DC900089

Overview
NameDC900089
Unique NameDC900089
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length899
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: PEX1_PICPA (Peroxisome biosynthesis protein PAS1 OS=Pichia pastoris GN=PEX1 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.824e-33
Identity = 75/208 (36.06%), Postives = 122/208 (58.65%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAI 626
            ++E P     +F    ++   G+LLYG PG GKTLLA A+A+    NF+ +    I++KYIG S + +RE+F  A+  +PCI+F DE D+I  +R  + T       R + ++L Q+DG + L  V ++ AT+RPD++D ALLRPGRLD+ +   +P+   R++IL+     +     ++  +V     GF+GADL+ +   A + A+
Sbjct:  814 TLEWPTKYAPIFSSCPLRLRSGILLYGYPGCGKTLLASAVAAQCGLNFISIKGPEILNKYIGPSEQSVRELFERAQAAKPCILFFDEFDSIAPKRGHDSTGV---TDRVVNQMLTQMDGAEGLDGVYVLAATSRPDLIDSALLRPGRLDKSVICDMPDFDDRLDILQSVTRNMNVSKSVNLSSVAGECSGFSGADLQALAYNAYLKAV 1018          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: MSP1_YEAST (Protein MSP1 OS=Saccharomyces cerevisiae GN=MSP1 PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.824e-33
Identity = 84/212 (39.62%), Postives = 123/212 (58.02%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGI-KPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL-MELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGI-AKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 629
            S+  PLM PE++    + + P GVLLYGPPG GKT+LA+A+A    ANF+ +  S+I+DK+ GES +++  MF  A   QPCIIF+DEID+       E +S D E+  TL  E +   DG    G+V +I ATNR + +D A LR  RL ++  + LP    R +IL +          E D + +    +GF+G+DL+ +C EA + A +
Sbjct:  106 SVIYPLMMPEVYSNSPLLQAPSGVLLYGPPGCGKTMLAKALAKESGANFISIRMSSIMDKWYGESNKIVDAMFSLANKLQPCIIFIDEIDSF----LRERSSTDHEVTATLKAEFMTLWDGLLNNGRVMIIGATNRINDIDDAFLR--RLPKRFLVSLPGSDQRYKILSVLLKDTKLDEDEFDLQLIADNTKGFSGSDLKELCREAALDAAK 311          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: FIGL1_RAT (Fidgetin-like protein 1 OS=Rattus norvegicus GN=Fignl1 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.824e-33
Identity = 89/259 (34.36%), Postives = 142/259 (54.83%), Query Frame = 3
Query:   15 PLMNPELFLRVGIK-PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDG--FDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEI-LKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERD---------------YVIHEDFMKAVRKLNEAKKLESSAHYNADFG 734
            P+M P++F   G++ PPKG+LL+GPPGTGKTL+ + IAS   A F  + +S++  K++GE  +++R +F  AR  QP +IF+DEID++  +R   G       +R   E L QLDG       ++ ++ ATNRP  +D A  R  RL +++ IPLP   +R +I + + +       + + E VV+ ++GF+GAD+  +C EA +  IR+                  Y+  E+  + VR     K LE   ++N  FG
Sbjct:  423 PMMRPDIF--TGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQR---GDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVVNLMSKEQCCLTDEETELVVQQSDGFSGADMTQLCREASLGPIRSLHTADIATISPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTFG 674          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: MEI1_CAEEL (Meiotic spindle formation protein mei-1 OS=Caenorhabditis elegans GN=mei-1 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.111e-33
Identity = 88/215 (40.93%), Postives = 134/215 (62.33%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPP-KGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL-MELLNQLDG----FDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 629
            ++ LPL+ PE F   G++ P K ++L GPPGTGKTL+ARAIAS   + F  V S+ +  K+ G+S +++R +F  AR + P IIF+DEID +GG+R   G S + E  R +  E L Q+DG    FD   +V ++ ATN P  LD AL R  R +++I IPLP+  +R ++++    G  K  EI+Y+ +    EGF+GAD+ ++C  A ++ +R
Sbjct:  208 AVTLPLLVPEFFQ--GLRSPWKAMVLAGPPGTGKTLIARAIASESSSTFFTVSSTDLSSKWRGDSEKIVRLLFELARFYAPSIIFIDEIDTLGGQR---GNSGEHEASRRVKSEFLVQMDGSQNKFDS-RRVFVLAATNIPWELDEALRR--RFEKRIFIPLPDIDARKKLIEKSMEGTPKSDEINYDDLAARTEGFSGADVVSLCRTAAINVLR 414          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: FIGL1_HUMAN (Fidgetin-like protein 1 OS=Homo sapiens GN=FIGNL1 PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 3.111e-33
Identity = 87/259 (33.59%), Postives = 142/259 (54.83%), Query Frame = 3
Query:   15 PLMNPELFLRVGIK-PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDG--FDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEI-LKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERD---------------YVIHEDFMKAVRKLNEAKKLESSAHYNADFG 734
            P++ P++F   G++ PPKG+LL+GPPGTGKTL+ + IAS   A F  + +S++  K++GE  +++R +F  AR  QP +IF+DEID++  +R   G       +R   E L QLDG       ++ ++ ATNRP  +D A  R  RL +++ IPLP   +R +I + + +       E + E +V+ ++ F+GAD+  +C EA +  IR+ +                Y+  E+  + VR     K LE   ++N  FG
Sbjct:  420 PMLRPDIF--TGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQR---GDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTFG 671          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: SPAST_XENTR (Spastin OS=Xenopus tropicalis GN=spast PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 5.307e-33
Identity = 89/263 (33.84%), Postives = 151/263 (57.41%), Query Frame = 3
Query:   12 LPLMNPELFLRVGIKPP-KGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLG--KVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHG----EIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR------------AERDYVIHEDFMKAVRKLN---EAKKLESSAHYNADFG 734
            LP + PELF   G++ P +G+LL+GPPG GKT+LA+A+A+  +A F  + ++++  KY+GE  +L+R +F  AR+ QP IIF+DE+D++   R      A R ++    E L + DG    G  +V ++ ATNRP  LD A+LR  R  +++ + LPNE++R+ +LK     ++K G    E +   + +L EG++G+D+  +  +A +  IR            +E   + + DF+ +++K+        LES   +N +FG
Sbjct:  347 LPSIRPELF--TGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFSVARELQPSIIFIDEVDSLLCERREGEHDASRRLK---TEFLIEFDGVQSGGDDRVLVMGATNRPQELDDAVLR--RFTKRVYVSLPNEETRLLLLK---NLLSKQGNPLNEKELTQLSRLTEGYSGSDITALAKDAALGPIRELKPEQVKNMAASEMRNIKYSDFLSSLKKIKCSVSPSTLESYIRWNKEFG 599          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: SPAST_XENLA (Spastin OS=Xenopus laevis GN=spast PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 5.307e-33
Identity = 90/263 (34.22%), Postives = 151/263 (57.41%), Query Frame = 3
Query:   12 LPLMNPELFLRVGIKPP-KGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLG--KVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHG----EIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR------------AERDYVIHEDFMKAVRKLN---EAKKLESSAHYNADFG 734
            LP + PELF   G++ P +G+LL+GPPG GKT+LA+A+A+  +A F  + ++++  KY+GE  +L+R +F  AR+ QP IIF+DE+D++   R      A R ++    E L + DG    G  +V ++ ATNRP  LD A+LR  R  +++ + LPNE++R+ +LK     ++K G    E +   + +L EG++G+D+  +  +A +  IR            +E   + + DF+ +++K+        LES   +N DFG
Sbjct:  344 LPSIRPELF--TGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFSVARELQPSIIFIDEVDSLLCERREGEHDASRRLK---TEFLIEFDGVQSGGDDRVLVMGATNRPQELDDAVLR--RFTKRVYVALPNEETRLVLLK---NLLSKQGNPLSEKELTQLSRLTEGYSGSDITALAKDAALGPIRELKPEQVKNMAASEMRNMKYSDFLGSLKKIKCSVSHSTLESYIRWNQDFG 596          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: VPS4_SCHPO (Suppressor protein of bem1/bed5 double mutants OS=Schizosaccharomyces pombe GN=vps4 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.182e-32
Identity = 79/210 (37.62%), Postives = 133/210 (63.33%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGI-AKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 629
            ++ LP+  P+LF   G KP  G+LLYGPPGTGK+ LA+A+A+   + F  + SS ++ K++GES RL+R++F  AR+ +P IIF+DEID++ G R    + + R I+   +  +N + G D+ G V ++ ATN P  LD A+ R  R +++I IPLPN  +R  + +++   I ++    D++ + K+ +G++G+D+  V  +A M  +R
Sbjct:  144 TVLLPIKLPQLFSH-GRKPWSGILLYGPPGTGKSYLAKAVATEAGSTFFSISSSDLVSKWMGESERLVRQLFEMAREQKPSIIFIDEIDSLCGSRSEGESESSRRIKTEFLVQMNGV-GKDESG-VLVLGATNIPWTLDSAIRR--RFEKRIYIPLPNAHARARMFELNVGKIPSELTSQDFKELAKMTDGYSGSDISIVVRDAIMEPVR 348          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: SPAST_PIG (Spastin (Fragment) OS=Sus scrofa GN=SPAST PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 1.182e-32
Identity = 88/263 (33.46%), Postives = 151/263 (57.41%), Query Frame = 3
Query:   12 LPLMNPELFLRVGIKPP-KGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLG--KVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHG----EIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR------------AERDYVIHEDFMKAVRKLNEA---KKLESSAHYNADFG 734
            LP + PELF   G++ P +G+LL+GPPG GKT+LA+A+A+  +A F  + ++++  KY+GE  +L+R +F  AR+ QP IIF+DE+D++   R      A R ++    E L + DG    G  +V ++ ATNRP  LD A+LR  R  +++ + LPNE++R+ +LK     + K G    + +   + +L +G++G+DL  +  +A +  IR            +E   +   DF ++++K+  +   + LE+   +N DFG
Sbjct:  357 LPSLRPELF--TGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLRERREGEHDASRRLK---TEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLK---NLLCKQGSPLTQKELAQLARLTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFG 609          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: SPAST_DROWI (Spastin OS=Drosophila willistoni GN=spas PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.182e-32
Identity = 89/264 (33.71%), Postives = 145/264 (54.92%), Query Frame = 3
Query:   12 LPLMNPELFLRVGIKPP-KGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGE-IDYEA---VVKLAEGFNGADLRNVCTEAGMSAIR------------------AERDYVIHEDFMKAVRKLNEAKKLESSAHYNADFG 734
            LP + PELF   G++ P KG+LL+GPPG GKTLLARA+A+   A FL + ++++  KY+G+  +L+R +F  AR  QP IIF+DE+D++   R S    A R ++   +   + L G     ++ ++ ATNRP  LD A LR  R  +++ + LP+EQ+R  +L      + K G  +D EA   + K+ EG++G+DL  +  +A +  IR                   E+D+    + +K +R+    + L S   ++ D+G
Sbjct:  520 LPSVRPELF--TGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSNEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLN---RLLQKQGSPLDTEALRRLAKITEGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRPITEKDF---HNSLKRIRRSVAPQSLNSYEKWSQDYG 773          
The following BLAST results are available for this feature:
BLAST of DC900089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 389
Match NameE-valueIdentityDescription
PEX1_PICPA1.824e-3336.06Peroxisome biosynthesis protein PAS1 OS=Pichia pas... [more]
MSP1_YEAST1.824e-3339.62Protein MSP1 OS=Saccharomyces cerevisiae GN=MSP1 P... [more]
FIGL1_RAT1.824e-3334.36Fidgetin-like protein 1 OS=Rattus norvegicus GN=Fi... [more]
MEI1_CAEEL3.111e-3340.93Meiotic spindle formation protein mei-1 OS=Caenorh... [more]
FIGL1_HUMAN3.111e-3333.59Fidgetin-like protein 1 OS=Homo sapiens GN=FIGNL1 ... [more]
SPAST_XENTR5.307e-3333.84Spastin OS=Xenopus tropicalis GN=spast PE=2 SV=1[more]
SPAST_XENLA5.307e-3334.22Spastin OS=Xenopus laevis GN=spast PE=2 SV=1[more]
VPS4_SCHPO1.182e-3237.62Suppressor protein of bem1/bed5 double mutants OS=... [more]
SPAST_PIG1.182e-3233.46Spastin (Fragment) OS=Sus scrofa GN=SPAST PE=2 SV=... [more]
SPAST_DROWI1.182e-3233.71Spastin OS=Drosophila willistoni GN=spas PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionDC900089 VSS Citrus sinensis cDNA clone VS27V05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900089 ID=DC900089; Name=DC900089; organism=Citrus sinensis; type=EST; length=899bp
AATCTATTGAGCTACCTTTGATGAATCCTGAGCTTTTCCTTAGAGTTGGA
ATTAAACCTCCCAAGGGCGTTCTTCTTTATGGGCCTCCTGGAACTGGCAA
GACATTATTAGCACGAGCAATTGCCAGTAACATAGATGCAAATTTTCTGA
AGGTTGTTTCAAGTGCCATTATTGATAAGTACATTGGGGAAAGTGCAAGG
TTGATAAGAGAGATGTTTGGATACGCACGCGATCATCAACCCTGCATCAT
TTTTATGGATGAAATTGATGCCATCGGTGGGCGCCGTTTTAGTGAAGGAA
CCAGTGCAGATCGTGAAATTCAAAGGACACTGATGGAGTTACTTAATCAG
CTTGATGGATTTGATCAGCTTGGGAAGGTTAAAATGATAATGGCCACTAA
CAGACCTGATGTCCTTGACCCTGCACTTCTTCGTCCAGGGCGACTGGATA
GGAAAATTGAGATTCCATTGCCAAATGAGCAGTCAAGAATGGAAATTCTT
AAAATTCATGCTGCTGGCATTGCTAAGCATGGCGAGATTGATTATGAGGC
TGTTGTGAAGCTTGCAGAGGGCTTTAATGGGGCTGATCTCCGAAATGTTT
GCACCGAGGCTGGAATGTCGGCAATCCGTGCTGAACGTGATTATGTCATC
CACGAAGATTTTATGAAGGCTGTCCGGAAACTGAATGAGGCAAAGAAACT
TGAATCAAGTGCTCACTACAATGCTGATTTTGGAAAAGAGTAAAAACATT
TAGGAAAAGAGCCAAGGATCTTGAGGCAGTGCGGTTATTTTTCAGATGTA
ATTGTTTTCATATTTTTGTTAAAACATCTTGCTTTAATTTGTGAAGTTAG
TGGTTCTTTGAGCGATGGAATGCTNTATATATTAAACAATCATTCACGT
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