID   L D++    HG L+    R+Y  Q++ A++Y H+  + HRD+KPEN+L+   G+ K+ DFG +
Sbjct:    4 YETLGKVGEGSYGTVMKCKHKDTGRIVAIKIFYEKP---EKSVNKIATREIKFLKQFRHENLVNLIEVFRQKKKIHLVFEFIDHTVL-DELQHYCHG-LESKRLRKYLFQILRAIEYLHNNNIIHRDIKPENILVSQSGITKLCDFGFA 147          
BLAST of CN185921 vs. ExPASy Swiss-Prot
Match: CDK5_DICDI (Cell division protein kinase 5 homolog OS=Dictyostelium discoideum GN=cdk5 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 6.434e-21
Identity = 56/149 (37.58%), Postives = 89/149 (59.73%), Query Frame = 2
Query:  194 KYELGRTLGEGSFAKVKFAKNVETGDFVAIKIVDRDQVLRHKMVEQIKREISTMKLIKHPNVIKIIEVMASKTKIYIVLEFIDGG--ELFDKIAKHGRLKEDEARRYFQQLINAVDYCHSRGVFHRDLKPENLLLDSYGVLKISDFGLS 634
            KY     LGEG++  V  AKN ETG+ VA+K +  D          I REIS +K +KHPN++++ +V+ ++ K+ +V E++D    +  D+    G + +   + +  QL+  V +CH   V HRDLKP+NLL++  G LK++DFGL+
Sbjct:    3 KYSKIEKLGEGTYGIVYKAKNRETGEIVALKRIRLDSEDEGVPCTAI-REISLLKELKHPNIVRLHDVIHTERKLTLVFEYLDQDLKKYLDECG--GEISKPTIKSFMYQLLKGVAFCHDHRVLHRDLKPQNLLINRKGELKLADFGLA 148          
BLAST of CN185921 vs. ExPASy Swiss-Prot
Match: AKT2_RAT (RAC-beta serine/threonine-protein kinase OS=Rattus norvegicus GN=Akt2 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.434e-21
Identity = 50/166 (30.12%), Postives = 97/166 (58.43%), Query Frame = 2
Query:  137 TAEVEKMSVKVPASRTRVGKYELGRTLGEGSFAKVKFAKNVETGDFVAIKIVDRDQVLRHKMVEQIKREISTMKLIKHPNVIKIIEVMASKTKIYIVLEFIDGGELFDKIAKHGRLKEDEARRYFQQLINAVDYCHSRGVFHRDLKPENLLLDSYGVLKISDFGLS 634
            T+E+ +++V    ++  +  ++  + LG+G+F KV   +   TG + A+KI+ ++ ++    V     E   ++  +HP +  +     +  ++  V+E+ +GG+LF  +++     ED AR Y  ++++A++Y HS  V +RD+K ENL+LD  G +KI+DFGLS
Sbjct:  132 TSEMMEVAVSKARAKVTMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGDLFFHLSRERVFTEDRARFYGAEIVSALEYLHSTDVVYRDIKLENLMLDKDGHIKITDFGLS 297          
BLAST of CN185921 vs. ExPASy Swiss-Prot
Match: SSK2_YEAST (MAP kinase kinase kinase SSK2 OS=Saccharomyces cerevisiae GN=SSK2 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.403e-21
Identity = 53/162 (32.72%), Postives = 97/162 (59.88%), Query Frame = 2
Query:  152 KMSVKVPASRTRVG-KYELGRTLGEGSFAKVKFAKNVETGDFVAIKIVD-RDQVLRHKMVEQIKREISTMKLIKHPNVIKIIEVMASKTKIYIVLEFIDGGELFDKIAKHGRLKEDEARR-YFQQLINAVDYCHSRGVFHRDLKPENLLLDSYGVLKISDFG 628
            K  V + +S + V  +++    +G G+F +V  A +++ G+ +A+K ++ +D     K+   IK E+S ++++ HPN++    V   + K+ I +E+ +GG L   + +HGR++++   + Y  QL+  + Y H  G+ HRD+KPEN+LLD  GV+K  DFG
Sbjct: 1250 KYLVSLASSISNVSMRWQKRNFIGGGTFGRVYSAVDLDNGEILAVKEINIQDSKSMQKIFPLIKEEMSVLEILNHPNIVSYYGVEVHRDKVNIFMEYCEGGSLA-ALLEHGRIEDEMVTQVYTLQLLEGLAYLHESGIVHRDVKPENILLDFNGVIKYVDFG 1410          
BLAST of CN185921 vs. ExPASy Swiss-Prot
Match: SRK1_SCHPO (Serine/threonine-protein kinase srk1 OS=Schizosaccharomyces pombe GN=srk1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.403e-21
Identity = 58/145 (40.00%), Postives = 87/145 (60.00%), Query Frame = 2
Query:  194 KYELGRTLGEGSFAKVKFAKNVETGDFVAIKIVDRDQV-------LRHKMVEQ--IKREISTMKLIKHPNVIKIIEVMASKTKIYIVLEFIDGGELFDKIAKHGRLKEDEARRYFQQLINAVDYCHSR-GVFHRDLKPENLLLDS 598
            +Y L + +G+G+F+ V  A +  TG+ VAIK+V R Q         + + VE   I +E+  M+ +KHPN+I+++E + +    Y+VLE  DGGELF +I +     ED +R    Q+ +A+ Y H   GV HRD+KPENLL DS
Sbjct:  123 QYTLLQKMGDGAFSNVYKAIHNRTGEKVAIKVVQRAQPNTDPRDPRKRQGVESHNILKEVQIMRRVKHPNIIQLLEFIQTPEYYYLVLELADGGELFHQIVRLTYFSEDLSRHVITQVAHAIRYLHEDCGVVHRDIKPENLLFDS 267          
BLAST of CN185921 vs. ExPASy Swiss-Prot
Match: PKD1_DICDI (Developmentally-regulated protein kinase 1 OS=Dictyostelium discoideum GN=pkaD PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 8.403e-21
Identity = 46/152 (30.26%), Postives = 83/152 (54.61%), Query Frame = 2
Query:  179 RTRVGKYELGRTLGEGSFAKVKFAKNVETGDFVAIKIVDRDQVLRHKMVEQIKREISTMKLIKHPNVIKIIEVMASKTKIYIVLEFIDGGELFDKIAKHGRLKEDEARRYFQQLINAVDYCHSRGVFHRDLKPENLLLDSYGVLKISDFGLS 634
            RT++  +    +LG GSF   K  ++  +G F   K + R+ ++  K  E +  EI+ M  I HP ++K      + TKI+ ++E+    +LF  +  +    E   +    +++ A++Y H+  + +RDLKPEN+L+D  G +K++DFG S
Sbjct:  328 RTKISDFNFYGSLGSGSFGTAKLCRHRGSGLFFCSKTLRRETIVHEKHKEHVNNEINIMLNISHPYIVKTYSTFNTPTKIHFIMEYAGKKDLFHHLRANKCFTEQTTKLIVAEIVLAIEYLHAENIIYRDLKPENILIDEKGHIKLTDFGFS 479          
BLAST of CN185921 vs. ExPASy Swiss-Prot
Match: KS6AA_XENLA (Ribosomal protein S6 kinase 2 alpha OS=Xenopus laevis GN=rps6ka PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.403e-21
Identity = 52/162 (32.10%), Postives = 99/162 (61.11%), Query Frame = 2
Query:  161 VKVPASRTRVGKYELGRTLGEGSFAKVKFAKNVETGD---FVAIKIVDRDQV-LRHKMVEQIKREISTMKLIKHPNVIKIIEVMASKTKIYIVLEFIDGGELFDKIAKHGRLKEDEARRYFQQLINAVDYCHSRGVFHRDLKPENLLLDSYGVLKISDFGLS 634
            VK  + +     + L + LG+GSF KV   + +   D     A+K++ +  + +R ++  +++R+I  +  + HP V+++     ++ K+Y++L+F+ GG+LF +++K     E++ + Y  +L   +D+ HS G+ +RDLKPEN+LLD  G +K++DFGLS
Sbjct:   50 VKEGSEKADQSDFVLLKVLGQGSFGKVFLVRKITPPDANQLYAMKVLKKATLKVRDRVRTKMERDI--LADVHHPFVVRLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALGLDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLS 209          

HSP 2 Score: 82.8037 bits (203), Expect = 1.813e-15
Identity = 65/222 (29.28%), Postives = 107/222 (48.20%), Query Frame = 2
Query:   26 PTFSGHRGIKPISFVYP*LYIYARVHSGGVELTAIYRTAEVEKMSVKVPASRTRVGKYELGRTLGEGSFAKVKFAKNVETGDFVAIKIVDRDQVLRHKMVEQIKREISTMKLIKHPNVIKIIEVMASKTKIYIVLEFIDGGELFDKIAKHGRLKEDEARRYFQQLINAVDYCHSRGVFHRDLKPENLL-LDSYG---VLKISDFGLSAISQQVRED-GLLHT 676
            P+   H+  +  SFV P L       +    + ++ +T     + + V         Y +  T+G GS++  K   +  T    A+K++D+ +    + +E ++R        +HPN+I + +V      IY+V E + GGEL D+I +     E EA      +   V+  HS+GV HRDLKP N+L +D  G    ++I DFG    ++Q+R D GLL T
Sbjct:  368 PSAGAHQLFRGFSFVAPALVEEDAKKTSSPPVLSVPKTHSKNILFMDV---------YTVRETIGVGSYSVCKRCVHKGTNMEYAVKVIDKTKRDPSEEIEILRR------YGQHPNIIALKDVYKEGNSIYVVTELMRGGELLDRILRQKFFSEREASSVLFTVCKTVENLHSQGVVHRDLKPSNILYVDESGDPESIRICDFG---FAKQLRADNGLLMT 571          
The following BLAST results are available for this feature:
BLAST of CN185921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IPL1_DEBHA6.434e-2131.54Spindle assembly checkpoint kinase OS=Debaryomyces... [more]
CDPK6_ARATH6.434e-2138.67Calcium-dependent protein kinase 6 OS=Arabidopsis ... [more]
CDKL3_RAT6.434e-2139.60Cyclin-dependent kinase-like 3 OS=Rattus norvegicu... [more]
CDKL3_MOUSE6.434e-2139.60Cyclin-dependent kinase-like 3 OS=Mus musculus GN=... [more]
CDK5_DICDI6.434e-2137.58Cell division protein kinase 5 homolog OS=Dictyost... [more]
AKT2_RAT6.434e-2130.12RAC-beta serine/threonine-protein kinase OS=Rattus... [more]
SSK2_YEAST8.403e-2132.72MAP kinase kinase kinase SSK2 OS=Saccharomyces cer... [more]
SRK1_SCHPO8.403e-2140.00Serine/threonine-protein kinase srk1 OS=Schizosacc... [more]
PKD1_DICDI8.403e-2130.26Developmentally-regulated protein kinase 1 OS=Dict... [more]
KS6AA_XENLA8.403e-2132.10Ribosomal protein S6 kinase 2 alpha OS=Xenopus lae... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002B03_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185921 ID=CN185921; Name=CN185921; organism=Citrus sinensis; type=EST; length=676bp
CTTTTACTTCAAATCTTCGTTCAAACCAACATTTTCAGGCCACAGAGGAA
TAAAGCCAATCTCCTTCGTGTATCCATAACTATATATATACGCGCGCGTG
CACAGCGGTGGTGTGGAATTGACCGCTATATATCGGACGGCGGAGGTTGA
GAAAATGAGCGTGAAAGTACCGGCATCGAGGACACGTGTAGGGAAGTACG
AGTTGGGAAGAACCCTTGGTGAGGGTAGCTTTGCCAAGGTCAAGTTTGCA
AAGAATGTTGAGACCGGAGATTTCGTGGCCATTAAAATTGTTGATCGTGA
TCAAGTCCTTCGTCACAAGATGGTCGAACAGATAAAACGTGAAATATCAA
CAATGAAGCTTATCAAACATCCGAATGTCATTAAAATTATTGAGGTCATG
GCTAGCAAAACAAAGATATACATTGTTCTCGAATTCATTGACGGCGGCGA
GCTCTTCGATAAAATTGCGAAGCATGGAAGATTGAAAGAGGATGAAGCCA
GAAGATATTTCCAGCAGCTCATTAATGCAGTGGACTATTGTCATAGCAGA
GGGGTGTTCCATAGAGATTTGAAGCCAGAGAATCTTCTCCTAGACTCGTA
TGGTGTTCTTAAAATTTCAGATTTTGGTTTGAGTGCAATTTCTCAACAAG
TACGGGAGGATGGGCTGCTTCACACT
back to top