DC900089

Overview
NameDC900089
Unique NameDC900089
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length899
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10082 contig Csv1_Contig10082:504..1401. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: YME1_YEAST (Protein YME1 OS=Saccharomyces cerevisiae GN=YME1 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 6.058e-37
Identity = 85/202 (42.08%), Postives = 121/202 (59.90%), Query Frame = 3
Query:   18 LMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSA 623
            L +P  +  +G K PKGVLL GPPGTGKTLLARA A     +F  +  S   + Y+G  A+ IR++F  AR   P IIF+DE+DAIGG+R  +  +  ++   TL +LL +LDGF Q   + +I ATN P+ LD AL RPGR D+ + + LP+ + R +ILK H   I     +D   + +   G +GA+L N+  +A + A
Sbjct:  300 LKDPTKYESLGGKLPKGVLLTGPPGTGKTLLARATAGEAGVDFFFMSGSEFDEVYVGVGAKRIRDLFAQARSRAPAIIFIDELDAIGGKRNPKDQAYAKQ---TLNQLLVELDGFSQTSGIIIIGATNFPEALDKALTRPGRFDKVVNVDLPDVRGRADILKHHMKKITLADNVDPTIIARGTPGLSGAELANLVNQAAVYA 498          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: KATL1_DANRE (Katanin p60 ATPase-containing subunit A-like 1 OS=Danio rerio GN=katnal1 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 6.058e-37
Identity = 103/272 (37.87%), Postives = 151/272 (55.51%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL-MELLNQLDGF-------DQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAE-----------------RDYVIHEDFMKAVRKLNE---AKKLESSAHYNADFG 734
            ++ LP+  P+ F  +  +P KGVL+ GPPGTGKT+LA+A+A+     F  V SS +  KY GES +L+R +F  AR + P  IF+DEID+I GRR   GTS + E  R +  ELL Q+DG        D    V ++ ATN P  +D AL R  RL+++I IPLP  + R E+LKI+   +    ++D     +  EG++GAD+ NVC +A M A+R                   +  V  EDF  A++K+++   A  LE    + ++FG
Sbjct:  221 AVVLPMWMPDFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICGRR---GTSDEHEASRRVKSELLVQMDGVGGAQESEDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPTAKGRAELLKINLREVDVASDVDLTVFAEKIEGYSGADITNVCRDASMMAMRRRIQGLSPEEIRALSKDELQMPVTMEDFELALKKISKSVSAADLEKYESWMSEFG 486          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: TBP7_CAEEL (TAT-binding homolog 7 OS=Caenorhabditis elegans GN=lex-1 PE=1 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 7.911e-37
Identity = 89/218 (40.83%), Postives = 129/218 (59.17%), Query Frame = 3
Query:   15 PLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVV-----SSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEI--DYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYV 647
            P++ PE+F +  I PPKGV+ YGPPGTGKTL+ARA+A+       KV       +  + K++GES R +R +F  A   +P IIF DEID +   R S+       I  TL+ L+   DG D  G+V +I ATNR D LDPAL RPGR DR++   LP+  +R +IL IH +   ++  I    +A+ +   G+ GADL+ +CTEA +  +R+   ++
Sbjct:  410 PMLYPEVFEKFRINPPKGVVFYGPPGTGKTLVARALANECRRGANKVAFFMRKGADCLSKWVGESERQLRLLFDQAYAMRPSIIFFDEIDGLAPVRSSKQDQIHASIVSTLLALM---DGLDGRGEVVVIGATNRLDTLDPALRRPGRFDRELRFSLPDLNARRQILDIHTSKWEENKPIPETLDAIAERTSGYCGADLKFLCTEAVLIGLRSRYPHI 624          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: PEX6_SCHPO (Peroxisomal ATPase pex6 OS=Schizosaccharomyces pombe GN=pex6 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 7.911e-37
Identity = 88/221 (39.82%), Postives = 136/221 (61.54%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSAD--REIQRTLMELLNQLDGF--DQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPL-PNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE-GFNGADLRNVCTEAGMSAIRAERDYV 647
            +++LPL  PELF + G+KP  GVLLYGPPGTGKTLLA+A+A+ +   F+ +    +++ Y+GES   +R +F  AR+  PC+IF DE+D+I   R   G S+D    + R + +LL +LD    D    V +I ATNRPD+LDP+LLRPGR D+ + + +  +E+S+  +L+           ID   + K     F GAD+  +C++A +SAI+ + + +
Sbjct:  670 TLQLPLQFPELFSQ-GLKPRSGVLLYGPPGTGKTLLAKAVATELSLEFVSIKGPELLNMYVGESEANVRNVFEKARNSSPCVIFFDELDSIAPHR---GNSSDSGNVMDRVVSQLLAELDSISKDNNKYVFVIGATNRPDLLDPSLLRPGRFDKLVYLGINKSEESKASMLRALTKTFKLDETIDLNEIAKNCHPNFTGADMYALCSDAVLSAIKRKTNEI 886          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: ATAD2_MOUSE (ATPase family AAA domain-containing protein 2 OS=Mus musculus GN=Atad2 PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 7.911e-37
Identity = 87/214 (40.65%), Postives = 126/214 (58.88%), Query Frame = 3
Query:    6 IELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVV-----SSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAG-IAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 629
            +  PL+ PE+F +  I+PP+G L YGPPGTGKTL+ARA+A+       +V       +  + K++GES R +R +F  A   +P IIF DEID +   R S        I  TL+ L+   DG D  G++ +I ATNR D +DPAL RPGR DR+    LP++ +R EILKIH      K  ++  E + +   G+ GAD++++C EA + A+R
Sbjct:   97 VVFPLLYPEVFEKFKIQPPRGCLFYGPPGTGKTLVARALANECSRGDKRVAFFMRKGADCLSKWVGESERQLRLLFDQAYQMRPAIIFFDEIDGLAPVRSSRQDQIHSSIVSTLLALM---DGLDSRGEIVVIGATNRLDSIDPALRRPGRFDREFLFSLPDKNARKEILKIHTRDWNPKPVDMFLEELAEHCVGYCGADIKSICAEAALCALR 307          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: KTNA1_DANRE (Katanin p60 ATPase-containing subunit A1 OS=Danio rerio GN=katna1 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.033e-36
Identity = 102/271 (37.64%), Postives = 156/271 (57.56%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL-MELLNQLDGF------DQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYV------------IH-----EDFMKAVRKLNE---AKKLESSAHYNADFG 734
            ++ LP+  PE F  +  +P KGVL+ GPPGTGKTLLA+A+A+     F  V SS +  KY GES +L+R +F  AR + P  IF+DEID+I  RR   GTS + E  R +  ELL Q+DG       D    V ++ ATN P  +D AL R  RL+++I IPLP+ + R+++LKI+   +    +++ + + +  EG++GAD+ NVC +A + A+R   + +            +H     EDF  A++K+++   A  LE    + A+FG
Sbjct:  219 AVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTLLAKAVATECRTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRR---GTSEEHEASRRVKAELLVQMDGVGGTSENDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPSAKGRVDLLKINLKELDLANDVNMDKIAEQMEGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNLPKDEMHMPTTMEDFETALKKVSKSVSAADLEKYEKWIAEFG 483          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: PEX6_CANGA (Peroxisomal biogenesis factor 6 OS=Candida glabrata GN=PEX6 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.349e-36
Identity = 92/242 (38.02%), Postives = 141/242 (58.26%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGK-VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPN-EQSRMEILKIHAAGIAKHGEIDYEAVVK-LAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESSAHY 719
            +I+LPL +PELF   G+K   G+L YGPPGTGKTLLA+AIA+N   NF  V    +++ YIGES   +R +F  ARD +PC+IF DE+D++  +R ++G S    + R + +LL +LDG    G  V +I ATNRPD+LD ALLRPGR D+ I + + +  + +  I++          +I+++ +V      + GAD   +C++A + A+       I ++  + V K N+      S  Y
Sbjct:  733 TIDLPLKHPELF-GSGLKKRSGILFYGPPGTGKTLLAKAIATNFSLNFFSVKGPELLNMYIGESEANVRRVFQKARDAKPCVIFFDEVDSVAPKRGNQGDSGG-VMDRIVSQLLAELDGMSSDGDGVFIIGATNRPDLLDEALLRPGRFDKLIYLGIADTREKQANIMRALTRKFKVSSDINFDELVSDFPFSYTGADFYALCSDAMLKAMTR-----ISKEIDEKVDKYNQDNGTSISIRY 967          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: ATAD2_HUMAN (ATPase family AAA domain-containing protein 2 OS=Homo sapiens GN=ATAD2 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.349e-36
Identity = 87/214 (40.65%), Postives = 126/214 (58.88%), Query Frame = 3
Query:    6 IELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVV-----SSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAG-IAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 629
            +  PL+ PE+F +  I+PP+G L YGPPGTGKTL+ARA+A+       +V       +  + K++GES R +R +F  A   +P IIF DEID +   R S        I  TL+ L+   DG D  G++ +I ATNR D +DPAL RPGR DR+    LP++++R EILKIH      K  +   E + +   G+ GAD++++C EA + A+R
Sbjct:  442 VVFPLLYPEVFEKFKIQPPRGCLFYGPPGTGKTLVARALANECSQGDKRVAFFMRKGADCLSKWVGESERQLRLLFDQAYQMRPSIIFFDEIDGLAPVRSSRQDQIHSSIVSTLLALM---DGLDSRGEIVVIGATNRLDSIDPALRRPGRFDREFLFSLPDKEARKEILKIHTRDWNPKPLDTFLEELAENCVGYCGADIKSICAEAALCALR 652          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: PEX6_NEUCR (Peroxisomal biogenesis factor 6 OS=Neurospora crassa GN=pex-6 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.762e-36
Identity = 90/235 (38.30%), Postives = 137/235 (58.30%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSA---DREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPN-EQSRMEILKIHAAGIAKHGEIDYEAVV-KLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEA 692
            +I+LPL  PELF + G+K   G+L YGPPGTGKTLLA+AIA+    NF  V    +++ YIGES   +R +F  ARD +PC++F DE+D++  +R ++G S    DR + + L EL     G    G V +I ATNRPD+LDPALLRPGR D+ + + + +    ++ I++        H  +   +V  +L   + GAD   +C++A + A+  +   V  +     +R+LN A
Sbjct: 1006 TIQLPLERPELFAK-GMKKRSGILFYGPPGTGKTLLAKAIATEYSLNFFSVKGPELLNMYIGESEANVRRVFQRARDARPCVVFFDELDSVAPKRGNQGDSGGVMDRIVSQLLAELDGMSGGEGGGGGVFVIGATNRPDLLDPALLRPGRFDKMLYLGVSDTHDKQVTIMEALTRKFTLHPTVSLRSVAERLPFTYTGADFYALCSDAMLKAVTRQATLVDTK-----IRELNAA 1234          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: KTNA1_SALSA (Katanin p60 ATPase-containing subunit A1 OS=Salmo salar GN=katna1 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.762e-36
Identity = 94/233 (40.34%), Postives = 140/233 (60.09%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL-MELLNQLDGF----DQLGKVKMIM---ATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVR 677
            ++ LP+  PE F  +  +P KGVL+ GPPGTGKTLLA+A+A+     F  V SS +  KY GES +L+R +F  AR + P  IF+DEID++  RR   GTS + E  R +  ELL Q+DG     D     KM+M   ATN P  +D AL R  RL+++I IPLP+ + R+E+L+I+   +    ++D   + + +EG++GAD+ NVC +A + A+R   + +  E+     R
Sbjct:  219 AVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTLLAKAVATECRTTFFNVSSSTLTSKYRGESEKLVRILFEMARFYAPTTIFIDEIDSMCSRR---GTSEEHEASRRVKAELLVQMDGVGGASDNEDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPSAKGRVELLRINLKELELANDVDMAKIAEQSEGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNISR 445          
The following BLAST results are available for this feature:
BLAST of DC900089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 389
Match NameE-valueIdentityDescription
YME1_YEAST6.058e-3742.08Protein YME1 OS=Saccharomyces cerevisiae GN=YME1 P... [more]
KATL1_DANRE6.058e-3737.87Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
TBP7_CAEEL7.911e-3740.83TAT-binding homolog 7 OS=Caenorhabditis elegans GN... [more]
PEX6_SCHPO7.911e-3739.82Peroxisomal ATPase pex6 OS=Schizosaccharomyces pom... [more]
ATAD2_MOUSE7.911e-3740.65ATPase family AAA domain-containing protein 2 OS=M... [more]
KTNA1_DANRE1.033e-3637.64Katanin p60 ATPase-containing subunit A1 OS=Danio ... [more]
PEX6_CANGA1.349e-3638.02Peroxisomal biogenesis factor 6 OS=Candida glabrat... [more]
ATAD2_HUMAN1.349e-3640.65ATPase family AAA domain-containing protein 2 OS=H... [more]
PEX6_NEUCR1.762e-3638.30Peroxisomal biogenesis factor 6 OS=Neurospora cras... [more]
KTNA1_SALSA1.762e-3640.34Katanin p60 ATPase-containing subunit A1 OS=Salmo ... [more]

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Properties
Property NameValue
Genbank descriptionDC900089 VSS Citrus sinensis cDNA clone VS27V05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900089 ID=DC900089; Name=DC900089; organism=Citrus sinensis; type=EST; length=899bp
AATCTATTGAGCTACCTTTGATGAATCCTGAGCTTTTCCTTAGAGTTGGA
ATTAAACCTCCCAAGGGCGTTCTTCTTTATGGGCCTCCTGGAACTGGCAA
GACATTATTAGCACGAGCAATTGCCAGTAACATAGATGCAAATTTTCTGA
AGGTTGTTTCAAGTGCCATTATTGATAAGTACATTGGGGAAAGTGCAAGG
TTGATAAGAGAGATGTTTGGATACGCACGCGATCATCAACCCTGCATCAT
TTTTATGGATGAAATTGATGCCATCGGTGGGCGCCGTTTTAGTGAAGGAA
CCAGTGCAGATCGTGAAATTCAAAGGACACTGATGGAGTTACTTAATCAG
CTTGATGGATTTGATCAGCTTGGGAAGGTTAAAATGATAATGGCCACTAA
CAGACCTGATGTCCTTGACCCTGCACTTCTTCGTCCAGGGCGACTGGATA
GGAAAATTGAGATTCCATTGCCAAATGAGCAGTCAAGAATGGAAATTCTT
AAAATTCATGCTGCTGGCATTGCTAAGCATGGCGAGATTGATTATGAGGC
TGTTGTGAAGCTTGCAGAGGGCTTTAATGGGGCTGATCTCCGAAATGTTT
GCACCGAGGCTGGAATGTCGGCAATCCGTGCTGAACGTGATTATGTCATC
CACGAAGATTTTATGAAGGCTGTCCGGAAACTGAATGAGGCAAAGAAACT
TGAATCAAGTGCTCACTACAATGCTGATTTTGGAAAAGAGTAAAAACATT
TAGGAAAAGAGCCAAGGATCTTGAGGCAGTGCGGTTATTTTTCAGATGTA
ATTGTTTTCATATTTTTGTTAAAACATCTTGCTTTAATTTGTGAAGTTAG
TGGTTCTTTGAGCGATGGAATGCTNTATATATTAAACAATCATTCACGT
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