DC900089
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: SPAST_CAEBR (Probable spastin homolog spas-1 OS=Caenorhabditis briggsae GN=spas-1 PE=3 SV=2) HSP 1 Score: 126.716 bits (317), Expect = 1.767e-28 Identity = 81/218 (37.16%), Postives = 123/218 (56.42%), Query Frame = 3 Query: 3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL-MELLNQLDGFDQL--GKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH------GEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 629 ++ LP +NP LF + +P KG+LL+GPPG GKTLLA+A+A F + +S++ K++G+S + IR +F AR+ QP IIF+DEID+I E + D E+ R + E L Q DG ++ +I ATNRP LD A+LR R ++I + LP+ ++R E++ + KH D + GF+ +DL +C EA M +R Sbjct: 284 AVILPALNPNLFSGLR-QPVKGILLFGPPGNGKTLLAKAVAGESKQMFFNISASSLTSKWVGDSEKTIRGLFQIARNGQPSIIFIDEIDSI----LCERSEKDAEVSRRMKTEFLVQFDGATSSPDDRILVIGATNRPYELDDAVLR--RFPKRIMLNLPDTEARKELI---TNTLKKHDMMDGLSSSDIRYIASNTSGFSNSDLVALCKEAAMVPVR 491
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: VPS4_DICDI (Vacuolar protein sorting-associated protein 4 OS=Dictyostelium discoideum GN=vps4 PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 2.307e-28 Identity = 72/211 (34.12%), Postives = 128/211 (60.66%), Query Frame = 3 Query: 3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRA 632 ++ P+ P++F KP KG+LLYGPPGTGK+ LA+A+A+ I + F + S I+ K++G+S +L++++F AR+ +IF+DE+D++ R + + + R I+ + +N + G D G + ++ ATN P LD A+ R R +++I I LP Q+R ++ +IH + DY+ + L EG++G+D+ ++ +A M +RA Sbjct: 150 AVIFPIKFPQMFTG-NRKPWKGILLYGPPGTGKSYLAKAVATEISSTFFSISPSDIVTKWLGDSEKLVKQLFEMAREKNNSVIFIDEVDSLCSSRNDQESESARRIKTEFLIQMNGV-GNDSDG-ILVLAATNIPWGLDLAIRR--RFEKRIYIGLPEPQARAKMFQIHIGSTPNTLVQADYKKLADLTEGYSGSDIGSLVKDAIMQPVRA 355
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: VPS4B_PONAB (Vacuolar protein sorting-associated protein 4B OS=Pongo abelii GN=VPS4B PE=2 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 2.307e-28 Identity = 76/213 (35.68%), Postives = 131/213 (61.50%), Query Frame = 3 Query: 3 SIELPLMNPELFLRVGIKPP-KGVLLYGPPGTGKTLLARAIASNID-ANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHG--EIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 629 ++ LP+ P LF G + P +G+LL+GPPGTGK+ LA+A+A+ + + F + SS ++ K++GES +L++ +F AR+++P IIF+DEID++ G R + A R I+ + + + G D G + ++ ATN P VLD A+ R R +++I IPLP +R + K+H G ++ E D+ + + +G++GAD+ + +A M +R Sbjct: 149 AVILPIKFPHLF--TGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMRGV-GVDNDG-ILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLH-LGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVR 354
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: VPS4B_MOUSE (Vacuolar protein sorting-associated protein 4B OS=Mus musculus GN=Vps4b PE=1 SV=2) HSP 1 Score: 126.331 bits (316), Expect = 2.307e-28 Identity = 74/212 (34.91%), Postives = 129/212 (60.85%), Query Frame = 3 Query: 3 SIELPLMNPELFLRVGIKPP-KGVLLYGPPGTGKTLLARAIASNID-ANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 629 ++ LP+ P LF G + P +G+LL+GPPGTGK+ LA+A+A+ + + F + SS ++ K++GES +L++ +F AR+++P IIF+DEID++ G R + A R I+ + + + G D G + ++ ATN P VLD A+ R R +++I IPLP +R + ++H E D++ + + +G++GAD+ + +A M +R Sbjct: 149 AVILPIKFPHLF--TGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGV-GVDNDG-ILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVR 354
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: VPS4B_HUMAN (Vacuolar protein sorting-associated protein 4B OS=Homo sapiens GN=VPS4B PE=1 SV=2) HSP 1 Score: 126.331 bits (316), Expect = 2.307e-28 Identity = 76/213 (35.68%), Postives = 131/213 (61.50%), Query Frame = 3 Query: 3 SIELPLMNPELFLRVGIKPP-KGVLLYGPPGTGKTLLARAIASNID-ANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHG--EIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 629 ++ LP+ P LF G + P +G+LL+GPPGTGK+ LA+A+A+ + + F + SS ++ K++GES +L++ +F AR+++P IIF+DEID++ G R + A R I+ + + + G D G + ++ ATN P VLD A+ R R +++I IPLP +R + K+H G ++ E D+ + + +G++GAD+ + +A M +R Sbjct: 149 AVILPIKFPHLF--TGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGV-GVDNDG-ILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLH-LGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVR 354
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: NSF_DICDI (Vesicle-fusing ATPase OS=Dictyostelium discoideum GN=nsfA PE=1 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 2.307e-28 Identity = 80/222 (36.04%), Postives = 116/222 (52.25%), Query Frame = 3 Query: 27 PELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSS-AIIDKYIGESARLIREMFGYARDHQPC--------IIFMDEIDAI----GGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEA----VVKLAEGFNGADLRNVCTEAGMSAIRAERD 641 P + ++G+ KG+LLYGPPGTGKTL+AR I ++ KVVS +I++KY+G+S IR +F A Q II DE+DAI G R+ G + +LL +DG + L + +I TNR D++D ALLRPGRL+ +EI LP+E R +I KIH A + +D + ++GA++ V A A + D Sbjct: 246 PAIVKKLGVNHVKGMLLYGPPGTGKTLIARQIGKMLNGREPKVVSGPSILNKYVGQSEENIRMLFRDAEIEQKAKGDDSGLHIIIFDELDAICKSRGSRQGDSGVG-----DSVVNQLLAMIDGVESLNNILVIGMTNRKDMIDEALLRPGRLEVHVEISLPDEHGREQIFKIHTAKMRDQNALDKDVNLANYAHTTRNYSGAEIEGVVKSAASYAFSRQVD 462
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: MSP1_CAEEL (Mitochondrial sorting homolog OS=Caenorhabditis elegans GN=mspn-1 PE=1 SV=2) HSP 1 Score: 126.331 bits (316), Expect = 2.307e-28 Identity = 72/195 (36.92%), Postives = 112/195 (57.44%), Query Frame = 3 Query: 51 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIM-ATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRA 632 + PP+G+LLYGPPG GKTLLA+A+A F+ + S + DK+ GES +L +F A+ QP IIF+DEID+ R S + ++ M L DGF G ++M ATNRP +D A+LR R+ + ++P+PN + R +IL + + ++ + + AEG +G+DL+ VC A ++ +A Sbjct: 114 LSPPRGILLYGPPGCGKTLLAKAVARAAGCRFINLQVSNLTDKWYGESQKLAAAVFSVAQKFQPTIIFIDEIDSFLRDRQSHDHESTAMMKAQFMTL---WDGFSSSGDQIIVMGATNRPRDVDAAILR--RMTARFQVPVPNAKQRSQILNVILRNEKINNTVNLGEIAQAAEGLSGSDLKEVCRLALLARAKA 303
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: YJNA_SCHPO (Uncharacterized AAA domain-containing protein C24B10.10c OS=Schizosaccharomyces pombe GN=SPCC24B10.10c PE=2 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 3.013e-28 Identity = 74/201 (36.82%), Postives = 111/201 (55.22%), Query Frame = 3 Query: 15 PLMNPELFLRVG--IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEA 611 PL PE+F G + PKG+LLYGPPG GKT+LA+A+A A F+ V + DK+ GES +L+ +F AR +P IIF+DEID +R A +I+ M + + L +V ++ ATNRP +D A+ R R+ + IPLPN + R +IL+++ + D+ VV G +G+ ++ VC A Sbjct: 108 PLKYPEVFDTHGGLLSCPKGLLLYGPPGCGKTMLAKALAKQSQATFINVSVGLLTDKWFGESNKLVDALFTLARKLEPTIIFIDEIDTFLRQRQRTDHEAMAQIKAEFMSMWDGL--LSGQSRVLVLGATNRPADIDEAIRR--RMPKVFSIPLPNAEQRRKILELYLKKVPLEANFDWNGVVNATAGLSGSYIKEVCRSA 304
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: SAP1_YEAST (Protein SAP1 OS=Saccharomyces cerevisiae GN=SAP1 PE=1 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 5.140e-28 Identity = 77/238 (32.35%), Postives = 134/238 (56.30%), Query Frame = 3 Query: 3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEG-TSADREIQRTLMELLNQL-----------------DGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSR-MEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHED 659 ++ P + P+LF + +P +G+LL+GPPGTGKT+LARA+A+ + F + +S++ KY+GES +L+R +F A+ P IIF+DEID+I G R +E + R I+ + + L +G + +V ++ ATN P +D A R R R+ IPLP +Q+R ++ K+ + E D++ +VK+ EG++G+D+ ++ +A M +R D ++ + Sbjct: 620 AVVYPFLRPDLFRGLR-EPVRGMLLFGPPGTGKTMLARAVATESHSTFFSISASSLTSKYLGESEKLVRALFAIAKKLSPSIIFVDEIDSIMGSRNNENENESSRRIKNEFLVQWSSLSSAAAGSNKSNTNNSDTNGDEDDTRVLVLAATNLPWSIDEAARR--RFVRRQYIPLPEDQTRHVQFKKLLSHQKHTLTESDFDELVKITEGYSGSDITSLAKDAAMGPLRDLGDKLLETE 854
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: SPAST_BRUMA (Probable spastin homolog Bm1_53365 OS=Brugia malayi GN=Bm1_53365 PE=3 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 6.713e-28 Identity = 90/266 (33.83%), Postives = 143/266 (53.76%), Query Frame = 3 Query: 3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN-FLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF--DQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE---GFNGADLRNVCTEAGMSAIR------------AERDYVIHEDF---MKAVRKLNEAKKLESSAHYNADFGK 737 ++ LP +NP LF + +P +G+LL+GPPG GKTLLARA+A + FL V ++++ K++G++ +++R +F AR+ QP IIF+DEID+I R + T R R E L Q+DG + ++ +I ATNRP+ LD A+LR R ++I I +PN +R++++ ++ LAE G++ +DL +C EA M IR E + DF MKA++ + L+ Y A G+ Sbjct: 193 TVILPTVNPSLFSGLR-QPAQGILLFGPPGNGKTLLARAVAGECGSTMFLNVSAASLTSKWVGDAEKIVRALFQIARNGQPTIIFIDEIDSILCERNEKETEVSR---RMKTEFLIQMDGMLSSKDDRLLVIGATNRPEELDSAILR--RFPKRILIDVPNAAARLKLIMSLLEKTKTSFDLGLTQRQILAEWTHGYSNSDLVALCREAAMVPIRDLSRKDIKNLVSTELRPITLRDFEIAMKAIKPSTNERMLQKLRKYAATAGQ 452 The following BLAST results are available for this feature:
BLAST of DC900089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 389
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Sequences
The
following sequences are available for this feature:
EST sequence >DC900089 ID=DC900089; Name=DC900089; organism=Citrus sinensis; type=EST; length=899bpback to top |