CN185911

Overview
NameCN185911
Unique NameCN185911
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185911_ssr665 microsatellite CN185911_ssr665:665..676. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7914 contig Csv1_Contig7914:7..780. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185911 vs. ExPASy Swiss-Prot
Match: RS15A_SCHPO (40S ribosomal protein S15-A OS=Schizosaccharomyces pombe GN=rps15a PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 8.071e-53
Identity = 99/140 (70.71%), Postives = 117/140 (83.57%), Query Frame = -1
Query:  241 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 660
            L KKR+F+ F++RGV+L+ LLD+S ++LV LF ARARRR  RGL       I+KLRKAK EAP  EKP  V+THLRNMII+PEM+GS++G+YNGK FNQVEI+PEMIGHYL EFSI+YKP KHGRPGIGATHSSRFIPLK
Sbjct:   14 LRKKRSFRTFAYRGVELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKTEAPLNEKPATVKTHLRNMIILPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKPTKHGRPGIGATHSSRFIPLK 153          
BLAST of CN185911 vs. ExPASy Swiss-Prot
Match: RS15_CAEEL (40S ribosomal protein S15 OS=Caenorhabditis elegans GN=rps-15 PE=1 SV=3)

HSP 1 Score: 205.682 bits (522), Expect = 2.348e-52
Identity = 99/140 (70.71%), Postives = 115/140 (82.14%), Query Frame = -1
Query:  241 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 660
            L KKRTF+KF +RGVDLD LLDMS ++  KL   R RRR  RGLKRK +ALI K++KAK+ A   EKP  V+THLR+MII+PE++G +IG+YNGK FNQ EIKPEMIG YL EF+ISYKPVKHGRPGIGATHSSRFIPLK
Sbjct:   12 LKKKRTFRKFMYRGVDLDQLLDMSREQFTKLLPCRMRRRLDRGLKRKHLALIAKVQKAKKAAGVLEKPATVKTHLRDMIILPELVGGVIGIYNGKVFNQTEIKPEMIGFYLGEFAISYKPVKHGRPGIGATHSSRFIPLK 151          
BLAST of CN185911 vs. ExPASy Swiss-Prot
Match: RS15_YEAST (40S ribosomal protein S15 OS=Saccharomyces cerevisiae GN=RPS15 PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.742e-47
Identity = 92/138 (66.67%), Postives = 108/138 (78.26%), Query Frame = -1
Query:  241 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 654
            KKR FK  S+RGVDL+ LL+MS ++ VKL  AR RRRF RG+  KP   +KKLR AK  AP  EKP PVRTH+RNMIIVPEMIGS++G+YNGK FNQVEI+PEM+GHYL EFSI+Y PV+HGR G     +SRFIPLK
Sbjct:    8 KKRVFKTHSYRGVDLEKLLEMSTEDFVKLAPARVRRRFARGMTSKPAGFMKKLRAAKLAAPENEKPAPVRTHMRNMIIVPEMIGSVVGIYNGKAFNQVEIRPEMLGHYLGEFSITYTPVRHGRAG---ATTSRFIPLK 142          
BLAST of CN185911 vs. ExPASy Swiss-Prot
Match: RS156_ARATH (40S ribosomal protein S15-6 OS=Arabidopsis thaliana GN=RPS15F PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.284e-46
Identity = 96/144 (66.67%), Postives = 115/144 (79.86%), Query Frame = -1
Query:  241 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEK--PEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGA----THSSRFIPLK 654
            KKRTFKKFSFRG ++DALL MSN +L KLF+AR RRRF RGLK++P+ LIKKLR+AK+EA    K  PE V+THLRNMIIVPEMIGS++GV+NGK FN++ IKPEMIGHYLAEFS++ K V H RP I        S+RFIPL+
Sbjct:   17 KKRTFKKFSFRGFNVDALLKMSNVDLAKLFNARVRRRFYRGLKKQPLILIKKLRRAKKEASDENKMKPEVVKTHLRNMIIVPEMIGSVVGVHNGKKFNEIVIKPEMIGHYLAEFSMTCKKVNHHRPRICGCCCFRRSTRFIPLR 160          
BLAST of CN185911 vs. ExPASy Swiss-Prot
Match: RS15_DICDI (40S ribosomal protein S15 OS=Dictyostelium discoideum GN=rps15 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.057e-44
Identity = 87/139 (62.59%), Postives = 107/139 (76.98%), Query Frame = -1
Query:  241 KKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPP-GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 654
            KKRTFKKF++ GV L++LLD+  ++L+ L   RARR+ +R    K +  +KK R +K      GEKP  V+TH RN++IVPEMIGS+IG+YNGK FNQVE+KPEMIGHY  EFS+SYK V HGRPGIGATHSSRFIPLK
Sbjct:    6 KKRTFKKFTYSGVALESLLDLKEEQLISLLRCRARRKLRRETPIKHVNFLKKCRASKAAVTQVGEKPALVKTHARNILIVPEMIGSVIGIYNGKVFNQVEVKPEMIGHYTGEFSLSYKSVNHGRPGIGATHSSRFIPLK 144          
BLAST of CN185911 vs. ExPASy Swiss-Prot
Match: RS15_NAEGR (40S ribosomal protein S15 (Fragment) OS=Naegleria gruberi GN=RPS15 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.164e-33
Identity = 67/118 (56.78%), Postives = 89/118 (75.42%), Query Frame = -1
Query:  241 MSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 594
            M NDEL  LF++  RR   +G+ +K   LI+K +K +  AP GEKP+ V+THLR+MII+P MIG +IGVY GK +  VEIKPEM+G  L++FS++Y+PVKHG+P IGAT SS F+PLK
Sbjct:    3 MENDELKNLFTSALRRIIGKGISKKYKTLIEKAQKKRDTAPYGEKPDAVKTHLRDMIILPSMIGCVIGVYQGKDYVSVEIKPEMVGMKLSDFSLTYRPVKHGKPSIGATSSSGFVPLK 120          
BLAST of CN185911 vs. ExPASy Swiss-Prot
Match: RS19_THEGJ (30S ribosomal protein S19P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps19p PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.582e-32
Identity = 69/133 (51.88%), Postives = 95/133 (71.43%), Query Frame = -1
Query:  241 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 639
            K+F +RG  LD LL+MS +E  KL  AR RR  +RGL  +   L++K+R AK+    G+  +P+RTH R+MI++PEM+G  I V+NGK F  +EIKPEMIGHYL EF+++ K V+HG PG+GAT SS F+ +K
Sbjct:    5 KEFRYRGYTLDELLNMSLEEFAKLLPARQRRSLKRGLSPEQKKLLRKIRLAKK----GKYNKPIRTHSRDMIVLPEMVGITIHVHNGKEFVPIEIKPEMIGHYLGEFALTRKIVQHGSPGVGATRSSMFVAVK 133          
BLAST of CN185911 vs. ExPASy Swiss-Prot
Match: RS19_PYRFU (30S ribosomal protein S19P OS=Pyrococcus furiosus GN=rps19p PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.582e-32
Identity = 70/133 (52.63%), Postives = 96/133 (72.18%), Query Frame = -1
Query:  241 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 639
            K+F +RG  L+ L++MS +EL +LF AR RR  +RGL  +   L++K+R AK+    G+  +P+RTH R+MII+PEM+G  I V+NGK F  VEIKPEMIGHYL EF+ + K V+HG PG+GAT SS F+ +K
Sbjct:    4 KEFRYRGYTLEQLMNMSLEELARLFPARQRRSLKRGLTPEQKKLLRKIRLAKK----GKYKKPIRTHCRDMIILPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKKVEHGAPGVGATRSSMFVAVK 132          
BLAST of CN185911 vs. ExPASy Swiss-Prot
Match: RS19_PYRKO (30S ribosomal protein S19P OS=Pyrococcus kodakaraensis GN=rps19p PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.604e-32
Identity = 69/133 (51.88%), Postives = 94/133 (70.68%), Query Frame = -1
Query:  241 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 639
            K+F +RG  LD LL+MS +E  KL  +R RR  +RGL  +   L++K+R AK+    G+  +P+RTH R+MI++PEM+G  I VYNGK F  VEIK EMIGHYL EF+++ K V+HG PG+GAT SS F+ +K
Sbjct:    5 KEFRYRGYTLDELLNMSLEEFAKLLPSRQRRSLKRGLSPEQKKLLRKIRLAKK----GKYNKPIRTHSRDMIVLPEMVGMTIHVYNGKEFVPVEIKEEMIGHYLGEFAMTRKVVQHGSPGVGATRSSMFVAVK 133          
BLAST of CN185911 vs. ExPASy Swiss-Prot
Match: RS19_PYRAB (30S ribosomal protein S19P OS=Pyrococcus abyssi GN=rps19p PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.013e-32
Identity = 70/133 (52.63%), Postives = 95/133 (71.43%), Query Frame = -1
Query:  241 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 639
            K+F +RG  L+ L++MS +EL KL  AR RR  +RGL  +   L++K+R AK+    G+  +P+RTH R+MI++PEM+G  I V+NGK F  VEIKPEMIGHYL EF+ + K V+HG PGIGAT SS F+ +K
Sbjct:    4 KEFRYRGYTLEQLMNMSLEELAKLLPARQRRSLKRGLTPEQKKLLRKIRLAKK----GKYNKPIRTHCRDMIVLPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKRVQHGAPGIGATRSSMFVAVK 132          
The following BLAST results are available for this feature:
BLAST of CN185911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS15A_SCHPO8.071e-5370.7140S ribosomal protein S15-A OS=Schizosaccharomyces... [more]
RS15_CAEEL2.348e-5270.7140S ribosomal protein S15 OS=Caenorhabditis elegan... [more]
RS15_YEAST1.742e-4766.6740S ribosomal protein S15 OS=Saccharomyces cerevis... [more]
RS156_ARATH3.284e-4666.6740S ribosomal protein S15-6 OS=Arabidopsis thalian... [more]
RS15_DICDI1.057e-4462.5940S ribosomal protein S15 OS=Dictyostelium discoid... [more]
RS15_NAEGR4.164e-3356.7840S ribosomal protein S15 (Fragment) OS=Naegleria ... [more]
RS19_THEGJ1.582e-3251.8830S ribosomal protein S19P OS=Thermococcus gammato... [more]
RS19_PYRFU1.582e-3252.6330S ribosomal protein S19P OS=Pyrococcus furiosus ... [more]
RS19_PYRKO4.604e-3251.8830S ribosomal protein S19P OS=Pyrococcus kodakarae... [more]
RS19_PYRAB6.013e-3252.6330S ribosomal protein S19P OS=Pyrococcus abyssi GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002A21_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185911 ID=CN185911; Name=CN185911; organism=Citrus sinensis; type=EST; length=774bp
TTTTTTTTTTTAGGAAACAAACACAACAGCTTTTGACTGACATAAAAATA
ACCCTTTATCCAAGCCACATAACACCTCTTTAAACTACACATCACTTCCA
TTATCTAGATTAACAACTGAAACGCTAGTATTTAGTCCAACAACAAAAAA
AAAAAAAGTAACCACAAAAAATTTGATCAACTTCGATGTTTTCTGAAAAT
AACAATAAGCTAAATATCCAGATATCCAGCATACATCTCACTTAAGAGGA
ATGAACCTTGAGGAATGGGTAGCACCAATACCAGGTCTACCATGCTTCAC
AGGCTTGTATGAGATAGAGAACTCAGCCAGGTAATGCCCAATCATTTCCG
GCTTGATTTCAACCTGATTAAAGGTCTTGCCATTGTACACTCCAATAATG
CTTCCAATCATTTCAGGAACAATGATCATGTTTCGCAAATGGGTGCGAAC
TGGTTCGGGCTTCTCACCAGGTGGAGCCTCCCTTTTCGCCTTGCGAAGCT
TCTTGATCAAAGCCATGGGCTTCCTCTTTAAACCCCTCTGAAACCTTCTG
CGCGCACGTGCACTGAAGAGCTTGACGAGCTCATCATTGGACATATCAAG
AAGAGCGTCCAAATCCACGCCTCTGAAACTGAACTTCTTGAACGTTCTCT
TCTTCGGCAGTCCTGCCGCCGCCGCCACCGCAACATCAGCATCGCCATCC
GCCATGGTTAGAGCTGGGACTGGTGAGATAAACAACTGCGAGTGTGAAGA
GAGGCTCCCGCTGGATCTGATCCT
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