DC900089

Overview
NameDC900089
Unique NameDC900089
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length899
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: FTSH6_ORYSJ (Cell division protease ftsH homolog 6, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH6 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.254e-42
Identity = 91/208 (43.75%), Postives = 128/208 (61.54%), Query Frame = 3
Query:   27 PELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF-DQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYV 647
            PE F  VG + PKGVLL GPPGTGKTLLA+AIA      F  +  S  I+ ++G  A  +R++F  A+   PC++F+DEIDA+G +R +     + E ++TL +LL ++DGF    G V +I ATNRP++LD ALLRPGR DR++ + LP+ + R EIL +H A       +    V     GF+GADL N+  EA + A R  +D +
Sbjct:  243 PEKFTAVGARTPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFDRAKASAPCLVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFGGGDGGVVVIAATNRPEILDAALLRPGRFDRRVSVGLPDVRGREEILLVHGANKRLDPGVSLAVVAMRTPGFSGADLANLMNEAAILAGRRGKDRI 450          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: FTSH5_ORYSJ (Cell division protease ftsH homolog 5, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH5 PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 8.168e-42
Identity = 91/202 (45.05%), Postives = 125/202 (61.88%), Query Frame = 3
Query:   18 LMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSA 623
            L +P+ F R+G K PKGVLL GPPGTGKT+LARAIA      F     S   + ++G  AR +R++F  A+   PCIIFMDEIDAIGG   S      + ++ TL +LL +LDGF Q   + +I ATN P+ LD AL+RPGR DR I +P P+ + R +IL+ H + + K  ++D   + +   GF+GADL N+   A + A
Sbjct:  249 LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFAAAKKRSPCIIFMDEIDAIGG---SRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQILESHMSKVLKSDDVDLMIIARGTPGFSGADLANLVNVAALKA 447          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: PEX1_MOUSE (Peroxisome biogenesis factor 1 OS=Mus musculus GN=Pex1 PE=1 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 1.820e-41
Identity = 86/209 (41.15%), Postives = 132/209 (63.16%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 629
            +I+LP   PELF  + I+   G+LLYGPPGTGKTLLA  +A     NF+ +    ++ KYIG S + +R++F  A+  +PCI+F DE ++I  RR  + T       R + +LL QLDG + L  V ++ AT+RPD++DPALLRPGRLD+ +  P P++ SR+EIL + +  +A   ++D + V  + + F GADL+ +   A + A++
Sbjct:  856 TIQLPAKYPELFANLPIRQRTGILLYGPPGTGKTLLAGVVARESGMNFISIKGPELLSKYIGASEQAVRDVFIRAQAAKPCILFFDEFESIAPRRGHDNTGV---TDRVVNQLLTQLDGVEGLQGVYVLAATSRPDLIDPALLRPGRLDKCVYCPPPDQVSRLEILTVLSKSLALADDVDLQHVASVTDSFTGADLKALLYNAQLEALQ 1061          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: FTSH_RICTY (Cell division protease ftsH homolog OS=Rickettsia typhi GN=ftsH PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.820e-41
Identity = 92/222 (41.44%), Postives = 133/222 (59.91%), Query Frame = 3
Query:   18 LMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKL 683
            L +P  F ++G K PKG LL GPPGTGKTLLA+AIA   +  F  +  S  ++ ++G  A  +R+MF   + + PCIIF+DEIDA+G  R       + E ++TL ++L ++DGF+    V +I ATNRPDVLD ALLRPGR DR+I +  P+   R +ILK+H   I  +  +    + +   GF+GA+L N+  EA + A R  +  V   D  +A  K+
Sbjct:  174 LRDPSKFQKLGGKIPKGCLLIGPPGTGKTLLAKAIAGEANVPFFSISGSDFVEMFVGVGASRVRDMFEQGKRNAPCIIFIDEIDAVGRHRGIGMGGGNDEREQTLNQMLVEMDGFEANEGVVIIAATNRPDVLDRALLRPGRFDRQIAVANPDINGREQILKVHLKKIKYNSTVLARIIARGTPGFSGAELANLVNEAALIAARLGKKEVDMHDMEEAKDKV 395          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: FTSH_RICPR (Cell division protease ftsH homolog OS=Rickettsia prowazekii GN=ftsH PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.820e-41
Identity = 92/222 (41.44%), Postives = 133/222 (59.91%), Query Frame = 3
Query:   18 LMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKL 683
            L +P  F ++G K PKG LL GPPGTGKTLLA+AIA   +  F  +  S  ++ ++G  A  +R+MF   + + PCIIF+DEIDA+G  R       + E ++TL ++L ++DGF+    V +I ATNRPDVLD ALLRPGR DR+I +  P+   R +ILK+H   I  +  +    + +   GF+GA+L N+  EA + A R  +  V   D  +A  K+
Sbjct:  174 LRDPSKFQKLGGKIPKGCLLIGPPGTGKTLLAKAIAGEANVPFFSISGSDFVEMFVGVGASRVRDMFEQGKRNAPCIIFIDEIDAVGRHRGIGMGGGNDEREQTLNQMLVEMDGFEANEGVVIIAATNRPDVLDRALLRPGRFDRQIAVANPDINGREQILKVHLKKIKYNSTVLARIIARGTPGFSGAELANLVNEAALIAARLGKKEVDMHDMEEAKDKV 395          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: FTSH_RICFE (Cell division protease ftsH homolog OS=Rickettsia felis GN=ftsH PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.820e-41
Identity = 92/222 (41.44%), Postives = 133/222 (59.91%), Query Frame = 3
Query:   18 LMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKL 683
            L +P  F ++G K PKG LL GPPGTGKTLLA+AIA   +  F  +  S  ++ ++G  A  +R+MF   + + PCIIF+DEIDA+G  R       + E ++TL ++L ++DGF+    V +I ATNRPDVLD ALLRPGR DR+I +  P+   R +ILK+H   I  +  +    + +   GF+GA+L N+  EA + A R  +  V   D  +A  K+
Sbjct:  174 LRDPSKFQKLGGKIPKGCLLIGPPGTGKTLLAKAIAGEANVPFFSISGSDFVEMFVGVGASRVRDMFEQGKRNAPCIIFIDEIDAVGRHRGIGMGGGNDEREQTLNQMLVEMDGFEANEGVVIIAATNRPDVLDRALLRPGRFDRQIAVANPDINGREQILKVHLKKIKYNSTVLARIIARGTPGFSGAELANLVNEAALIAARLGKKEVDMHDMEEAKDKV 395          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: FTSH_RICCN (Cell division protease ftsH homolog OS=Rickettsia conorii GN=ftsH PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.820e-41
Identity = 92/222 (41.44%), Postives = 133/222 (59.91%), Query Frame = 3
Query:   18 LMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKL 683
            L +P  F ++G K PKG LL GPPGTGKTLLA+AIA   +  F  +  S  ++ ++G  A  +R+MF   + + PCIIF+DEIDA+G  R       + E ++TL ++L ++DGF+    V +I ATNRPDVLD ALLRPGR DR+I +  P+   R +ILK+H   I  +  +    + +   GF+GA+L N+  EA + A R  +  V   D  +A  K+
Sbjct:  174 LRDPSKFQKLGGKIPKGCLLIGPPGTGKTLLAKAIAGEANVPFFSISGSDFVEMFVGVGASRVRDMFEQGKRNAPCIIFIDEIDAVGRHRGIGMGGGNDEREQTLNQMLVEMDGFEANEGVVIIAATNRPDVLDRALLRPGRFDRQIAVANPDINGREQILKVHLKKIKYNSTVLARIIARGTPGFSGAELANLVNEAALIAARLGKKEVDMHDMEEAKDKV 395          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: FTSH_STRR6 (Cell division protease ftsH homolog OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=ftsH PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.377e-41
Identity = 91/218 (41.74%), Postives = 131/218 (60.09%), Query Frame = 3
Query:   18 LMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKA 671
            L +P+ F ++G + P GVLL GPPGTGKTLLA+A+A      F  +  S  ++ ++G  A  +R +F  A+   P IIF+DEIDA+G +R       + E ++TL +LL ++DGF+    + +I ATNR DVLDPALLRPGR DRK+ +  P+ + R  ILK+HA       ++D + V +   GF GADL NV  EA + A R  +  +   D  +A
Sbjct:  206 LKDPKRFTKLGARIPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAAPAIIFIDEIDAVGRQRGVGLGGGNDEREQTLNQLLIEMDGFEGNEGIIVIAATNRSDVLDPALLRPGRFDRKVLVGRPDVKGREAILKVHAKNKPLAEDVDLKLVAQQTPGFVGADLENVLNEAALVAARRNKSIIDASDIDEA 423          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: FTSH_STRPN (Cell division protease ftsH homolog OS=Streptococcus pneumoniae GN=ftsH PE=3 SV=3)

HSP 1 Score: 169.474 bits (428), Expect = 2.377e-41
Identity = 91/218 (41.74%), Postives = 131/218 (60.09%), Query Frame = 3
Query:   18 LMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKA 671
            L +P+ F ++G + P GVLL GPPGTGKTLLA+A+A      F  +  S  ++ ++G  A  +R +F  A+   P IIF+DEIDA+G +R       + E ++TL +LL ++DGF+    + +I ATNR DVLDPALLRPGR DRK+ +  P+ + R  ILK+HA       ++D + V +   GF GADL NV  EA + A R  +  +   D  +A
Sbjct:  206 LKDPKRFTKLGARIPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRSLFEDAKKAAPAIIFIDEIDAVGRQRGVGLGGGNDEREQTLNQLLIEMDGFEGNEGIIVIAATNRSDVLDPALLRPGRFDRKVLVGRPDVKGREAILKVHAKNKPLAEDVDLKLVAQQTPGFVGADLENVLNEAALVAARRNKSIIDASDIDEA 423          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: TBP7_YEAST (TAT-binding homolog 7 OS=Saccharomyces cerevisiae GN=YTA7 PE=1 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 3.104e-41
Identity = 91/214 (42.52%), Postives = 136/214 (63.55%), Query Frame = 3
Query:    6 IELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVV-----SSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDY-EAVVKLAEGFNGADLRNVCTEAGMSAIR 629
            + LPL+ PEL+    I PP+GVL +GPPGTGKTL+ARA+A++  ++  K+       + I+ K++GE+ R +R +F  A+ HQP IIF DEID +   R S+       I  TL+ L+   DG D  G+V +I ATNRPD +DPAL RPGR DR+   PLP+ ++R +IL+I     +     ++ + +  L +G+ GADLR++CTEA + +I+
Sbjct:  429 VALPLLYPELYQNFNITPPRGVLFHGPPGTGKTLMARALAASCSSDERKITFFMRKGADILSKWVGEAERQLRLLFEEAKKHQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALM---DGMDNRGQVIVIGATNRPDAVDPALRRPGRFDREFYFPLPDVKARFKILQIQTRKWSSPLSTNFIDKLAFLTKGYGGADLRSLCTEAALISIQ 639          
The following BLAST results are available for this feature:
BLAST of DC900089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 389
Match NameE-valueIdentityDescription
FTSH6_ORYSJ6.254e-4243.75Cell division protease ftsH homolog 6, chloroplast... [more]
FTSH5_ORYSJ8.168e-4245.05Cell division protease ftsH homolog 5, mitochondri... [more]
PEX1_MOUSE1.820e-4141.15Peroxisome biogenesis factor 1 OS=Mus musculus GN=... [more]
FTSH_RICTY1.820e-4141.44Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH_RICPR1.820e-4141.44Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH_RICFE1.820e-4141.44Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH_RICCN1.820e-4141.44Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH_STRR62.377e-4141.74Cell division protease ftsH homolog OS=Streptococc... [more]
FTSH_STRPN2.377e-4141.74Cell division protease ftsH homolog OS=Streptococc... [more]
TBP7_YEAST3.104e-4142.52TAT-binding homolog 7 OS=Saccharomyces cerevisiae ... [more]

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Properties
Property NameValue
Genbank descriptionDC900089 VSS Citrus sinensis cDNA clone VS27V05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900089 ID=DC900089; Name=DC900089; organism=Citrus sinensis; type=EST; length=899bp
AATCTATTGAGCTACCTTTGATGAATCCTGAGCTTTTCCTTAGAGTTGGA
ATTAAACCTCCCAAGGGCGTTCTTCTTTATGGGCCTCCTGGAACTGGCAA
GACATTATTAGCACGAGCAATTGCCAGTAACATAGATGCAAATTTTCTGA
AGGTTGTTTCAAGTGCCATTATTGATAAGTACATTGGGGAAAGTGCAAGG
TTGATAAGAGAGATGTTTGGATACGCACGCGATCATCAACCCTGCATCAT
TTTTATGGATGAAATTGATGCCATCGGTGGGCGCCGTTTTAGTGAAGGAA
CCAGTGCAGATCGTGAAATTCAAAGGACACTGATGGAGTTACTTAATCAG
CTTGATGGATTTGATCAGCTTGGGAAGGTTAAAATGATAATGGCCACTAA
CAGACCTGATGTCCTTGACCCTGCACTTCTTCGTCCAGGGCGACTGGATA
GGAAAATTGAGATTCCATTGCCAAATGAGCAGTCAAGAATGGAAATTCTT
AAAATTCATGCTGCTGGCATTGCTAAGCATGGCGAGATTGATTATGAGGC
TGTTGTGAAGCTTGCAGAGGGCTTTAATGGGGCTGATCTCCGAAATGTTT
GCACCGAGGCTGGAATGTCGGCAATCCGTGCTGAACGTGATTATGTCATC
CACGAAGATTTTATGAAGGCTGTCCGGAAACTGAATGAGGCAAAGAAACT
TGAATCAAGTGCTCACTACAATGCTGATTTTGGAAAAGAGTAAAAACATT
TAGGAAAAGAGCCAAGGATCTTGAGGCAGTGCGGTTATTTTTCAGATGTA
ATTGTTTTCATATTTTTGTTAAAACATCTTGCTTTAATTTGTGAAGTTAG
TGGTTCTTTGAGCGATGGAATGCTNTATATATTAAACAATCATTCACGT
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