CN185912
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN185912 vs. ExPASy Swiss-Prot
Match: RS19_NANEQ (30S ribosomal protein S19P OS=Nanoarchaeum equitans GN=rps19p PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 3.635e-25 Identity = 64/133 (48.12%), Postives = 80/133 (60.15%), Query Frame = 1 Query: 136 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 534 K+F ++G L L MS +EL K+ AR RR R LK KKL K A G+ +P++TH RN II+P M+G + VYNGK + V+IKPEMIGHYL EFS + K KH PGIGAT SS + K Sbjct: 8 KEFRYKGYTLQELEQMSLEELAKIMPARQRRTLLRRLKFGWSDQQKKLFKKILLAKEGKYKKPIKTHARNTIILPFMVGVTVHVYNGKEYVPVQIKPEMIGHYLGEFSFTTKRPKHSAPGIGATRSSAHVSKK 140
BLAST of CN185912 vs. ExPASy Swiss-Prot
Match: RS19_METBU (30S ribosomal protein S19P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps19p PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 6.200e-25 Identity = 61/140 (43.57%), Postives = 85/140 (60.71%), Query Frame = 1 Query: 115 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 534 LPK++ +++FRG + L +MS ++ +L A+ RR +RG ++++ R K E VRTH RNMII PEMIG + VYNGK F ++EI PEMIGH E+S + V HG G+GAT SS+F+PLK Sbjct: 9 LPKRKG--EYTFRGKTVAQLQEMSFEDFAELLPAKERRSIRRGFSDSQKGVLQQFRDGK---------ESVRTHFRNMIIFPEMIGKNLEVYNGKEFVKIEIMPEMIGHRFGEYSPTRNRVSHGSAGVGATRSSKFVPLK 137
BLAST of CN185912 vs. ExPASy Swiss-Prot
Match: RS19_METM7 (30S ribosomal protein S19P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps19p PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 2.356e-24 Identity = 51/139 (36.69%), Postives = 86/139 (61.87%), Query Frame = 1 Query: 118 PKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 534 P++R +F ++G L+ L +M + +++ +R RR RG+ L+ K++KA+R G++P +RTH R+ +I PEMIG G+YNGK F ++++ E +G +L E + + V+HG PG+GAT S F+P+K Sbjct: 25 PRRRV--EFKYKGFTLEELQEMPIKKFMEIVPSRQRRTMLRGITPNQRKLVMKIKKARRLTNRGKEPRVIRTHCRDFVITPEMIGLTFGIYNGKEFKEIKLVEETVGRFLGEMAPTRSVVQHGSPGMGATRGSMFVPIK 161
BLAST of CN185912 vs. ExPASy Swiss-Prot
Match: RS19_METM5 (30S ribosomal protein S19P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps19p PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 5.248e-24 Identity = 51/139 (36.69%), Postives = 86/139 (61.87%), Query Frame = 1 Query: 118 PKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 534 P++R +F ++G L+ L +M + +++ +R RR RG+ K L+ K++KA+R G++ +RTH R+ +I PEMIG G+YNGK F ++++ E +G +L E + + V+HG PG+GAT S F+P+K Sbjct: 25 PRRRV--EFKYKGFTLEELQEMPIKKFMEIVPSRQRRTMARGITPKQRKLVMKIKKARRLTNRGKEARVIRTHCRDFVITPEMIGLTFGIYNGKEFKEIKLVEETVGRFLGEMAPTRAVVQHGSPGMGATRGSMFVPIK 161
BLAST of CN185912 vs. ExPASy Swiss-Prot
Match: RS19_METMP (30S ribosomal protein S19P OS=Methanococcus maripaludis GN=rps19p PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 8.953e-24 Identity = 51/139 (36.69%), Postives = 85/139 (61.15%), Query Frame = 1 Query: 118 PKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 534 P++R +F ++G L+ L +M + +++ +R RR RG+ K L+ K++KA+R G+ +RTH R+ +I PEMIG G+YNGK F ++++ E +G +L E + + V+HG PG+GAT S F+P+K Sbjct: 25 PRRRV--EFKYKGFSLEELQEMPIKKFMEIVPSRQRRTMARGITPKQRKLVMKIKKARRLTNRGKDARVIRTHCRDFVITPEMIGLTFGIYNGKEFKEIKLVEETVGRFLGEMAPTRGVVQHGSPGMGATRGSMFVPIK 161
BLAST of CN185912 vs. ExPASy Swiss-Prot
Match: RS19_METM6 (30S ribosomal protein S19P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps19p PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 8.953e-24 Identity = 52/139 (37.41%), Postives = 84/139 (60.43%), Query Frame = 1 Query: 118 PKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 534 P++R +F ++G L+ L +M + +++ +R RR RG+ L+ K++KA+R G++P +RTH R+ +I PEMIG G+YNGK F V + E +G +L E + + V+HG PG+GAT S F+P+K Sbjct: 25 PRRRV--EFRYKGFTLEELQEMPIKKFMEIVPSRQRRTMLRGITPNQRKLVMKIKKARRLTNRGKEPRVIRTHCRDFVITPEMIGLTFGIYNGKEFKDVTLVEETVGRFLGEMAPTRAVVQHGSPGMGATRGSMFVPIK 161
BLAST of CN185912 vs. ExPASy Swiss-Prot
Match: RS19_METVS (30S ribosomal protein S19P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps19p PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.994e-23 Identity = 51/139 (36.69%), Postives = 84/139 (60.43%), Query Frame = 1 Query: 118 PKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 534 P++R +F ++G L L +M + +++ AR RR RG+ L+ K++KA+R G++P +RTH R+ +I PEMIG I +Y GK F ++++ E +G +L E + + V+HG PG+GAT S F+P+K Sbjct: 24 PRRRV--EFKYKGFTLPELQEMPIKKFIEIVPARQRRTMSRGITPNQRKLVMKIKKARRLVNRGKEPRVIRTHCRDFVITPEMIGLTISIYTGKQFKEIKLVEETLGRFLGEMAPTRGIVQHGSPGMGATRGSMFVPIK 160
BLAST of CN185912 vs. ExPASy Swiss-Prot
Match: RS19_METHJ (30S ribosomal protein S19P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps19p PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.605e-23 Identity = 58/140 (41.43%), Postives = 88/140 (62.86%), Query Frame = 1 Query: 115 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 534 LP+++ ++F++ G +D L MS ++L+ + +RARR+ RG L+ +R +RTH R+MII+PEMIG I +YNGK F +VE++PE + HYL EF+++ + V HG GIGAT SS+F+PLK Sbjct: 9 LPRRK--EEFTYHGYKIDELRAMSLEDLLPVMPSRARRKVLRGWTIGEEKLLSDIRS---------NGSRIRTHQRDMIILPEMIGREIEIYNGKEFIRVELQPESVFHYLGEFALTRRRVTHGSAGIGATRSSKFVPLK 137
BLAST of CN185912 vs. ExPASy Swiss-Prot
Match: RS19_METMA (30S ribosomal protein S19P OS=Methanosarcina mazei GN=rps19p PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.688e-22 Identity = 56/140 (40.00%), Postives = 86/140 (61.43%), Query Frame = 1 Query: 115 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 534 LPK++ ++++RG + L ++S +E +L +R RR +RG ++ + ++ K+ +RTH R+MII+PEMIG I V+NGK F VE++PEMIGH EF+ + V HG G+GAT SS+F+PLK Sbjct: 9 LPKRKG--EYTYRGKTVSELQELSLEEFAELLPSRERRSIKRGFTDGQKKVLHEFKEGKK----------IRTHHRDMIILPEMIGIAIEVHNGKEFVNVELQPEMIGHRFGEFAPTRSRVNHGSAGVGATRSSKFVPLK 136
BLAST of CN185912 vs. ExPASy Swiss-Prot
Match: RS19_METAC (30S ribosomal protein S19P OS=Methanosarcina acetivorans GN=rps19p PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 4.912e-22 Identity = 53/140 (37.86%), Postives = 86/140 (61.43%), Query Frame = 1 Query: 115 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 534 LPK++ ++++RG + L ++S +E +L +R RR +RG ++ + ++ K+ +RTH R+MII+PEMIG I ++NGK F V+++PEM+GH EF+ + V HG G+GAT SS+F+PLK Sbjct: 9 LPKRKG--EYTYRGKTVSELQELSLEEFAELLPSRERRSLKRGFTDGQKKVLHEFKEGKK----------IRTHHRDMIILPEMIGKTIEIHNGKGFVSVDLQPEMVGHRFGEFAPTRSRVSHGSAGVGATRSSKFVPLK 136 The following BLAST results are available for this feature:
BLAST of CN185912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185912 ID=CN185912; Name=CN185912; organism=Citrus sinensis; type=EST; length=714bpback to top |