DC900089

Overview
NameDC900089
Unique NameDC900089
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length899
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: PEX6_KLULA (Peroxisomal biogenesis factor 6 OS=Kluyveromyces lactis GN=PEX6 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.302e-36
Identity = 87/211 (41.23%), Postives = 130/211 (61.61%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGK-VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPN-EQSRMEILKIHAAGIAKHGEIDYEAVVKLAE-GFNGADLRNVCTEAGMSAI 626
            +I++PL +PELF   G+K   G+L YGPPGTGKTLLA+AIASN   NF  V    +++ YIGES   +R +F  ARD +PC+IF DE+D++  +R ++G S    + R + +LL +LDG    G  V +I ATNRPD+LD ALLRPGR D+ + + + + ++ +  I+K           ID   + K     + GAD   +C++A ++A+
Sbjct:  717 TIDMPLKHPELFSS-GMKKRSGILFYGPPGTGKTLLAKAIASNFSLNFFSVKGPELLNMYIGESEANVRRVFQKARDAKPCVIFFDELDSVAPKRGNQGDSGG-VMDRIVSQLLAELDGMSSGGDGVFVIGATNRPDLLDEALLRPGRFDKMLYLGISDTDKKQANIIKALTRKFTLESGIDILDIAKKCPFNYTGADFYALCSDALLNAM 925          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: KTNA1_MACFA (Katanin p60 ATPase-containing subunit A1 OS=Macaca fascicularis GN=KATNA1 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 3.006e-36
Identity = 92/217 (42.40%), Postives = 134/217 (61.75%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL-MELLNQLDGF------DQLGKVKMIM-ATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 629
            ++ LP+  PE F  +  +P KGVL+ GPPGTGKTLLA+A+A+     F  V SS +  KY GES +L+R +F  AR + P  IF+DEID+I  RR   GTS + E  R +  ELL Q+DG       D   K+ M++ ATN P  +D AL R  RL+++I IPLP+ + R E+L+I    +    ++D  ++ +  EG++GAD+ NVC +A + A+R
Sbjct:  224 AVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRR---GTSEEHEASRRVKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPSAKGREELLRISLRELELADDVDLASIAENMEGYSGADITNVCRDASLMAMR 434          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: KTNA1_HUMAN (Katanin p60 ATPase-containing subunit A1 OS=Homo sapiens GN=KATNA1 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 3.006e-36
Identity = 92/217 (42.40%), Postives = 134/217 (61.75%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL-MELLNQLDGF------DQLGKVKMIM-ATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 629
            ++ LP+  PE F  +  +P KGVL+ GPPGTGKTLLA+A+A+     F  V SS +  KY GES +L+R +F  AR + P  IF+DEID+I  RR   GTS + E  R +  ELL Q+DG       D   K+ M++ ATN P  +D AL R  RL+++I IPLP+ + R E+L+I    +    ++D  ++ +  EG++GAD+ NVC +A + A+R
Sbjct:  224 AVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRR---GTSEEHEASRRVKAELLVQMDGVGGTSENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPSAKGREELLRISLRELELADDVDLASIAENMEGYSGADITNVCRDASLMAMR 434          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: KTNA1_CHICK (Katanin p60 ATPase-containing subunit A1 OS=Gallus gallus GN=KATNA1 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.926e-36
Identity = 94/233 (40.34%), Postives = 139/233 (59.66%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL-MELLNQLDGF------DQLGKVKMIM-ATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVR 677
            ++ LP+  PE F  +  +P KGVL+ GPPGTGKTLLA+A+A+     F  V SS +  KY GES +L+R +F  AR + P  IF+DEID+I  RR   GTS + E  R +  ELL Q+DG       D   K+ M++ ATN P  +D AL R  RL+++I IPLP+ + R E+L+I+   +    ++D   + +  EG++GAD+ NVC +A + A+R   + +  E+     R
Sbjct:  225 AVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRR---GTSEEHEASRRVKAELLVQMDGVGGATENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPSAKGREELLRINLRELELADDVDLANIAEKMEGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNLSR 451          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: PEX6_PICPA (Peroxisomal biogenesis factor 6 OS=Pichia pastoris GN=PEX6 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 5.128e-36
Identity = 84/213 (39.44%), Postives = 135/213 (63.38%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF---DQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPN-EQSRMEILKIHAAGIAKHGEIDYEAVVKLAE-GFNGADLRNVCTEAGMSAI 626
            +I++P+ +PELF   GIK   G+L YGPPGTGKTLLA+AIA+N   NF  V    +++ YIGES   +R++F  ARD +PC++F DE+D++  +R ++G S +  + R + +LL +LDG    D    V ++ ATNRPD+LD ALLRPGR D+ + + + +  + + +I++  +     H  +D + V +     F GAD   +C++A ++A+
Sbjct:  834 TIDMPMKHPELFSN-GIKKRSGILFYGPPGTGKTLLAKAIATNFALNFFSVKGPELLNMYIGESEANVRKVFQRARDAKPCVVFFDELDSVAPKRGNQGDS-EGVMDRIVSQLLAELDGMSGGDGGDGVFVVGATNRPDLLDEALLRPGRFDKMLYLGVSDTHEKQSKIMEALSRKFHLHPSVDLDKVAESCPFTFTGADFYALCSDAMLNAM 1044          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: PEX6_DEBHA (Peroxisomal biogenesis factor 6 OS=Debaryomyces hansenii GN=PEX6 PE=3 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 5.128e-36
Identity = 89/236 (37.71%), Postives = 142/236 (60.17%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGK-----VKMIMATNRPDVLDPALLRPGRLDRKIEIPLPN-EQSRMEILKIHAAGIAKHGEID-YEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNE 689
            +I++PL +PELF   G+K   G+L YGPPGTGKTLLA+AIA+N   NF  V    +++ YIGES   +R +F  ARD +PC+IF DE+D++  +R ++G S    + R + +LL +LDG     +     V ++ ATNRPD+LD ALLRPGR D+ + + + + ++ + +IL+           +D YE   + +  F GAD   +C+++ ++A+    + V  +     ++KLNE
Sbjct:  854 TIDMPLKHPELFSN-GLKKRSGILFYGPPGTGKTLLAKAIATNFSLNFFSVKGPELLNMYIGESEANVRRVFQKARDAKPCVIFFDELDSVAPKRGNQGDSGG-VMDRIVSQLLAELDGMSGGAEGGGDGVFVVGATNRPDLLDEALLRPGRFDKMLYLGISDTDEKQSKILEALTRKFKLADNVDLYEIAKRCSFTFTGADFYALCSDSMLNAMTRTANEVDAK-----IKKLNE 1082          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: KTNA1_MOUSE (Katanin p60 ATPase-containing subunit A1 OS=Mus musculus GN=Katna1 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 5.128e-36
Identity = 93/234 (39.74%), Postives = 140/234 (59.83%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL-MELLNQLDGF------DQLGKVKMIM-ATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRK 680
            ++ LP+  PE F  +  +P KGVL+ GPPGTGKTLLA+A+A+     F  V SS +  KY GES +L+R +F  AR + P  IF+DEID+I  RR   GTS + E  R +  ELL Q+DG       D   K+ M++ ATN P  +D AL R  RL+++I IPLP+ + R E+L+I    +    +++  ++ +  EG++GAD+ NVC +A + A+R   + +  E+     R+
Sbjct:  224 AVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRR---GTSEEHEASRRMKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPSAKGREELLRISLRELELADDVNLASIAENMEGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNLSRE 451          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: PEX6_YEAST (Peroxisomal ATPase PEX6 OS=Saccharomyces cerevisiae GN=PEX6 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.697e-36
Identity = 84/211 (39.81%), Postives = 131/211 (62.09%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD-QLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPN-EQSRMEILKIHAAGIAKHGEIDYEAVVKLAE-GFNGADLRNVCTEAGMSAI 626
            +I++PL +PELF   G+K   G+L YGPPGTGKTL+A+AIA+N   NF  V    +++ YIGES   +R +F  AR+ +PC+IF DEID++  +R ++G S    + R + +LL +LDG       V +I ATNRPD+LD ALLRPGR D+ + + +P+ +  ++ IL+          ++    + KL    + GAD   +C++A ++A+
Sbjct:  747 TIDMPLKHPELFTS-GMKKRSGILFYGPPGTGKTLMAKAIATNFSLNFFSVKGPELLNMYIGESEANVRRVFQKAREAKPCVIFFDEIDSVAPKRGNQGDSGG-VMDRIVSQLLAELDGMSTDADGVFVIGATNRPDLLDEALLRPGRFDKLLYLGIPDTDTKQLNILEALTRKFVLDNDVKLIELAKLCPFNYTGADFYALCSDAMLNAM 955          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: KTNA1_RAT (Katanin p60 ATPase-containing subunit A1 OS=Rattus norvegicus GN=Katna1 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.697e-36
Identity = 93/234 (39.74%), Postives = 140/234 (59.83%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL-MELLNQLDGF------DQLGKVKMIM-ATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRK 680
            ++ LP+  PE F  +  +P KGVL+ GPPGTGKTLLA+A+A+     F  V SS +  KY GES +L+R +F  AR + P  IF+DEID+I  RR   GTS + E  R +  ELL Q+DG       D   K+ M++ ATN P  +D AL R  RL+++I IPLP+ + R E+L+I    +    +++  ++ +  EG++GAD+ NVC +A + A+R   + +  E+     R+
Sbjct:  224 AVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRR---GTSEEHEASRRVKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPSAKGREELLRISLRELELADDVNLASIAENMEGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNLSRE 451          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: KATL1_PAPAN (Katanin p60 ATPase-containing subunit A-like 1 OS=Papio anubis GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.697e-36
Identity = 92/217 (42.40%), Postives = 133/217 (61.29%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL-MELLNQLDGF------DQLGKVKMIM-ATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 629
            ++ LP+  P+ F  +  +P KGVL+ GPPGTGKT+LA+A+A+     F  V SS +  KY GES +L+R +F  AR + P  IF+DEID+I  RR   GTS + E  R +  ELL Q+DG       D   K+ M++ ATN P  +D AL R  RL+++I IPLP  + R E+LKI+   +    +I  E + +  EG++GAD+ NVC +A + A+R
Sbjct:  223 AVVLPMWMPDFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRR---GTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDASLMAMR 433          
The following BLAST results are available for this feature:
BLAST of DC900089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 389
Match NameE-valueIdentityDescription
PEX6_KLULA2.302e-3641.23Peroxisomal biogenesis factor 6 OS=Kluyveromyces l... [more]
KTNA1_MACFA3.006e-3642.40Katanin p60 ATPase-containing subunit A1 OS=Macaca... [more]
KTNA1_HUMAN3.006e-3642.40Katanin p60 ATPase-containing subunit A1 OS=Homo s... [more]
KTNA1_CHICK3.926e-3640.34Katanin p60 ATPase-containing subunit A1 OS=Gallus... [more]
PEX6_PICPA5.128e-3639.44Peroxisomal biogenesis factor 6 OS=Pichia pastoris... [more]
PEX6_DEBHA5.128e-3637.71Peroxisomal biogenesis factor 6 OS=Debaryomyces ha... [more]
KTNA1_MOUSE5.128e-3639.74Katanin p60 ATPase-containing subunit A1 OS=Mus mu... [more]
PEX6_YEAST6.697e-3639.81Peroxisomal ATPase PEX6 OS=Saccharomyces cerevisia... [more]
KTNA1_RAT6.697e-3639.74Katanin p60 ATPase-containing subunit A1 OS=Rattus... [more]
KATL1_PAPAN6.697e-3642.40Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC900089 VSS Citrus sinensis cDNA clone VS27V05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900089 ID=DC900089; Name=DC900089; organism=Citrus sinensis; type=EST; length=899bp
AATCTATTGAGCTACCTTTGATGAATCCTGAGCTTTTCCTTAGAGTTGGA
ATTAAACCTCCCAAGGGCGTTCTTCTTTATGGGCCTCCTGGAACTGGCAA
GACATTATTAGCACGAGCAATTGCCAGTAACATAGATGCAAATTTTCTGA
AGGTTGTTTCAAGTGCCATTATTGATAAGTACATTGGGGAAAGTGCAAGG
TTGATAAGAGAGATGTTTGGATACGCACGCGATCATCAACCCTGCATCAT
TTTTATGGATGAAATTGATGCCATCGGTGGGCGCCGTTTTAGTGAAGGAA
CCAGTGCAGATCGTGAAATTCAAAGGACACTGATGGAGTTACTTAATCAG
CTTGATGGATTTGATCAGCTTGGGAAGGTTAAAATGATAATGGCCACTAA
CAGACCTGATGTCCTTGACCCTGCACTTCTTCGTCCAGGGCGACTGGATA
GGAAAATTGAGATTCCATTGCCAAATGAGCAGTCAAGAATGGAAATTCTT
AAAATTCATGCTGCTGGCATTGCTAAGCATGGCGAGATTGATTATGAGGC
TGTTGTGAAGCTTGCAGAGGGCTTTAATGGGGCTGATCTCCGAAATGTTT
GCACCGAGGCTGGAATGTCGGCAATCCGTGCTGAACGTGATTATGTCATC
CACGAAGATTTTATGAAGGCTGTCCGGAAACTGAATGAGGCAAAGAAACT
TGAATCAAGTGCTCACTACAATGCTGATTTTGGAAAAGAGTAAAAACATT
TAGGAAAAGAGCCAAGGATCTTGAGGCAGTGCGGTTATTTTTCAGATGTA
ATTGTTTTCATATTTTTGTTAAAACATCTTGCTTTAATTTGTGAAGTTAG
TGGTTCTTTGAGCGATGGAATGCTNTATATATTAAACAATCATTCACGT
back to top