DC900089

Overview
NameDC900089
Unique NameDC900089
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length899
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: KATL1_OTOGA (Katanin p60 ATPase-containing subunit A-like 1 OS=Otolemur garnettii GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.697e-36
Identity = 92/217 (42.40%), Postives = 133/217 (61.29%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL-MELLNQLDGF------DQLGKVKMIM-ATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 629
            ++ LP+  P+ F  +  +P KGVL+ GPPGTGKT+LA+A+A+     F  V SS +  KY GES +L+R +F  AR + P  IF+DEID+I  RR   GTS + E  R +  ELL Q+DG       D   K+ M++ ATN P  +D AL R  RL+++I IPLP  + R E+LKI+   +    +I  E + +  EG++GAD+ NVC +A + A+R
Sbjct:  223 AVVLPMWMPDFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRR---GTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDASLMAMR 433          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: KATL1_HUMAN (Katanin p60 ATPase-containing subunit A-like 1 OS=Homo sapiens GN=KATNAL1 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.697e-36
Identity = 92/217 (42.40%), Postives = 133/217 (61.29%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL-MELLNQLDGF------DQLGKVKMIM-ATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 629
            ++ LP+  P+ F  +  +P KGVL+ GPPGTGKT+LA+A+A+     F  V SS +  KY GES +L+R +F  AR + P  IF+DEID+I  RR   GTS + E  R +  ELL Q+DG       D   K+ M++ ATN P  +D AL R  RL+++I IPLP  + R E+LKI+   +    +I  E + +  EG++GAD+ NVC +A + A+R
Sbjct:  223 AVVLPMWMPDFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRR---GTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDASLMAMR 433          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: PRS2_METJA (Putative 26S protease regulatory subunit homolog MJ1494 OS=Methanocaldococcus jannaschii GN=MJ1494 PE=3 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 8.747e-36
Identity = 84/223 (37.67%), Postives = 140/223 (62.78%), Query Frame = 3
Query:   18 LMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGM-SAIRAERDYVIHEDFMKAVRKL 683
            L NP+LF   G   PK VL YGPPGTGKTL+ARA+A+  +++F+ V +  +I +++G+++++IRE++  A +  PCI+F+DE+DAIG  R  E  S   ++   +  LL +LDG  +   V  I ATN P +LDPA+    R + +IE  LPN++ R++I++++A  +    + + +  V+  +GF+G D++    +  +  AI  +RDYV  ED   A++K+
Sbjct:  143 LENPKLF---GEWAPKNVLFYGPPGTGKTLMARALATETNSSFILVKAPELIGEHVGDASKMIRELYQRASESAPCIVFIDELDAIGLSR--EYQSLRGDVSEVVNALLTELDGIKENEGVVTIAATNNPAMLDPAI--RSRFEEEIEFKLPNDEERLKIMELYAKKMPLPVKANLKEFVEKTKGFSGRDIKEKFLKPALHRAILEDRDYVSKEDLEWALKKI 358          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: PEX6_DICDI (Peroxisomal biogenesis factor 6 OS=Dictyostelium discoideum GN=pex6 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.747e-36
Identity = 97/258 (37.60%), Postives = 147/258 (56.98%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNE-QSRMEILKIHAAGIAKHGEIDYEAVVK-LAEGFNGADLRNVCTEAGMSA----IRAERDYVIHED------------FMKAVRKLNEAKKLESSAHYN 722
            +I+LPL +P LF   GI    G+LL+GPPGTGKTLLA+AIA+    NFL V    +I+ YIGES + IRE+F  AR  +PC+IF DE+D++   R   G  +   + R + +LL +LDG  +   V +I ATNRPD+LD +L+RPGRLDR + + + +E +++ +IL+          ++D   VV+       GAD   + ++A  +A    I A  +  I+E+            F+KAV  L  +  L+   +Y+
Sbjct:  934 TIQLPLEHPHLFAS-GIGKRSGILLFGPPGTGKTLLAKAIATECSLNFLSVKGPELINMYIGESEKNIREIFNKARQAKPCVIFFDELDSLAPSR-GNGADSGGVMDRVVSQLLAELDGMQKSSDVFIIGATNRPDLLDSSLMRPGRLDRLLYLGISSEKENQFKILQALTRKFNLADDVDLRKVVENCPMNLTGADFYALASDAMSNAFHERITASINGEINEEEQNQKLIVYQNHFIKAVNSLVPSVSLDELEYYH 1189          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: NSF1_DROME (Vesicle-fusing ATPase 1 OS=Drosophila melanogaster GN=comt PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.747e-36
Identity = 96/248 (38.71%), Postives = 147/248 (59.27%), Query Frame = 3
Query:   27 PELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSA-IIDKYIGESARLIREMFGYARDHQPC--------IIFMDEIDAIGGRRFSEGTSADREIQRTLM-ELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAK----HGEIDYEAVVKLAEGFNGADLRNVCTEAGMSA----IRAERDYVIHEDFMKAVRKLNEAKKLESSAH 716
            PEL  ++G K  KG+LLYGPPGTGKTL+AR I + ++A   K+V+   I+DKY+GES   +R +F  A + +          II  DEIDAI  +R S   + +  +  T++ +LL ++DG DQL  + +I  TNR D++D ALLRPGRL+ ++EI LPNEQ R++IL IH   + +    + ++D + +  L + F+GA+L  +   A  SA    I+A+    +  + M+ + K+N    L S  H
Sbjct:  242 PELVEQLGCKHVKGILLYGPPGTGKTLMARQIGTMLNAREPKIVNGPQILDKYVGESEANVRRLFAEAEEEEKRLGPNSGLHIIIFDEIDAICKQRGS--VAGNSGVHDTVVNQLLTKIDGVDQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEISLPNEQGRVQILNIHTKRMREFNKINDDVDNKEIAALTKNFSGAELEGLVRAAQSSAMNRLIKADAKVTVDPEAMEKL-KVNRDDFLHSLEH 486          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: KTNA1_XENTR (Katanin p60 ATPase-containing subunit A1 OS=Xenopus tropicalis GN=katna1 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.747e-36
Identity = 91/233 (39.06%), Postives = 138/233 (59.23%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL-MELLNQLDGF-------DQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVR 677
            ++ LP+  PE F  +  +P KGVL+ GPPGTGKTLLA+A+A+     F  + SS +  KY GES +L+R +F  AR + P  IF+DEID+I  RR   GTS + E  R +  ELL Q+DG        D    V ++ ATN P  +D AL R  RL+++I IPLP+ + R E+L+I+   +    +++ E + +  +G++GAD+ NVC +A + A+R   + +  E+     R
Sbjct:  225 AVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNISSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRR---GTSEEHEASRRVKAELLVQMDGVGGASENEDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPSAKGREELLRINLKELELADDVNIECIAENMDGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNLSR 451          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: KTNA1_XENLA (Katanin p60 ATPase-containing subunit (Fragment) OS=Xenopus laevis GN=katna1 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.747e-36
Identity = 91/233 (39.06%), Postives = 138/233 (59.23%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL-MELLNQLDGF-------DQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVR 677
            ++ LP+  PE F  +  +P KGVL+ GPPGTGKTLLA+A+A+     F  + SS +  KY GES +L+R +F  AR + P  IF+DEID+I  RR   GTS + E  R +  ELL Q+DG        D    V ++ ATN P  +D AL R  RL+++I IPLP+ + R E+L+I+   +    +++ E + +  +G++GAD+ NVC +A + A+R   + +  E+     R
Sbjct:  221 AVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNISSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRR---GTSEEHEASRRVKAELLVQMDGVGGASENEDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPSAKGREELLRINLKELELADDVNIECIAENMDGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNLSR 447          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: PEX1_DICDI (Peroxisome biogenesis factor 1 OS=Dictyostelium discoideum GN=pex1 PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.492e-35
Identity = 87/243 (35.80%), Postives = 135/243 (55.56%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESSAHYNADF 731
            +IE P   P+LF    ++   G+LLYGP G GKTLLA AIA     NF+ V    +++KYIG S + +R++F  A   +PC++F DE D+I  RR  + +       R + + L QLDG + L  V ++ AT+RPD++DPALLRPGRLD+ +   +P    R++IL    + +     I  E +    + + GADLR +   A + +I    +++  E+  K  RK  E +  ++S+    DF
Sbjct:  881 TIEWPTKYPKLFQSSPLRLRSGILLYGPTGCGKTLLASAIAGECGLNFISVKGPELLNKYIGSSEQGVRDVFSRASSAKPCVLFFDEFDSIAPRRGHDNSGV---TDRVVNQFLTQLDGVEGLTGVYVLAATSRPDLIDPALLRPGRLDKSLYCNIPEFNERLDILTCLKSKMNLSPSISLEQLSTNTQYYTGADLRALMYNAQLKSIHEWMNHL--EEEKKRKRKEKEDQSNKNSSQQQDDF 1118          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: KATL1_SORAR (Katanin p60 ATPase-containing subunit A-like 1 OS=Sorex araneus GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.492e-35
Identity = 91/217 (41.94%), Postives = 133/217 (61.29%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL-MELLNQLDGF------DQLGKVKMIM-ATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 629
            ++ LP+  P+ F  +  +P KGVL+ GPPGTGKT+LA+A+A+     F  V SS +  KY GES +L+R +F  AR + P  IF+DEID+I  RR   GTS + E  R +  ELL Q+DG       D   K+ M++ ATN P  +D AL R  RL+++I IPLP  + R ++LKI+   +    +I  E + +  EG++GAD+ NVC +A + A+R
Sbjct:  223 AVVLPMWMPDFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRR---GTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPTAKGRTDLLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDASLMAMR 433          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: KATL1_RAT (Katanin p60 ATPase-containing subunit A-like 1 OS=Rattus norvegicus GN=Katnal1 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.492e-35
Identity = 91/217 (41.94%), Postives = 132/217 (60.83%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL-MELLNQLDGF------DQLGKVKMIM-ATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 629
            ++ LP+  P+ F  +  +P KGVL+ GPPGTGKT+LA+A+A+     F  V SS +  KY GES +L+R +F  AR + P  IF+DEID+I  RR   GTS + E  R +  ELL Q+DG       D   K+ M++ ATN P  +D AL R  RL+++I IPLP  + R E+LKI    +    +I  E + +  EG++GAD+ N+C +A + A+R
Sbjct:  221 AVVLPMWMPDFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRR---GTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPTAKGRAELLKISLREVELDPDIHLEDIAEKTEGYSGADITNICRDASLMAMR 431          
The following BLAST results are available for this feature:
BLAST of DC900089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 389
Match NameE-valueIdentityDescription
KATL1_OTOGA6.697e-3642.40Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_HUMAN6.697e-3642.40Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
PRS2_METJA8.747e-3637.67Putative 26S protease regulatory subunit homolog M... [more]
PEX6_DICDI8.747e-3637.60Peroxisomal biogenesis factor 6 OS=Dictyostelium d... [more]
NSF1_DROME8.747e-3638.71Vesicle-fusing ATPase 1 OS=Drosophila melanogaster... [more]
KTNA1_XENTR8.747e-3639.06Katanin p60 ATPase-containing subunit A1 OS=Xenopu... [more]
KTNA1_XENLA8.747e-3639.06Katanin p60 ATPase-containing subunit (Fragment) O... [more]
PEX1_DICDI1.492e-3535.80Peroxisome biogenesis factor 1 OS=Dictyostelium di... [more]
KATL1_SORAR1.492e-3541.94Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_RAT1.492e-3541.94Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionDC900089 VSS Citrus sinensis cDNA clone VS27V05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900089 ID=DC900089; Name=DC900089; organism=Citrus sinensis; type=EST; length=899bp
AATCTATTGAGCTACCTTTGATGAATCCTGAGCTTTTCCTTAGAGTTGGA
ATTAAACCTCCCAAGGGCGTTCTTCTTTATGGGCCTCCTGGAACTGGCAA
GACATTATTAGCACGAGCAATTGCCAGTAACATAGATGCAAATTTTCTGA
AGGTTGTTTCAAGTGCCATTATTGATAAGTACATTGGGGAAAGTGCAAGG
TTGATAAGAGAGATGTTTGGATACGCACGCGATCATCAACCCTGCATCAT
TTTTATGGATGAAATTGATGCCATCGGTGGGCGCCGTTTTAGTGAAGGAA
CCAGTGCAGATCGTGAAATTCAAAGGACACTGATGGAGTTACTTAATCAG
CTTGATGGATTTGATCAGCTTGGGAAGGTTAAAATGATAATGGCCACTAA
CAGACCTGATGTCCTTGACCCTGCACTTCTTCGTCCAGGGCGACTGGATA
GGAAAATTGAGATTCCATTGCCAAATGAGCAGTCAAGAATGGAAATTCTT
AAAATTCATGCTGCTGGCATTGCTAAGCATGGCGAGATTGATTATGAGGC
TGTTGTGAAGCTTGCAGAGGGCTTTAATGGGGCTGATCTCCGAAATGTTT
GCACCGAGGCTGGAATGTCGGCAATCCGTGCTGAACGTGATTATGTCATC
CACGAAGATTTTATGAAGGCTGTCCGGAAACTGAATGAGGCAAAGAAACT
TGAATCAAGTGCTCACTACAATGCTGATTTTGGAAAAGAGTAAAAACATT
TAGGAAAAGAGCCAAGGATCTTGAGGCAGTGCGGTTATTTTTCAGATGTA
ATTGTTTTCATATTTTTGTTAAAACATCTTGCTTTAATTTGTGAAGTTAG
TGGTTCTTTGAGCGATGGAATGCTNTATATATTAAACAATCATTCACGT
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