DC900089

Overview
NameDC900089
Unique NameDC900089
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length899
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10082 contig Csv1_Contig10082:504..1401. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: SPAST_DICDI (Spastin OS=Dictyostelium discoideum GN=DDB_G0287165 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.230e-31
Identity = 89/263 (33.84%), Postives = 148/263 (56.27%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIK-PPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLG--KVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHG--EIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRA-----------ERDYVIHEDF---MKAVRKLNEAKKLESSAHYNADFG 734
            S+ LP + P++F   G++ PPKG+LL+GPPG GKT++A+A+A      F  + SS++  KY+G+  +L+R +F  A   QP IIF+DEID++   R S  + A R ++    E+L Q DG    G  +V ++ ATNRP+ LD A LR  RL ++I + LP  ++R++I++ H     +H   +    ++ ++ +G++G DL  +C +A    IR            E   +  +DF   +K +R    ++ L+S   +N  FG
Sbjct:  399 SVILPNLRPDVF--TGLRAPPKGLLLFGPPGNGKTMIAKAVAYESKVTFFSISSSSLTSKYVGDGEKLVRALFAVATHFQPSIIFIDEIDSLLTERSSNESEASRRLK---TEILVQFDGARTNGDERVLVMGATNRPEDLDDAALR--RLVKRIYVGLPELETRLQIIQ-HLLVGQRHSLTKQQINSLAEVTQGYSGFDLAALCKDAAYEPIRRLGIGIKDLELNEISLISFKDFANSLKQIRPSVTSQSLKSFEKWNQKFG 653          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: VPS4_YEAST (Vacuolar protein sorting-associated protein 4 OS=Saccharomyces cerevisiae GN=VPS4 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.912e-31
Identity = 81/210 (38.57%), Postives = 130/210 (61.90%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGI-AKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 629
            ++ LP+  P LF +   KP  G+LLYGPPGTGK+ LA+A+A+  ++ F  V SS ++ K++GES +L++++F  AR+++P IIF+DE+DA+ G R    + A R I+  L+  +N + G D  G V ++ ATN P  LD A+ R  R +R+I IPLP+  +R  + +I+         + DY  +  + EG++G+D+  V  +A M  IR
Sbjct:  148 AVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGEGESEASRRIKTELLVQMNGV-GNDSQG-VLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIR 352          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: TBP6_YEAST (Probable 26S protease subunit YTA6 OS=Saccharomyces cerevisiae GN=YTA6 PE=1 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 2.912e-31
Identity = 81/232 (34.91%), Postives = 134/232 (57.76%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQL---------GKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILK-IHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMK 668
            ++  P + P+LF  +  +P +G+LL+GPPGTGKT++A+A+A+  ++ F  V +S+++ KY+GES +L+R +F  A+   P IIF+DEID++   R      + R I+  L+   + L                +V ++ ATN P  +D A  R  R  RK+ IPLP+ ++R+  LK + A       ++DYE + ++ EGF+G+DL ++  EA M  IR   D ++  DF K
Sbjct:  486 AVVYPFLRPDLFKGLR-EPVRGMLLFGPPGTGKTMIAKAVATESNSTFFSVSASSLLSKYLGESEKLVRALFYMAKKLSPSIIFIDEIDSMLTARSDNENESSRRIKTELLIQWSSLSSATAQSEDRNNTLDSRVLVLGATNLPWAIDDAARR--RFSRKLYIPLPDYETRLYHLKRLMAKQKNSLQDLDYELITEMTEGFSGSDLTSLAKEAAMEPIRDLGDKLMFADFDK 714          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: SPAST_DROPE (Spastin OS=Drosophila persimilis GN=spas PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.912e-31
Identity = 86/261 (32.95%), Postives = 145/261 (55.56%), Query Frame = 3
Query:   12 LPLMNPELFLRVGIKPP-KGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGE-IDYEA---VVKLAEGFNGADLRNVCTEAGMSAIRA------------ERDYVIHEDF---MKAVRKLNEAKKLESSAHYNADFG 734
            LP + PELF   G++ P KG+LL+GPPG GKTLLARA+A+   A FL + ++++  KY+G+  +L+R +F  AR  QP IIF+DE+D++   R S    A R ++   +   + L G     ++ ++ ATNRP  LD A LR  R  +++ + LP+EQ+R  +L      + K G  +D +A   + K+ +G++G+DL  +  +A +  IR                ++  +DF   +K +R+    + L     +++D+G
Sbjct:  531 LPSVRPELF--TGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHLQPSIIFIDEVDSLLSERSSGEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLN---RLLQKQGSPLDTDALRRLSKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDINAMRHITEKDFHNSLKRIRRSVAPQSLSLYEKWSSDYG 784          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: ATD1B_DANRE (ATPase family AAA domain-containing protein 1-B OS=Danio rerio GN=atad1b PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 2.912e-31
Identity = 86/242 (35.54%), Postives = 130/242 (53.72%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGI-KPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR-------AERDY---VIHEDFMKAVRKLNEAK 695
            ++ LP+    LF    + +PPKGVLLYGPPG GKTL+A+A A      F+ +  S + DK+ GES +L   +F  A   QP IIF+DEID+    R S    A   ++   M L + LD  D   +V ++ ATNRP  LD A+LR  R+  +  I  PN + R +ILK+          ++   + K  +GF+G+DLR +C +A +  +R        E D+   +  ED  +A+ K+ ++K
Sbjct:  110 TVILPIQKRHLFEGSRLLQPPKGVLLYGPPGCGKTLIAKATAKEAGFRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSFLRNRSSSDHEATAMMKAQFMSLWDGLD-TDYNCQVIIMGATNRPQDLDSAILR--RMPTRFHINQPNVRQRKDILKLILENENVESAVELSEIAKQTDGFSGSDLREMCRDAALLCVRDFVHQESPEEDFIRPIRQEDLQRAIEKMKKSK 348          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: ATD1A_DANRE (ATPase family AAA domain-containing protein 1-A OS=Danio rerio GN=atad1a PE=2 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 3.803e-31
Identity = 78/199 (39.20%), Postives = 116/199 (58.29%), Query Frame = 3
Query:   51 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYV 647
            ++PPKGVLLYGPPG GKTL+A+A A      F+ + +S + DK+ GES +L   +F  A   QPCIIF+DEID+    R S    A   ++   M L + LD  +   +V ++ ATNRP  +D A+LR  R+     + LPN   R EIL++  +G      I+ + +   +EG++G+DL+ +C +A M  +   RDYV
Sbjct:  126 LQPPKGVLLYGPPGCGKTLIAKATAKASGCRFINLQASTLTDKWYGESQKLTAAVFSLAVKIQPCIIFLDEIDSFLRNRSSMDHEATAMMKAQFMSLWDGLDTGEN-SQVMVMGATNRPQDVDAAILR--RMPTAFHVGLPNAAQREEILRLILSGENLSNAINLKEIASQSEGYSGSDLKELCRDAAMYRV---RDYV 318          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: SPAST_ANOGA (Spastin OS=Anopheles gambiae GN=spas PE=3 SV=5)

HSP 1 Score: 134.42 bits (337), Expect = 8.472e-31
Identity = 82/259 (31.66%), Postives = 140/259 (54.05%), Query Frame = 3
Query:   12 LPLMNPELFLRVGIKPP-KGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILK--IHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR------------AERDYVIHEDFMKAVRKLNEAKKLESSAHYN---ADFG 734
            LP + PELF   G++ P KG+LL+GPPG GKTLLARA+A+   A F  + ++ +  KY+G+  +L+R +F  AR+ QP IIF+DE+D++   R S    A R ++   +   + L    +  ++ ++ ATNRP  LD A LR  R  +++ + LP+  +R  +L+  +   G +   + D   + +L EG++G+DL  +  +A +  IR             +   +   DF  +++++  +   +S A Y     DFG
Sbjct:  521 LPSVRPELF--TGLRTPAKGLLLFGPPGNGKTLLARAVATECSATFFSISAATLTSKYVGDGEKLVRALFAVARELQPSIIFIDEVDSVLSERSSNEHEATRRLKTEFLVQFDGLPANSEADRIVVMAATNRPQELDEAALR--RFPKRVYVTLPDRDTRELLLRRLLQKQG-SPLSDADLAHLAQLTEGYSGSDLTALARDAALEPIRELNVEEVKNMDPTKLRSIRESDFHNSLKRIRRSVAPQSLAAYEKWLQDFG 774          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: MPA_MYCTU (Proteasome-associated ATPase OS=Mycobacterium tuberculosis GN=mpa PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 8.472e-31
Identity = 78/203 (38.42%), Postives = 127/203 (62.56%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI----------DAN-----FLKVVSSAIIDKYIGESARLIREMFGYARDH----QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLM-ELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEI--------LKIHAAGIAK 527
            ++ELP ++ EL+    ++PPKGVLLYGPPG GKTL+A+A+A+++          DA+     FL +    +++K++GE+ R IR +F  AR+      P I+F DE+D+I   R   GT    +++ T++ +LL+++DG + L  V +I A+NR D++DPA+LRPGRLD KI+I  P+ ++  +I        L +HA  +A+
Sbjct:  267 AVELPFLHKELYREYSLRPPKGVLLYGPPGCGKTLIAKAVANSLAKKMAEVRGDDAHEAKSYFLNIKGPELLNKFVGETERHIRLIFQRAREKASEGTPVIVFFDEMDSIFRTR---GTGVSSDVETTVVPQLLSEIDGVEGLENVIVIGASNREDMIDPAILRPGRLDVKIKIERPDAEAAQDIYSKYLTEFLPVHADDLAE 466          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: MPA_MYCBO (Proteasome-associated ATPase OS=Mycobacterium bovis GN=mpa PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 8.472e-31
Identity = 78/203 (38.42%), Postives = 127/203 (62.56%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNI----------DAN-----FLKVVSSAIIDKYIGESARLIREMFGYARDH----QPCIIFMDEIDAIGGRRFSEGTSADREIQRTLM-ELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEI--------LKIHAAGIAK 527
            ++ELP ++ EL+    ++PPKGVLLYGPPG GKTL+A+A+A+++          DA+     FL +    +++K++GE+ R IR +F  AR+      P I+F DE+D+I   R   GT    +++ T++ +LL+++DG + L  V +I A+NR D++DPA+LRPGRLD KI+I  P+ ++  +I        L +HA  +A+
Sbjct:  267 AVELPFLHKELYREYSLRPPKGVLLYGPPGCGKTLIAKAVANSLAKKMAEVRGDDAHEAKSYFLNIKGPELLNKFVGETERHIRLIFQRAREKASEGTPVIVFFDEMDSIFRTR---GTGVSSDVETTVVPQLLSEIDGVEGLENVIVIGASNREDMIDPAILRPGRLDVKIKIERPDAEAAQDIYSKYLTEFLPVHADDLAE 466          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: KATL2_MOUSE (Katanin p60 ATPase-containing subunit A-like 2 OS=Mus musculus GN=Katnal2 PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 8.472e-31
Identity = 77/218 (35.32%), Postives = 130/218 (59.63%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIM-ATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEIL--------KIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 629
            ++  P+  P+LF  + + P KG+LLYGPPGTGKTLLA+A+A+     F  + +S I+ K+ G+S +L+R +F  AR H P  IF+DE++++  +R            R   ELL Q+DG  +   +  ++ A+N P  LD A+LR  RL+++I + LP++++R  ++        K HA  +  H +++Y  + +  EG++G+D++ VC EA M  +R
Sbjct:  270 AVVYPIRYPQLFTGI-LSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLVRVLFELARYHAPSTIFLDELESVMSQRGMVPGGEHEGSLRMKTELLVQMDGLARSEDLVFVLAASNLPWELDCAMLR--RLEKRILVDLPSQEARQAMIYHWLPPVSKNHA--LELHTQLEYSVLSQETEGYSGSDIKLVCREAAMRPVR 482          
The following BLAST results are available for this feature:
BLAST of DC900089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 389
Match NameE-valueIdentityDescription
SPAST_DICDI2.230e-3133.84Spastin OS=Dictyostelium discoideum GN=DDB_G028716... [more]
VPS4_YEAST2.912e-3138.57Vacuolar protein sorting-associated protein 4 OS=S... [more]
TBP6_YEAST2.912e-3134.91Probable 26S protease subunit YTA6 OS=Saccharomyce... [more]
SPAST_DROPE2.912e-3132.95Spastin OS=Drosophila persimilis GN=spas PE=3 SV=1[more]
ATD1B_DANRE2.912e-3135.54ATPase family AAA domain-containing protein 1-B OS... [more]
ATD1A_DANRE3.803e-3139.20ATPase family AAA domain-containing protein 1-A OS... [more]
SPAST_ANOGA8.472e-3131.66Spastin OS=Anopheles gambiae GN=spas PE=3 SV=5[more]
MPA_MYCTU8.472e-3138.42Proteasome-associated ATPase OS=Mycobacterium tube... [more]
MPA_MYCBO8.472e-3138.42Proteasome-associated ATPase OS=Mycobacterium bovi... [more]
KATL2_MOUSE8.472e-3135.32Katanin p60 ATPase-containing subunit A-like 2 OS=... [more]

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Properties
Property NameValue
Genbank descriptionDC900089 VSS Citrus sinensis cDNA clone VS27V05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900089 ID=DC900089; Name=DC900089; organism=Citrus sinensis; type=EST; length=899bp
AATCTATTGAGCTACCTTTGATGAATCCTGAGCTTTTCCTTAGAGTTGGA
ATTAAACCTCCCAAGGGCGTTCTTCTTTATGGGCCTCCTGGAACTGGCAA
GACATTATTAGCACGAGCAATTGCCAGTAACATAGATGCAAATTTTCTGA
AGGTTGTTTCAAGTGCCATTATTGATAAGTACATTGGGGAAAGTGCAAGG
TTGATAAGAGAGATGTTTGGATACGCACGCGATCATCAACCCTGCATCAT
TTTTATGGATGAAATTGATGCCATCGGTGGGCGCCGTTTTAGTGAAGGAA
CCAGTGCAGATCGTGAAATTCAAAGGACACTGATGGAGTTACTTAATCAG
CTTGATGGATTTGATCAGCTTGGGAAGGTTAAAATGATAATGGCCACTAA
CAGACCTGATGTCCTTGACCCTGCACTTCTTCGTCCAGGGCGACTGGATA
GGAAAATTGAGATTCCATTGCCAAATGAGCAGTCAAGAATGGAAATTCTT
AAAATTCATGCTGCTGGCATTGCTAAGCATGGCGAGATTGATTATGAGGC
TGTTGTGAAGCTTGCAGAGGGCTTTAATGGGGCTGATCTCCGAAATGTTT
GCACCGAGGCTGGAATGTCGGCAATCCGTGCTGAACGTGATTATGTCATC
CACGAAGATTTTATGAAGGCTGTCCGGAAACTGAATGAGGCAAAGAAACT
TGAATCAAGTGCTCACTACAATGCTGATTTTGGAAAAGAGTAAAAACATT
TAGGAAAAGAGCCAAGGATCTTGAGGCAGTGCGGTTATTTTTCAGATGTA
ATTGTTTTCATATTTTTGTTAAAACATCTTGCTTTAATTTGTGAAGTTAG
TGGTTCTTTGAGCGATGGAATGCTNTATATATTAAACAATCATTCACGT
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