DC900089

Overview
NameDC900089
Unique NameDC900089
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length899
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: AFG32_BOVIN (AFG3-like protein 2 OS=Bos taurus GN=AFG3L2 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.140e-43
Identity = 90/226 (39.82%), Postives = 136/226 (60.18%), Query Frame = 3
Query:   18 LMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVK----LAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKL 683
            L NP+ +  +G K PKG +L GPPGTGKTLLA+A A   +  F+ V  S  ++ ++G     +R++F  AR + PCI+F+DEIDA+G +R         E + TL +LL ++DGF+    V ++  TNRPD+LDPAL+RPGR DR+I I  P+ + R  I K+H   +     ++ E + +    L  GF+GAD+ NVC EA + A R   D +  + F +A+ ++
Sbjct:  328 LKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALMRPGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSTLEKEKLARKLASLTPGFSGADVANVCNEAALIAARHLSDSINQKHFEQAIERV 553          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: TERA1_CAEEL (Transitional endoplasmic reticulum ATPase homolog 1 OS=Caenorhabditis elegans GN=cdc-48.1 PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.489e-43
Identity = 92/218 (42.20%), Postives = 139/218 (63.76%), Query Frame = 3
Query:    6 IELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHED 659
            +ELPL +P+LF  +GIKPP+G+LL+GPPGTGKTL+ARA+A+   + F  +    ++ K  GES   +R+ F     +QP I+F+DEIDAI  +R  E T+ + E +R + +LL  +DG      + +I ATNRP+ +D AL R GR DR+I+I +P+   R+EIL+IH   +    ++D E +     GF GADL ++C+EA +  IR + + +  ED
Sbjct:  226 VELPLRHPQLFKAIGIKPPRGILLFGPPGTGKTLIARAVANETGSFFFLINGPEVMSKMSGESESNLRKAFEECEKNQPAILFIDEIDAIAPKR--EKTNGEVE-RRIVSQLLTLMDGVKGRSNLVVIAATNRPNSIDGALRRFGRFDREIDIGIPDAVGRLEILRIHTKNMKLADDVDLEQIANECHGFVGADLASLCSEAALQQIREKMELIDLED 440          

HSP 2 Score: 174.096 bits (440), Expect = 9.649e-43
Identity = 94/240 (39.17%), Postives = 142/240 (59.17%), Query Frame = 3
Query:    6 IELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAI----GGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESSA 713
            ++ P+ +PE +L+ G++P +GVL YGPPG GKTLLA+AIA+   ANF+ +    ++  + GES   +R++F  AR   PC++F DE+D+I    GG    +G  A     R + ++L ++DG +    V +I ATNRPD++DPA+LRPGRLD+ I IPLP+E SR +ILK          ++D   + K   GF+GADL  +C  A   AIR   +  I  +  +  R+    + +E  A
Sbjct:  499 VQYPVEHPEKYLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCVLFFDELDSIAKARGGGAGGDGGGAS---DRVINQVLTEMDGMNAKKNVFIIGATNRPDIIDPAVLRPGRLDQLIYIPLPDEASRHQILKASLRKTPLSKDLDLTFLAKNTVGFSGADLTEICQRACKLAIRESIEKEIRIEKERQDRQARGEELMEDDA 735          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: FTSH_HELFE (Cell division protease ftsH homolog OS=Helicobacter felis GN=ftsH PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.489e-43
Identity = 94/223 (42.15%), Postives = 139/223 (62.33%), Query Frame = 3
Query:   18 LMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEG-TSADREIQRTLMELLNQLDGF-DQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRK 680
            L  P+ +  +G K PKGVLL GPPGTGKTLLA+A+A      F  +  S+ I+ ++G  A  +R++F  A+   P IIF+DEIDAIG  R + G  S + E ++TL +LL ++DGF  +   V ++ ATNRP++LDPALLRPGR DR++ +  P+ + R+EILK+H   +    ++D + + KL  G  GADL N+  EA + A R  +  V  +   +AV +
Sbjct:  195 LKYPDRYASLGAKIPKGVLLVGPPGTGKTLLAKAVAGEASVPFFSMGGSSFIEMFVGLGASRVRDLFDIAKKEAPSIIFIDEIDAIGKSRAAGGMISGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALLRPGRFDRQVLVDKPDFKGRVEILKVHIKPVKLANDVDLQEIAKLTAGLAGADLANIINEAALLAGRNNQKEVKQQHLKEAVER 417          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: FTSH_BACPF (Cell division protease ftsH homolog OS=Bacillus pseudofirmus GN=ftsH PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.489e-43
Identity = 88/204 (43.14%), Postives = 129/204 (63.24%), Query Frame = 3
Query:   18 LMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 629
            L +P  F  +G + PKGVLL GPPGTGKTLLARA+A      F  +  S  ++ ++G  A  +R++F  A+ + PCIIF+DEIDA+G +R +       E ++TL +LL ++DGF     + +I ATNR D+LDPALLRPGR DR+I++  P+   R E+LK+HA     + +++ + +     GF+GADL N+  EA + A R
Sbjct:  185 LKDPRKFSAIGARIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFSANEGIIIIAATNRADILDPALLRPGRFDRQIQVNRPDVNGREEVLKVHARNKPLNDDVNLKTIATRTPGFSGADLENLLNEAALVAAR 388          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: AFG32_MOUSE (AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.489e-43
Identity = 90/226 (39.82%), Postives = 136/226 (60.18%), Query Frame = 3
Query:   18 LMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVK----LAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKL 683
            L NP+ +  +G K PKG +L GPPGTGKTLLA+A A   +  F+ V  S  ++ ++G     +R++F  AR + PCI+F+DEIDA+G +R         E + TL +LL ++DGF+    V ++  TNRPD+LDPALLRPGR DR+I I  P+ + R  I K+H   +     ++ + + +    L  GF+GAD+ NVC EA + A R   D +  + F +A+ ++
Sbjct:  326 LKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALLRPGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSALEKDKLARKLASLTPGFSGADVANVCNEAALIAARHLSDAINEKHFEQAIERV 551          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: AFG32_HUMAN (AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 1.489e-43
Identity = 90/226 (39.82%), Postives = 136/226 (60.18%), Query Frame = 3
Query:   18 LMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVK----LAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKL 683
            L NP+ +  +G K PKG +L GPPGTGKTLLA+A A   +  F+ V  S  ++ ++G     +R++F  AR + PCI+F+DEIDA+G +R         E + TL +LL ++DGF+    V ++  TNRPD+LDPALLRPGR DR+I I  P+ + R  I K+H   +     ++ + + +    L  GF+GAD+ NVC EA + A R   D +  + F +A+ ++
Sbjct:  327 LKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALLRPGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSTLEKDKLARKLASLTPGFSGADVANVCNEAALIAARHLSDSINQKHFEQAIERV 552          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: FTSH_ODOSI (Cell division protease ftsH homolog OS=Odontella sinensis GN=ftsH PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.944e-43
Identity = 90/222 (40.54%), Postives = 136/222 (61.26%), Query Frame = 3
Query:   18 LMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKL 683
            L  P+ +  VG K PKG+LL GPPGTGKTLLA+AIA+  D  F  V  S  ++ +IG  A  +R++F  A ++ PCI+F+DEIDA+G  R +     + E ++TL +LL ++DGF +   V ++ ATNR D+LD ALLRPGR DR++ + LP+   R+ ILK+HA       ++    +     GF+GADL N+  EA + A R ++  +   +  +A  ++
Sbjct:  205 LKEPDKYTIVGAKIPKGILLVGPPGTGKTLLAKAIANEADVPFFSVAGSEFVEMFIGIGAARVRDLFKKASENAPCIVFIDEIDAVGRERGAGVGGGNDEREQTLNQLLTEMDGFKENKGVIVVGATNRADILDAALLRPGRFDRQVTVNLPDRLGRVGILKVHARNKPLGEDVSLVQLANRTPGFSGADLANLLNEAAILATRYKKSSITKNEVNEAADRI 426          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: FTSH_MYCGE (Cell division protease ftsH homolog OS=Mycoplasma genitalium GN=ftsH PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.944e-43
Identity = 94/222 (42.34%), Postives = 135/222 (60.81%), Query Frame = 3
Query:   18 LMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKL 683
            L NP  + ++G + P+GV+LYGPPGTGKTLLA+A+A      F +   S   D  +G  A+ +R++F  A+   PCIIF+DEID++G +R     S+   +++TL +LL ++DGF     V ++ ATNR DVLD ALLRPGR DR I+I LP+ + R  ILK+HA       +I    V K   GF+GA L NV  EA + A+R  R  +   D  +A+ ++
Sbjct:  250 LKNPLKYAQMGARSPRGVILYGPPGTGKTLLAKAVAGEAGVPFFQSTGSGFEDMLVGVGAKRVRDLFNKAKKAAPCIIFIDEIDSVGSKRGRVELSSYSVVEQTLNQLLAEMDGFTSRTGVVVMAATNRLDVLDDALLRPGRFDRHIQINLPDIKEREGILKVHAENKNLSSKISLLDVAKRTPGFSGAQLENVINEATLLAVRDNRTTININDIDEAIDRV 471          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: FTSH3_SYNY3 (Cell division protease ftsH homolog 3 OS=Synechocystis sp. (strain PCC 6803) GN=sll1463 PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.944e-43
Identity = 91/221 (41.18%), Postives = 137/221 (61.99%), Query Frame = 3
Query:   27 PELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEG-TSADREIQRTLMELLNQLDGFDQLGKVKMIM-ATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKL 683
            P+ +  +G K PKGVLL GPPGTGKTLLA+A A      F  +  S  ++ ++G  A  +R++F  A+   PCI+F+DE+DAIG  R S      + E ++TL +LL ++DGF   G   +++ ATNRP+ LDPALLRPGR DR++ +  P+   R++IL+I+A  I    E++ + +     GF GADL N+  EA + A R ++D V   DF +A+ ++
Sbjct:  196 PQRYTALGAKIPKGVLLVGPPGTGKTLLAKAAAGEAGVPFFIISGSEFVELFVGAGAARVRDLFEQAKKQAPCIVFIDELDAIGKSRASGAFMGGNDEREQTLNQLLTEMDGFSAAGATVIVLAATNRPETLDPALLRPGRFDRQVLVDRPDLAGRLKILEIYAKKIKLDKEVELKNIATRTPGFAGADLANLVNEAALLAARNKQDSVTEADFREAIERV 416          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: FTSH_MYCPN (Cell division protease ftsH homolog OS=Mycoplasma pneumoniae GN=ftsH PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.539e-43
Identity = 96/237 (40.51%), Postives = 140/237 (59.07%), Query Frame = 3
Query:   18 LMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESSAHYNAD 728
            L NP  + ++G + P+GV+LYGPPGTGKTLLA+A+A      F +   S   D  +G  A+ +R++F  A+   PCIIF+DEID++G +R     S+   +++TL +LL ++DGF     V ++ ATNR DVLD ALLRPGR DR I+I LP+ + R  IL++HA       +I    V K   GF+GA L NV  EA + A+R  R  +   D  +A+ ++      +S    +AD
Sbjct:  247 LKNPLKYAQMGARSPRGVILYGPPGTGKTLLAKAVAGEAGVPFFQSTGSGFEDMLVGVGAKRVRDLFNKAKKAAPCIIFIDEIDSVGSKRGRVELSSYSVVEQTLNQLLAEMDGFTSRTGVVVMAATNRLDVLDDALLRPGRFDRHIQINLPDIKEREGILQVHAKNKNLSSKISLLDVAKRTPGFSGAQLENVINEATLLAVRDNRTTINMNDIDEAIDRVIAGPAKKSRVVSDAD 483          
The following BLAST results are available for this feature:
BLAST of DC900089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 389
Match NameE-valueIdentityDescription
AFG32_BOVIN1.140e-4339.82AFG3-like protein 2 OS=Bos taurus GN=AFG3L2 PE=2 S... [more]
TERA1_CAEEL1.489e-4342.20Transitional endoplasmic reticulum ATPase homolog ... [more]
FTSH_HELFE1.489e-4342.15Cell division protease ftsH homolog OS=Helicobacte... [more]
FTSH_BACPF1.489e-4343.14Cell division protease ftsH homolog OS=Bacillus ps... [more]
AFG32_MOUSE1.489e-4339.82AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1... [more]
AFG32_HUMAN1.489e-4339.82AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1... [more]
FTSH_ODOSI1.944e-4340.54Cell division protease ftsH homolog OS=Odontella s... [more]
FTSH_MYCGE1.944e-4342.34Cell division protease ftsH homolog OS=Mycoplasma ... [more]
FTSH3_SYNY31.944e-4341.18Cell division protease ftsH homolog 3 OS=Synechocy... [more]
FTSH_MYCPN2.539e-4340.51Cell division protease ftsH homolog OS=Mycoplasma ... [more]

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Properties
Property NameValue
Genbank descriptionDC900089 VSS Citrus sinensis cDNA clone VS27V05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900089 ID=DC900089; Name=DC900089; organism=Citrus sinensis; type=EST; length=899bp
AATCTATTGAGCTACCTTTGATGAATCCTGAGCTTTTCCTTAGAGTTGGA
ATTAAACCTCCCAAGGGCGTTCTTCTTTATGGGCCTCCTGGAACTGGCAA
GACATTATTAGCACGAGCAATTGCCAGTAACATAGATGCAAATTTTCTGA
AGGTTGTTTCAAGTGCCATTATTGATAAGTACATTGGGGAAAGTGCAAGG
TTGATAAGAGAGATGTTTGGATACGCACGCGATCATCAACCCTGCATCAT
TTTTATGGATGAAATTGATGCCATCGGTGGGCGCCGTTTTAGTGAAGGAA
CCAGTGCAGATCGTGAAATTCAAAGGACACTGATGGAGTTACTTAATCAG
CTTGATGGATTTGATCAGCTTGGGAAGGTTAAAATGATAATGGCCACTAA
CAGACCTGATGTCCTTGACCCTGCACTTCTTCGTCCAGGGCGACTGGATA
GGAAAATTGAGATTCCATTGCCAAATGAGCAGTCAAGAATGGAAATTCTT
AAAATTCATGCTGCTGGCATTGCTAAGCATGGCGAGATTGATTATGAGGC
TGTTGTGAAGCTTGCAGAGGGCTTTAATGGGGCTGATCTCCGAAATGTTT
GCACCGAGGCTGGAATGTCGGCAATCCGTGCTGAACGTGATTATGTCATC
CACGAAGATTTTATGAAGGCTGTCCGGAAACTGAATGAGGCAAAGAAACT
TGAATCAAGTGCTCACTACAATGCTGATTTTGGAAAAGAGTAAAAACATT
TAGGAAAAGAGCCAAGGATCTTGAGGCAGTGCGGTTATTTTTCAGATGTA
ATTGTTTTCATATTTTTGTTAAAACATCTTGCTTTAATTTGTGAAGTTAG
TGGTTCTTTGAGCGATGGAATGCTNTATATATTAAACAATCATTCACGT
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