DC900089

Overview
NameDC900089
Unique NameDC900089
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length899
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10082 contig Csv1_Contig10082:504..1401. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: SPAST_CAEBR (Probable spastin homolog spas-1 OS=Caenorhabditis briggsae GN=spas-1 PE=3 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.767e-28
Identity = 81/218 (37.16%), Postives = 123/218 (56.42%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL-MELLNQLDGFDQL--GKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH------GEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 629
            ++ LP +NP LF  +  +P KG+LL+GPPG GKTLLA+A+A      F  + +S++  K++G+S + IR +F  AR+ QP IIF+DEID+I      E +  D E+ R +  E L Q DG       ++ +I ATNRP  LD A+LR  R  ++I + LP+ ++R E++      + KH         D   +     GF+ +DL  +C EA M  +R
Sbjct:  284 AVILPALNPNLFSGLR-QPVKGILLFGPPGNGKTLLAKAVAGESKQMFFNISASSLTSKWVGDSEKTIRGLFQIARNGQPSIIFIDEIDSI----LCERSEKDAEVSRRMKTEFLVQFDGATSSPDDRILVIGATNRPYELDDAVLR--RFPKRIMLNLPDTEARKELI---TNTLKKHDMMDGLSSSDIRYIASNTSGFSNSDLVALCKEAAMVPVR 491          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: VPS4_DICDI (Vacuolar protein sorting-associated protein 4 OS=Dictyostelium discoideum GN=vps4 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.307e-28
Identity = 72/211 (34.12%), Postives = 128/211 (60.66%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRA 632
            ++  P+  P++F     KP KG+LLYGPPGTGK+ LA+A+A+ I + F  +  S I+ K++G+S +L++++F  AR+    +IF+DE+D++   R  + + + R I+   +  +N + G D  G + ++ ATN P  LD A+ R  R +++I I LP  Q+R ++ +IH         + DY+ +  L EG++G+D+ ++  +A M  +RA
Sbjct:  150 AVIFPIKFPQMFTG-NRKPWKGILLYGPPGTGKSYLAKAVATEISSTFFSISPSDIVTKWLGDSEKLVKQLFEMAREKNNSVIFIDEVDSLCSSRNDQESESARRIKTEFLIQMNGV-GNDSDG-ILVLAATNIPWGLDLAIRR--RFEKRIYIGLPEPQARAKMFQIHIGSTPNTLVQADYKKLADLTEGYSGSDIGSLVKDAIMQPVRA 355          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: VPS4B_PONAB (Vacuolar protein sorting-associated protein 4B OS=Pongo abelii GN=VPS4B PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.307e-28
Identity = 76/213 (35.68%), Postives = 131/213 (61.50%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPP-KGVLLYGPPGTGKTLLARAIASNID-ANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHG--EIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 629
            ++ LP+  P LF   G + P +G+LL+GPPGTGK+ LA+A+A+  + + F  + SS ++ K++GES +L++ +F  AR+++P IIF+DEID++ G R    + A R I+   +  +  + G D  G + ++ ATN P VLD A+ R  R +++I IPLP   +R  + K+H  G  ++   E D+  + +  +G++GAD+  +  +A M  +R
Sbjct:  149 AVILPIKFPHLF--TGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMRGV-GVDNDG-ILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLH-LGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVR 354          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: VPS4B_MOUSE (Vacuolar protein sorting-associated protein 4B OS=Mus musculus GN=Vps4b PE=1 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 2.307e-28
Identity = 74/212 (34.91%), Postives = 129/212 (60.85%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPP-KGVLLYGPPGTGKTLLARAIASNID-ANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKH-GEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 629
            ++ LP+  P LF   G + P +G+LL+GPPGTGK+ LA+A+A+  + + F  + SS ++ K++GES +L++ +F  AR+++P IIF+DEID++ G R    + A R I+   +  +  + G D  G + ++ ATN P VLD A+ R  R +++I IPLP   +R  + ++H         E D++ + +  +G++GAD+  +  +A M  +R
Sbjct:  149 AVILPIKFPHLF--TGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGV-GVDNDG-ILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVR 354          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: VPS4B_HUMAN (Vacuolar protein sorting-associated protein 4B OS=Homo sapiens GN=VPS4B PE=1 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 2.307e-28
Identity = 76/213 (35.68%), Postives = 131/213 (61.50%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPP-KGVLLYGPPGTGKTLLARAIASNID-ANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHG--EIDYEAVVKLAEGFNGADLRNVCTEAGMSAIR 629
            ++ LP+  P LF   G + P +G+LL+GPPGTGK+ LA+A+A+  + + F  + SS ++ K++GES +L++ +F  AR+++P IIF+DEID++ G R    + A R I+   +  +  + G D  G + ++ ATN P VLD A+ R  R +++I IPLP   +R  + K+H  G  ++   E D+  + +  +G++GAD+  +  +A M  +R
Sbjct:  149 AVILPIKFPHLF--TGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGV-GVDNDG-ILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLH-LGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVR 354          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: NSF_DICDI (Vesicle-fusing ATPase OS=Dictyostelium discoideum GN=nsfA PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.307e-28
Identity = 80/222 (36.04%), Postives = 116/222 (52.25%), Query Frame = 3
Query:   27 PELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSS-AIIDKYIGESARLIREMFGYARDHQPC--------IIFMDEIDAI----GGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEA----VVKLAEGFNGADLRNVCTEAGMSAIRAERD 641
            P +  ++G+   KG+LLYGPPGTGKTL+AR I   ++    KVVS  +I++KY+G+S   IR +F  A   Q          II  DE+DAI    G R+   G          + +LL  +DG + L  + +I  TNR D++D ALLRPGRL+  +EI LP+E  R +I KIH A +     +D +            ++GA++  V   A   A   + D
Sbjct:  246 PAIVKKLGVNHVKGMLLYGPPGTGKTLIARQIGKMLNGREPKVVSGPSILNKYVGQSEENIRMLFRDAEIEQKAKGDDSGLHIIIFDELDAICKSRGSRQGDSGVG-----DSVVNQLLAMIDGVESLNNILVIGMTNRKDMIDEALLRPGRLEVHVEISLPDEHGREQIFKIHTAKMRDQNALDKDVNLANYAHTTRNYSGAEIEGVVKSAASYAFSRQVD 462          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: MSP1_CAEEL (Mitochondrial sorting homolog OS=Caenorhabditis elegans GN=mspn-1 PE=1 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 2.307e-28
Identity = 72/195 (36.92%), Postives = 112/195 (57.44%), Query Frame = 3
Query:   51 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIM-ATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRA 632
            + PP+G+LLYGPPG GKTLLA+A+A      F+ +  S + DK+ GES +L   +F  A+  QP IIF+DEID+    R S    +   ++   M L    DGF   G   ++M ATNRP  +D A+LR  R+  + ++P+PN + R +IL +       +  ++   + + AEG +G+DL+ VC  A ++  +A
Sbjct:  114 LSPPRGILLYGPPGCGKTLLAKAVARAAGCRFINLQVSNLTDKWYGESQKLAAAVFSVAQKFQPTIIFIDEIDSFLRDRQSHDHESTAMMKAQFMTL---WDGFSSSGDQIIVMGATNRPRDVDAAILR--RMTARFQVPVPNAKQRSQILNVILRNEKINNTVNLGEIAQAAEGLSGSDLKEVCRLALLARAKA 303          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: YJNA_SCHPO (Uncharacterized AAA domain-containing protein C24B10.10c OS=Schizosaccharomyces pombe GN=SPCC24B10.10c PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.013e-28
Identity = 74/201 (36.82%), Postives = 111/201 (55.22%), Query Frame = 3
Query:   15 PLMNPELFLRVG--IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEA 611
            PL  PE+F   G  +  PKG+LLYGPPG GKT+LA+A+A    A F+ V    + DK+ GES +L+  +F  AR  +P IIF+DEID    +R      A  +I+   M + + L       +V ++ ATNRP  +D A+ R  R+ +   IPLPN + R +IL+++   +      D+  VV    G +G+ ++ VC  A
Sbjct:  108 PLKYPEVFDTHGGLLSCPKGLLLYGPPGCGKTMLAKALAKQSQATFINVSVGLLTDKWFGESNKLVDALFTLARKLEPTIIFIDEIDTFLRQRQRTDHEAMAQIKAEFMSMWDGL--LSGQSRVLVLGATNRPADIDEAIRR--RMPKVFSIPLPNAEQRRKILELYLKKVPLEANFDWNGVVNATAGLSGSYIKEVCRSA 304          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: SAP1_YEAST (Protein SAP1 OS=Saccharomyces cerevisiae GN=SAP1 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.140e-28
Identity = 77/238 (32.35%), Postives = 134/238 (56.30%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEG-TSADREIQRTLMELLNQL-----------------DGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSR-MEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHED 659
            ++  P + P+LF  +  +P +G+LL+GPPGTGKT+LARA+A+   + F  + +S++  KY+GES +L+R +F  A+   P IIF+DEID+I G R +E    + R I+   +   + L                 +G +   +V ++ ATN P  +D A  R  R  R+  IPLP +Q+R ++  K+ +       E D++ +VK+ EG++G+D+ ++  +A M  +R   D ++  +
Sbjct:  620 AVVYPFLRPDLFRGLR-EPVRGMLLFGPPGTGKTMLARAVATESHSTFFSISASSLTSKYLGESEKLVRALFAIAKKLSPSIIFVDEIDSIMGSRNNENENESSRRIKNEFLVQWSSLSSAAAGSNKSNTNNSDTNGDEDDTRVLVLAATNLPWSIDEAARR--RFVRRQYIPLPEDQTRHVQFKKLLSHQKHTLTESDFDELVKITEGYSGSDITSLAKDAAMGPLRDLGDKLLETE 854          
BLAST of DC900089 vs. ExPASy Swiss-Prot
Match: SPAST_BRUMA (Probable spastin homolog Bm1_53365 OS=Brugia malayi GN=Bm1_53365 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.713e-28
Identity = 90/266 (33.83%), Postives = 143/266 (53.76%), Query Frame = 3
Query:    3 SIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDAN-FLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGF--DQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAE---GFNGADLRNVCTEAGMSAIR------------AERDYVIHEDF---MKAVRKLNEAKKLESSAHYNADFGK 737
            ++ LP +NP LF  +  +P +G+LL+GPPG GKTLLARA+A    +  FL V ++++  K++G++ +++R +F  AR+ QP IIF+DEID+I   R  + T   R   R   E L Q+DG    +  ++ +I ATNRP+ LD A+LR  R  ++I I +PN  +R++++           ++       LAE   G++ +DL  +C EA M  IR             E   +   DF   MKA++     + L+    Y A  G+
Sbjct:  193 TVILPTVNPSLFSGLR-QPAQGILLFGPPGNGKTLLARAVAGECGSTMFLNVSAASLTSKWVGDAEKIVRALFQIARNGQPTIIFIDEIDSILCERNEKETEVSR---RMKTEFLIQMDGMLSSKDDRLLVIGATNRPEELDSAILR--RFPKRILIDVPNAAARLKLIMSLLEKTKTSFDLGLTQRQILAEWTHGYSNSDLVALCREAAMVPIRDLSRKDIKNLVSTELRPITLRDFEIAMKAIKPSTNERMLQKLRKYAATAGQ 452          
The following BLAST results are available for this feature:
BLAST of DC900089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 389
Match NameE-valueIdentityDescription
SPAST_CAEBR1.767e-2837.16Probable spastin homolog spas-1 OS=Caenorhabditis ... [more]
VPS4_DICDI2.307e-2834.12Vacuolar protein sorting-associated protein 4 OS=D... [more]
VPS4B_PONAB2.307e-2835.68Vacuolar protein sorting-associated protein 4B OS=... [more]
VPS4B_MOUSE2.307e-2834.91Vacuolar protein sorting-associated protein 4B OS=... [more]
VPS4B_HUMAN2.307e-2835.68Vacuolar protein sorting-associated protein 4B OS=... [more]
NSF_DICDI2.307e-2836.04Vesicle-fusing ATPase OS=Dictyostelium discoideum ... [more]
MSP1_CAEEL2.307e-2836.92Mitochondrial sorting homolog OS=Caenorhabditis el... [more]
YJNA_SCHPO3.013e-2836.82Uncharacterized AAA domain-containing protein C24B... [more]
SAP1_YEAST5.140e-2832.35Protein SAP1 OS=Saccharomyces cerevisiae GN=SAP1 P... [more]
SPAST_BRUMA6.713e-2833.83Probable spastin homolog Bm1_53365 OS=Brugia malay... [more]

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Properties
Property NameValue
Genbank descriptionDC900089 VSS Citrus sinensis cDNA clone VS27V05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900089 ID=DC900089; Name=DC900089; organism=Citrus sinensis; type=EST; length=899bp
AATCTATTGAGCTACCTTTGATGAATCCTGAGCTTTTCCTTAGAGTTGGA
ATTAAACCTCCCAAGGGCGTTCTTCTTTATGGGCCTCCTGGAACTGGCAA
GACATTATTAGCACGAGCAATTGCCAGTAACATAGATGCAAATTTTCTGA
AGGTTGTTTCAAGTGCCATTATTGATAAGTACATTGGGGAAAGTGCAAGG
TTGATAAGAGAGATGTTTGGATACGCACGCGATCATCAACCCTGCATCAT
TTTTATGGATGAAATTGATGCCATCGGTGGGCGCCGTTTTAGTGAAGGAA
CCAGTGCAGATCGTGAAATTCAAAGGACACTGATGGAGTTACTTAATCAG
CTTGATGGATTTGATCAGCTTGGGAAGGTTAAAATGATAATGGCCACTAA
CAGACCTGATGTCCTTGACCCTGCACTTCTTCGTCCAGGGCGACTGGATA
GGAAAATTGAGATTCCATTGCCAAATGAGCAGTCAAGAATGGAAATTCTT
AAAATTCATGCTGCTGGCATTGCTAAGCATGGCGAGATTGATTATGAGGC
TGTTGTGAAGCTTGCAGAGGGCTTTAATGGGGCTGATCTCCGAAATGTTT
GCACCGAGGCTGGAATGTCGGCAATCCGTGCTGAACGTGATTATGTCATC
CACGAAGATTTTATGAAGGCTGTCCGGAAACTGAATGAGGCAAAGAAACT
TGAATCAAGTGCTCACTACAATGCTGATTTTGGAAAAGAGTAAAAACATT
TAGGAAAAGAGCCAAGGATCTTGAGGCAGTGCGGTTATTTTTCAGATGTA
ATTGTTTTCATATTTTTGTTAAAACATCTTGCTTTAATTTGTGAAGTTAG
TGGTTCTTTGAGCGATGGAATGCTNTATATATTAAACAATCATTCACGT
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