CN185911

Overview
NameCN185911
Unique NameCN185911
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185911_ssr665 microsatellite CN185911_ssr665:665..676. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7914 contig Csv1_Contig7914:7..780. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN185911 vs. ExPASy Swiss-Prot
Match: RS15_PONAB (40S ribosomal protein S15 OS=Pongo abelii GN=RPS15 PE=2 SV=3)

HSP 1 Score: 229.565 bits (584), Expect = 1.519e-59
Identity = 108/138 (78.26%), Postives = 128/138 (92.75%), Query Frame = -1 
Query:  241 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 654
            KKRTF+KF++RGVDLD LLDMS ++L++L+SAR RRR  RGL+RK  +L+K+LRKAK+EAPP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:    8 KKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145
[Close]
BLAST of CN185911 vs. ExPASy Swiss-Prot
Match: RS15_PIG (40S ribosomal protein S15 OS=Sus scrofa GN=RPS15 PE=2 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 1.519e-59
Identity = 108/138 (78.26%), Postives = 128/138 (92.75%), Query Frame = -1 
Query:  241 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 654
            KKRTF+KF++RGVDLD LLDMS ++L++L+SAR RRR  RGL+RK  +L+K+LRKAK+EAPP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:    8 KKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145
[Close]
BLAST of CN185911 vs. ExPASy Swiss-Prot
Match: RS15_MOUSE (40S ribosomal protein S15 OS=Mus musculus GN=Rps15 PE=2 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 1.519e-59
Identity = 108/138 (78.26%), Postives = 128/138 (92.75%), Query Frame = -1 
Query:  241 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 654
            KKRTF+KF++RGVDLD LLDMS ++L++L+SAR RRR  RGL+RK  +L+K+LRKAK+EAPP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:    8 KKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145
[Close]
BLAST of CN185911 vs. ExPASy Swiss-Prot
Match: RS15_MESAU (40S ribosomal protein S15 OS=Mesocricetus auratus GN=RPS15 PE=2 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 1.519e-59
Identity = 108/138 (78.26%), Postives = 128/138 (92.75%), Query Frame = -1 
Query:  241 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 654
            KKRTF+KF++RGVDLD LLDMS ++L++L+SAR RRR  RGL+RK  +L+K+LRKAK+EAPP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:    8 KKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145
[Close]
BLAST of CN185911 vs. ExPASy Swiss-Prot
Match: RS15_HUMAN (40S ribosomal protein S15 OS=Homo sapiens GN=RPS15 PE=1 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 1.519e-59
Identity = 108/138 (78.26%), Postives = 128/138 (92.75%), Query Frame = -1 
Query:  241 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 654
            KKRTF+KF++RGVDLD LLDMS ++L++L+SAR RRR  RGL+RK  +L+K+LRKAK+EAPP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:    8 KKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145
[Close]
BLAST of CN185911 vs. ExPASy Swiss-Prot
Match: RS15_CHICK (40S ribosomal protein S15 OS=Gallus gallus GN=RPS15 PE=2 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 1.519e-59
Identity = 108/138 (78.26%), Postives = 128/138 (92.75%), Query Frame = -1 
Query:  241 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 654
            KKRTF+KF++RGVDLD LLDMS ++L++L+SAR RRR  RGL+RK  +L+K+LRKAK+EAPP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:    8 KKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145
[Close]
BLAST of CN185911 vs. ExPASy Swiss-Prot
Match: RS15_BOVIN (40S ribosomal protein S15 OS=Bos taurus GN=RPS15 PE=2 SV=3)

HSP 1 Score: 228.409 bits (581), Expect = 3.383e-59
Identity = 107/138 (77.54%), Postives = 128/138 (92.75%), Query Frame = -1 
Query:  241 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 654
            KKRTF+KF++RGVDLD LLDMS ++L++L+SAR RRR  RGL+RK  +L+K+LRKAK++APP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:    8 KKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKDAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145
[Close]
BLAST of CN185911 vs. ExPASy Swiss-Prot
Match: RS15_XENLA (40S ribosomal protein S15 OS=Xenopus laevis GN=rps15 PE=2 SV=3)

HSP 1 Score: 225.328 bits (573), Expect = 2.864e-58
Identity = 105/138 (76.09%), Postives = 126/138 (91.30%), Query Frame = -1 
Query:  241 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 654
            KKRTFKKF++RGVDLD LLDMS +++++L+ AR RRR  RGL+RK  +L+K+LRKAK+EAPP EKPE ++THLR+MII+PEM+GS++GVYNGK FNQVEIKPEMIGHYL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:    8 KKRTFKKFTYRGVDLDQLLDMSYEQVMQLYCARQRRRLNRGLRRKQNSLLKRLRKAKKEAPPMEKPEVIKTHLRDMIILPEMVGSMVGVYNGKAFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145
[Close]
BLAST of CN185911 vs. ExPASy Swiss-Prot
Match: RS15_XIPMA (40S ribosomal protein S15 OS=Xiphophorus maculatus GN=rps15 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.088e-57
Identity = 104/140 (74.29%), Postives = 126/140 (90.00%), Query Frame = -1 
Query:  241 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 660
            + KKRTF+KF++RGVDLD LLDMS ++L++L+ AR RRR  RGL+RK  +L+K+L KAK+EAPP EKPE V+THLR+M+I+PEM+GS++GVYNGKTFNQVEIKPEM GHYL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:    6 IKKKRTFRKFTYRGVDLDQLLDMSYEQLMQLYCARQRRRLNRGLRRKHQSLLKRLPKAKKEAPPMEKPEVVKTHLRDMVILPEMVGSMVGVYNGKTFNQVEIKPEMCGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145
[Close]
BLAST of CN185911 vs. ExPASy Swiss-Prot
Match: RS15B_SCHPO (40S ribosomal protein S15-B OS=Schizosaccharomyces pombe GN=rps15b PE=1 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.774e-53
Identity = 100/140 (71.43%), Postives = 117/140 (83.57%), Query Frame = -1 
Query:  241 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 660
            L KKRTF+ F++RGV+L+ LLD+S ++LV LF ARARRR  RGL       I+KLRKAK EAP  EKP  V+THLRNMII+PEM+GS++G+YNGK FNQVEI+PEMIGHYL EFSI+YKP KHGRPGIGATHSSRFIPLK
Sbjct:   15 LRKKRTFRTFAYRGVELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKSEAPLNEKPATVKTHLRNMIILPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKPTKHGRPGIGATHSSRFIPLK 154
The following BLAST results are available for this feature:
BLAST of CN185911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS15_PONAB1.519e-5978.2640S ribosomal protein S15 OS=Pongo abelii GN=RPS15... [more]
RS15_PIG1.519e-5978.2640S ribosomal protein S15 OS=Sus scrofa GN=RPS15 P... [more]
RS15_MOUSE1.519e-5978.2640S ribosomal protein S15 OS=Mus musculus GN=Rps15... [more]
RS15_MESAU1.519e-5978.2640S ribosomal protein S15 OS=Mesocricetus auratus ... [more]
RS15_HUMAN1.519e-5978.2640S ribosomal protein S15 OS=Homo sapiens GN=RPS15... [more]
RS15_CHICK1.519e-5978.2640S ribosomal protein S15 OS=Gallus gallus GN=RPS1... [more]
RS15_BOVIN3.383e-5977.5440S ribosomal protein S15 OS=Bos taurus GN=RPS15 P... [more]
RS15_XENLA2.864e-5876.0940S ribosomal protein S15 OS=Xenopus laevis GN=rps... [more]
RS15_XIPMA1.088e-5774.2940S ribosomal protein S15 OS=Xiphophorus maculatus... [more]
RS15B_SCHPO2.774e-5371.4340S ribosomal protein S15-B OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002A21_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185911 ID=CN185911; Name=CN185911; organism=Citrus sinensis; type=EST; length=774bp
TTTTTTTTTTTAGGAAACAAACACAACAGCTTTTGACTGACATAAAAATA
ACCCTTTATCCAAGCCACATAACACCTCTTTAAACTACACATCACTTCCA
TTATCTAGATTAACAACTGAAACGCTAGTATTTAGTCCAACAACAAAAAA
AAAAAAAGTAACCACAAAAAATTTGATCAACTTCGATGTTTTCTGAAAAT
AACAATAAGCTAAATATCCAGATATCCAGCATACATCTCACTTAAGAGGA
ATGAACCTTGAGGAATGGGTAGCACCAATACCAGGTCTACCATGCTTCAC
AGGCTTGTATGAGATAGAGAACTCAGCCAGGTAATGCCCAATCATTTCCG
GCTTGATTTCAACCTGATTAAAGGTCTTGCCATTGTACACTCCAATAATG
CTTCCAATCATTTCAGGAACAATGATCATGTTTCGCAAATGGGTGCGAAC
TGGTTCGGGCTTCTCACCAGGTGGAGCCTCCCTTTTCGCCTTGCGAAGCT
TCTTGATCAAAGCCATGGGCTTCCTCTTTAAACCCCTCTGAAACCTTCTG
CGCGCACGTGCACTGAAGAGCTTGACGAGCTCATCATTGGACATATCAAG
AAGAGCGTCCAAATCCACGCCTCTGAAACTGAACTTCTTGAACGTTCTCT
TCTTCGGCAGTCCTGCCGCCGCCGCCACCGCAACATCAGCATCGCCATCC
GCCATGGTTAGAGCTGGGACTGGTGAGATAAACAACTGCGAGTGTGAAGA
GAGGCTCCCGCTGGATCTGATCCT
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