DC900089

Overview
NameDC900089
Unique NameDC900089
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length899
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10082 contig Csv1_Contig10082:504..1401. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: KATL1_RABIT (Katanin p60 ATPase-containing subunit A-like 1 OS=Oryctolagus cuniculus GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.949e-35
Identity = 92/217 (42.40%), Postives = 132/217 (60.83%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL-MELLNQLDGF------DQLGKVKMIM-ATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 629
            ++ LP+  P+ F  +  +P KGVL+ GPPGTGKT+LA+A+A+     F  V SS +  KY GES +L+R +F  AR + P  IF+DEID+I  RR   GTS + E  R +  ELL Q+DG       D   K+ M++ ATN P  +D AL R  RL+++I IPLP  + R E+LKI    +    +I  E + +  EG++GAD+ NVC +A + A+R
Sbjct:  223 AVVLPMWMPDFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRR---GTSDEHEASRRVKSELLVQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPTAKGRAELLKISLREVELDPDIRLEDIAEKIEGYSGADITNVCRDASLMAMR 433          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: YME1_SCHMA (Protein YME1 homolog OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.545e-35
Identity = 79/203 (38.92%), Postives = 122/203 (60.10%), Query Frame = 3
Query:   18 LMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRR-FSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSA 623
            L NPE F ++G K PKGVLL GPPG GKTLLA+A++      FL    S+  +  +G  A  IR++F  A+ + PC++F+DEID++GG R FS          +T+ +LL ++DGF     + ++ ATN+ +VLD ALLRPGR D +I +  P  + R+ +L ++   +     ID E +     G+ GAD++N+  +A ++A
Sbjct:  185 LRNPEKFNQIGAKLPKGVLLVGPPGVGKTLLAKAVSGEAQVPFLYASGSSFDEVLVGLGASRIRQLFTTAKQNSPCLVFIDEIDSVGGNRTFSPHHPF---ANQTINQLLAEMDGFQSKEGIIVLGATNQAEVLDKALLRPGRFDVQIHVSPPTYEGRIALLNLYLKKVKTGSNIDIEKLAHGTVGYTGADIQNLVNQAAIAA 384          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: TBP7_CAEBR (TAT-binding homolog 7 OS=Caenorhabditis briggsae GN=lex-1 PE=3 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 3.324e-35
Identity = 86/218 (39.45%), Postives = 126/218 (57.80%), Query Frame = 3
Query:   15 PLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVV-----SSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEI--DYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYV 647
            P++ PE+F +  I PPKGV+ YGPPGTGKTL+ARA+A+       KV       +  + K++GES R +R +F  A   +P IIF DEID +   R S+       I  TL+ L+   DG D  G+V +I ATNR D LDPAL RPGR DR++   LP+  +R  IL IH +   ++       + + +   G+ GADL+ +CTE+ +  +R+   ++
Sbjct:  424 PMLYPEVFAKFKINPPKGVVFYGPPGTGKTLVARALANECRRGANKVAFFMRKGADCLSKWVGESERQLRLLFDQAYAMRPSIIFFDEIDGLAPVRSSKQDQIHASIVSTLLALM---DGLDGRGEVVVIGATNRLDSLDPALRRPGRFDRELRFSLPDLNARRHILDIHTSKWEENKPTPETLDGIAEKTSGYCGADLKFLCTESVLIGLRSRYPHI 638          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: PEX6_MOUSE (Peroxisome assembly factor 2 OS=Mus musculus GN=Pex6 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.324e-35
Identity = 98/244 (40.16%), Postives = 140/244 (57.38%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE-------GFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESSA 713
            +I+LPL +PEL L +G++   G+LL+GPPGTGKTLLA+A+A+     FL V    +I+ Y+G+S   +RE+F  AR   PCIIF DE+D++   R   G S    + R + +LL +LDG      V +I ATNRPD+LDPALLRPGR D+ + +     + R   L++ +A   K      EA V LA           GADL ++C++A M+A++            + VR L E  +L SSA
Sbjct:  721 TIQLPLEHPEL-LSLGLRR-SGLLLHGPPGTGKTLLAKAVATECSLTFLSVKGPELINMYVGQSEENVREVFARARAAAPCIIFFDELDSLAPSRGRSGDSGG-VMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPALLRPGRFDKLVFVGA--SEDRASQLRVLSAITRK---FKLEASVSLANVLDCCPPQLTGADLYSLCSDAMMTALK------------RRVRDLEEGLELRSSA 944          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: PEX1_SCHPO (Peroxisomal ATPase pex1 OS=Schizosaccharomyces pombe GN=pex1 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.324e-35
Identity = 79/211 (37.44%), Postives = 129/211 (61.14%), Query Frame = 3
Query:    6 IELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVK----LAEGFNGADLRNVCTEAGMSAI 626
            IE P+    ++ +  ++ P G+LL+G PG GKT LA AI+S     F+ +    ++DKYIG+S + +R++F  A+  +PC++F DE D++  RR  + T       R + ++L Q+DG + L  V ++ AT RPD++DPALLRPGRLD+ I   LPNE+ R+E+L+     +A    I+  A++K    L +G+  ADL ++  +A + A+
Sbjct:  622 IESPVKYSLIYKQCRLRLPTGILLFGYPGCGKTYLASAISSTFPVQFISIKGPELLDKYIGKSEQGVRDLFSRAQMAKPCVLFFDEFDSVAPRRGQDSTGV---TDRVVNQILTQMDGAESLDGVYIVAATTRPDMIDPALLRPGRLDKLIFCDLPNEEERLEVLQ----KLANRFHIENAAMLKKLSTLTDGYTYADLSSLLYDAHLIAV 825          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: KATL1_MOUSE (Katanin p60 ATPase-containing subunit A-like 1 OS=Mus musculus GN=Katnal1 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.324e-35
Identity = 90/217 (41.47%), Postives = 131/217 (60.37%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL-MELLNQLDGF------DQLGKVKMIM-ATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 629
            ++ LP+  P+ F  +  +P KGVL+ GPPGTGKT+LA+A+A+     F  V SS +  KY GES +L+R +F  AR + P  IF+DEID+I  RR   GTS + E  R +  ELL Q+DG       D   K+ M++ ATN P  +D AL R  RL+++I IPLP  + R E+LKI    +    ++  E +    EG++GAD+ N+C +A + A+R
Sbjct:  221 AVVLPMWMPDFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRR---GTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPTAKGRAELLKISLREVELDPDVHLEDIADKTEGYSGADITNICRDASLMAMR 431          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: ATD2B_HUMAN (ATPase family AAA domain-containing protein 2B OS=Homo sapiens GN=ATAD2B PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 5.670e-35
Identity = 86/214 (40.19%), Postives = 124/214 (57.94%), Query Frame = 3
Query:    6 IELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVV-----SSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAG-IAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 629
            +  PL+ PE+F +  I+PP+G L YGPPGTGKTL+ARA+A+       KV       +  + K++GES R +R +F  A   +P IIF DEID +   R S        I  TL+ L+   DG D  G++ +I ATNR D +DPAL RPGR DR+    LP++++R  IL+IH      K  +     + +   G+ GAD++ +CTEA + A+R
Sbjct:  416 VVFPLLYPEIFEKFKIQPPRGCLFYGPPGTGKTLVARALANECSQGDKKVAFFMRKGADCLSKWVGESERQLRLLFDQAYLMRPSIIFFDEIDGLAPVRSSRQDQIHSSIVSTLLALM---DGLDNRGEIVVIGATNRLDSIDPALRRPGRFDREFLFNLPDQKARKHILQIHTRDWNPKLSDAFLGELAEKCVGYCGADIKALCTEAALIALR 626          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: KTNA1_STRPU (Katanin p60 ATPase-containing subunit OS=Strongylocentrotus purpuratus GN=KATNA1 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 9.671e-35
Identity = 96/261 (36.78%), Postives = 154/261 (59.00%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL-MELLNQLDGF------DQLGKVKMIM-ATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESSAHYNADFGKE*KHLGKE 761
            ++ LPL  P+ F  +  +P KGVL+ GPPGTGKT+LA+A+A+     F  V S+++  KY GES +L+R +F  AR + P  IF+DEID+I  +R   GT ++ E  R +  ELL Q+DG       ++  K+ M++ ATN P  +D AL R  RL+++I IPLP    R ++L+I+   +    +ID +++ +  +G++GAD+ NVC +A M A+R  R   +  + ++ + K  E  +  + A +     K  K +GKE
Sbjct:  249 AVVLPLWMPDYFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSASLTSKYHGESEKLVRLLFEMARFYAPSTIFIDEIDSICSKR---GTGSEHEASRRVKSELLIQMDGVSGPSAGEESSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPEIDGREQLLRINLKEVPLADDIDLKSIAEKMDGYSGADITNVCRDASMMAMR-RRIQGLRPEEIRHIPK-EELNQPSTPADFLLALQKVSKSVGKE 501          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: FIGL1_CAEBR (Fidgetin-like protein 1 OS=Caenorhabditis briggsae GN=figl-1 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.650e-34
Identity = 88/230 (38.26%), Postives = 137/230 (59.57%), Query Frame = 3
Query:    6 IELPLMNPELFLRVGIK-PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIM--ATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDY--EAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYV--IHEDFMKAV 674
            + LP   P++F   G++ PPKGVLL+GPPGTGKT++ R +AS   A F  + +S++  K++GE  +L+R +F  AR   P +IF+DEID++   R      + R I+    E L QLDG +     ++++  ATNRP  LD A  R  R  +++ I LP   SR +I++    G  +H   D+  E + +L +G++GAD+R +CTEA M  IR   D +  I++D ++AV
Sbjct:  332 VVLPFQRPDIF--TGLRAPPKGVLLFGPPGTGKTMIGRCVASQAQATFFNISASSLTSKWVGEGEKLVRALFSVARLKLPSVIFIDEIDSLLSARSESEHESSRRIK---TEFLVQLDGVNTAPDERLLVLGATNRPQELDEAARR--RFQKRLYIALPEPDSRTQIVENLLRG-TRHEITDHNLEKIRRLTDGYSGADMRQLCTEAAMGPIREIGDQIATINKDDIRAV 553          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: PEX6_PICAN (Peroxisomal biogenesis factor 6 OS=Pichia angusta GN=PEX6 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.814e-34
Identity = 82/213 (38.50%), Postives = 130/213 (61.03%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQL---GKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPN-EQSRMEILKIHAAGIAKHGEIDYEAVVKLAE-GFNGADLRNVCTEAGMSAI 626
            +IE+PL +PELF + G+K   G+L YGPPGTGKTLLA+AIA+N   NF  V    +++ YIGES   +R +F  ARD +PC+IF DE+D++  +R ++G S    + R + +LL +LDG         V ++ ATNRPD+LD ALLRPGR D+ + + + +  + + +I++           +D   + +     + GAD   +C++A ++A+
Sbjct:  828 TIEMPLKHPELFSK-GMKKRSGILFYGPPGTGKTLLAKAIATNFALNFFSVKGPELLNMYIGESEANVRRVFQKARDAKPCVIFFDELDSVAPKRGNQGDSGG-VMDRIVSQLLAELDGMSGAEGGDGVFVVGATNRPDLLDEALLRPGRFDKMLYLGIADTHEKQAKIIQALTRKFQLDPSVDLGRIAETCPFTYTGADFYALCSDAMLNAM 1038          
The following BLAST results are available for this feature:
BLAST of DC900089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 389
Match NameE-valueIdentityDescription
KATL1_RABIT1.949e-3542.40Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
YME1_SCHMA2.545e-3538.92Protein YME1 homolog OS=Schistosoma mansoni PE=2 S... [more]
TBP7_CAEBR3.324e-3539.45TAT-binding homolog 7 OS=Caenorhabditis briggsae G... [more]
PEX6_MOUSE3.324e-3540.16Peroxisome assembly factor 2 OS=Mus musculus GN=Pe... [more]
PEX1_SCHPO3.324e-3537.44Peroxisomal ATPase pex1 OS=Schizosaccharomyces pom... [more]
KATL1_MOUSE3.324e-3541.47Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
ATD2B_HUMAN5.670e-3540.19ATPase family AAA domain-containing protein 2B OS=... [more]
KTNA1_STRPU9.671e-3536.78Katanin p60 ATPase-containing subunit OS=Strongylo... [more]
FIGL1_CAEBR1.650e-3438.26Fidgetin-like protein 1 OS=Caenorhabditis briggsae... [more]
PEX6_PICAN2.814e-3438.50Peroxisomal biogenesis factor 6 OS=Pichia angusta ... [more]

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Properties
Property NameValue
Genbank descriptionDC900089 VSS Citrus sinensis cDNA clone VS27V05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900089 ID=DC900089; Name=DC900089; organism=Citrus sinensis; type=EST; length=899bp
AATCTATTGAGCTACCTTTGATGAATCCTGAGCTTTTCCTTAGAGTTGGA
ATTAAACCTCCCAAGGGCGTTCTTCTTTATGGGCCTCCTGGAACTGGCAA
GACATTATTAGCACGAGCAATTGCCAGTAACATAGATGCAAATTTTCTGA
AGGTTGTTTCAAGTGCCATTATTGATAAGTACATTGGGGAAAGTGCAAGG
TTGATAAGAGAGATGTTTGGATACGCACGCGATCATCAACCCTGCATCAT
TTTTATGGATGAAATTGATGCCATCGGTGGGCGCCGTTTTAGTGAAGGAA
CCAGTGCAGATCGTGAAATTCAAAGGACACTGATGGAGTTACTTAATCAG
CTTGATGGATTTGATCAGCTTGGGAAGGTTAAAATGATAATGGCCACTAA
CAGACCTGATGTCCTTGACCCTGCACTTCTTCGTCCAGGGCGACTGGATA
GGAAAATTGAGATTCCATTGCCAAATGAGCAGTCAAGAATGGAAATTCTT
AAAATTCATGCTGCTGGCATTGCTAAGCATGGCGAGATTGATTATGAGGC
TGTTGTGAAGCTTGCAGAGGGCTTTAATGGGGCTGATCTCCGAAATGTTT
GCACCGAGGCTGGAATGTCGGCAATCCGTGCTGAACGTGATTATGTCATC
CACGAAGATTTTATGAAGGCTGTCCGGAAACTGAATGAGGCAAAGAAACT
TGAATCAAGTGCTCACTACAATGCTGATTTTGGAAAAGAGTAAAAACATT
TAGGAAAAGAGCCAAGGATCTTGAGGCAGTGCGGTTATTTTTCAGATGTA
ATTGTTTTCATATTTTTGTTAAAACATCTTGCTTTAATTTGTGAAGTTAG
TGGTTCTTTGAGCGATGGAATGCTNTATATATTAAACAATCATTCACGT
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