CN185910

Overview
NameCN185910
Unique NameCN185910
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length744
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7124 contig Csv1_Contig7124:8..751. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN185910 vs. ExPASy Swiss-Prot
Match: EF1A2_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare GN=BLT63 PE=1 SV=1)

HSP 1 Score: 439.884 bits (1130), Expect = 6.962e-123
Identity = 214/224 (95.54%), Postives = 219/224 (97.77%), Query Frame = 1 
Query:   73 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNIN 744
            MGKEK HI+IVVIGHVDSGKSTTTGHLIYKLGGIDKRVIE FEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKY CTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVK MICCCNKMDATTPKYSK+RYDEIVKEVSSYLKKVGYNP+KVPFVPISGFEGDNMIERS+NLDWYKGPTLL+ALD IN
Sbjct:    1 MGKEKIHISIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIESFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYSCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKHMICCCNKMDATTPKYSKSRYDEIVKEVSSYLKKVGYNPDKVPFVPISGFEGDNMIERSSNLDWYKGPTLLEALDQIN 224
[Close]
BLAST of CN185910 vs. ExPASy Swiss-Prot
Match: EF1A1_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 439.499 bits (1129), Expect = 9.092e-123
Identity = 214/224 (95.54%), Postives = 220/224 (98.21%), Query Frame = 1 
Query:   73 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNIN 744
            MGKEK HI+IVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKY CTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG F+AGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK+RYDEIVKEVSSYLKKVGYNP+KVPFVPISGFEGDNMIERS+NLDWYKGPTLL+ALD IN
Sbjct:    1 MGKEKIHISIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYSCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGVFQAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKSRYDEIVKEVSSYLKKVGYNPDKVPFVPISGFEGDNMIERSSNLDWYKGPTLLEALDQIN 224
[Close]
BLAST of CN185910 vs. ExPASy Swiss-Prot
Match: EF1A2_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 439.113 bits (1128), Expect = 1.187e-122
Identity = 211/224 (94.20%), Postives = 221/224 (98.66%), Query Frame = 1 
Query:   73 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNIN 744
            MGKEK HI+IVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK+R++EIVKEVSSYLKKVGYNP+K+ F+PISGFEGDNMI+RSTNLDWYKGPTLL+ALD I+
Sbjct:    1 MGKEKIHISIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKSRFEEIVKEVSSYLKKVGYNPDKIAFIPISGFEGDNMIDRSTNLDWYKGPTLLEALDQIS 224
[Close]
BLAST of CN185910 vs. ExPASy Swiss-Prot
Match: EF1A_PEA (Elongation factor 1-alpha OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 433.335 bits (1113), Expect = 6.516e-121
Identity = 211/224 (94.20%), Postives = 218/224 (97.32%), Query Frame = 1 
Query:   73 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNIN 744
            MGKEK HINIVVIGHVDSGKSTTT H+IYKLGGIDKRVIERFEKEA EMNKRSFKYAW+LDKLKAERERGITIDIAL KFETTKYY TV+DAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK RY+EIVKEVSSYLK+VGYNP+K+PFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNIN
Sbjct:    1 MGKEKVHINIVVIGHVDSGKSTTTVHVIYKLGGIDKRVIERFEKEADEMNKRSFKYAWLLDKLKAERERGITIDIALLKFETTKYYSTVMDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKGRYEEIVKEVSSYLKEVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNIN 224
[Close]
BLAST of CN185910 vs. ExPASy Swiss-Prot
Match: EF1A_DICDI (Elongation factor 1-alpha OS=Dictyostelium discoideum GN=eef1a1 PE=1 SV=2)

HSP 1 Score: 381.333 bits (978), Expect = 2.938e-105
Identity = 183/223 (82.06%), Postives = 205/223 (91.93%), Query Frame = 1 
Query:   73 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNI 741
            MGKEKTHINIVVIGHVD+GKSTTTGHLIYK GGIDKRVIE++EKEA+EM K+SFKYAWV+DKLKAERERGITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVL+I S TG FEAGI+K+GQTREHALLA+TLGVKQMI   NKMD  +  YS+ARYDEIVKEVSS++KK+GYNPEKV FVPISG+ GDNM+ERS  ++WYKGPTLL+ALD I
Sbjct:    1 MGKEKTHINIVVIGHVDAGKSTTTGHLIYKCGGIDKRVIEKYEKEASEMGKQSFKYAWVMDKLKAERERGITIDIALWKFETSKYYFTIIDAPGHRDFIKNMITGTSQADCAVLVIASPTGEFEAGIAKNGQTREHALLAYTLGVKQMIVAINKMDEKSTNYSQARYDEIVKEVSSFIKKIGYNPEKVAFVPISGWNGDNMLERSDKMEWYKGPTLLEALDAI 223
[Close]
BLAST of CN185910 vs. ExPASy Swiss-Prot
Match: EF1A_EUGGR (Elongation factor 1-alpha OS=Euglena gracilis GN=TEF PE=2 SV=1)

HSP 1 Score: 371.703 bits (953), Expect = 2.328e-102
Identity = 183/223 (82.06%), Postives = 197/223 (88.34%), Query Frame = 1 
Query:   73 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNI 741
            MGKEK HI++VVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA+EM K SFKYAWVLDKLKAERER ITIDIALWKFET K   T+IDAPGHRDFIKNMITGTSQAD AVL+IDSTTGGFEAGISKDGQTREHALLA+TLGVKQMI   NK D  T KYS+ARY+EI KEVS YLKKVGYNPEKVPF+PISG+ GDNMIE S N+ WYKG TL+ ALDN+
Sbjct:    1 MGKEKVHISLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEASEMGKGSFKYAWVLDKLKAERERCITIDIALWKFETAKSVFTIIDAPGHRDFIKNMITGTSQADAAVLVIDSTTGGFEAGISKDGQTREHALLAYTLGVKQMIVATNKFDDKTVKYSQARYEEIKKEVSGYLKKVGYNPEKVPFIPISGWNGDNMIEASENMGWYKGLTLIGALDNL 223
[Close]
BLAST of CN185910 vs. ExPASy Swiss-Prot
Match: EF1A2_RAT (Elongation factor 1-alpha 2 OS=Rattus norvegicus GN=Eef1a2 PE=2 SV=1)

HSP 1 Score: 364.77 bits (935), Expect = 2.846e-100
Identity = 181/235 (77.02%), Postives = 200/235 (85.11%), Query Frame = 1 
Query:   73 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYK------------GPTLLDALDNI 741
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAEM K SFKYAWVLDKLKAERERGITIDI+LWKFETTKYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P YS+ RYDEIVKEVS+Y+KK+GYNP  VPFVPISG+ GDNM+E S N+ W+K            G +LL+ALD I
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETTKYYITIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPAYSEKRYDEIVKEVSAYIKKIGYNPATVPFVPISGWHGDNMLEPSPNMPWFKGWKVERKEGNASGVSLLEALDTI 235
[Close]
BLAST of CN185910 vs. ExPASy Swiss-Prot
Match: EF1A2_RABIT (Elongation factor 1-alpha 2 OS=Oryctolagus cuniculus GN=EEF1A2 PE=1 SV=1)

HSP 1 Score: 364.77 bits (935), Expect = 2.846e-100
Identity = 181/235 (77.02%), Postives = 200/235 (85.11%), Query Frame = 1 
Query:   73 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYK------------GPTLLDALDNI 741
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAEM K SFKYAWVLDKLKAERERGITIDI+LWKFETTKYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P YS+ RYDEIVKEVS+Y+KK+GYNP  VPFVPISG+ GDNM+E S N+ W+K            G +LL+ALD I
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETTKYYITIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPAYSEKRYDEIVKEVSAYIKKIGYNPATVPFVPISGWHGDNMLEPSPNMPWFKGWKVERKEGNASGVSLLEALDTI 235
[Close]
BLAST of CN185910 vs. ExPASy Swiss-Prot
Match: EF1A2_MOUSE (Elongation factor 1-alpha 2 OS=Mus musculus GN=Eef1a2 PE=1 SV=1)

HSP 1 Score: 364.77 bits (935), Expect = 2.846e-100
Identity = 181/235 (77.02%), Postives = 200/235 (85.11%), Query Frame = 1 
Query:   73 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYK------------GPTLLDALDNI 741
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAEM K SFKYAWVLDKLKAERERGITIDI+LWKFETTKYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P YS+ RYDEIVKEVS+Y+KK+GYNP  VPFVPISG+ GDNM+E S N+ W+K            G +LL+ALD I
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETTKYYITIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPAYSEKRYDEIVKEVSAYIKKIGYNPATVPFVPISGWHGDNMLEPSPNMPWFKGWKVERKEGNASGVSLLEALDTI 235
[Close]
BLAST of CN185910 vs. ExPASy Swiss-Prot
Match: EF1A2_HUMAN (Elongation factor 1-alpha 2 OS=Homo sapiens GN=EEF1A2 PE=1 SV=1)

HSP 1 Score: 364.77 bits (935), Expect = 2.846e-100
Identity = 181/235 (77.02%), Postives = 200/235 (85.11%), Query Frame = 1 
Query:   73 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYK------------GPTLLDALDNI 741
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAEM K SFKYAWVLDKLKAERERGITIDI+LWKFETTKYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P YS+ RYDEIVKEVS+Y+KK+GYNP  VPFVPISG+ GDNM+E S N+ W+K            G +LL+ALD I
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETTKYYITIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPAYSEKRYDEIVKEVSAYIKKIGYNPATVPFVPISGWHGDNMLEPSPNMPWFKGWKVERKEGNASGVSLLEALDTI 235
The following BLAST results are available for this feature:
BLAST of CN185910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A2_HORVU6.962e-12395.54Elongation factor 1-alpha OS=Hordeum vulgare GN=BL... [more]
EF1A1_HORVU9.092e-12395.54Elongation factor 1-alpha OS=Hordeum vulgare PE=1 ... [more]
EF1A2_DAUCA1.187e-12294.20Elongation factor 1-alpha OS=Daucus carota PE=2 SV... [more]
EF1A_PEA6.516e-12194.20Elongation factor 1-alpha OS=Pisum sativum PE=2 SV... [more]
EF1A_DICDI2.938e-10582.06Elongation factor 1-alpha OS=Dictyostelium discoid... [more]
EF1A_EUGGR2.328e-10282.06Elongation factor 1-alpha OS=Euglena gracilis GN=T... [more]
EF1A2_RAT2.846e-10077.02Elongation factor 1-alpha 2 OS=Rattus norvegicus G... [more]
EF1A2_RABIT2.846e-10077.02Elongation factor 1-alpha 2 OS=Oryctolagus cunicul... [more]
EF1A2_MOUSE2.846e-10077.02Elongation factor 1-alpha 2 OS=Mus musculus GN=Eef... [more]
EF1A2_HUMAN2.846e-10077.02Elongation factor 1-alpha 2 OS=Homo sapiens GN=EEF... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002A20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185910 ID=CN185910; Name=CN185910; organism=Citrus sinensis; type=EST; length=744bp
AGGCCTCTTTTCTTGCTTGCTCTGCGGCTAGGTTTCAACTGTCTCTTCGA
AGTTTCAGTTAATTTAACAGCCATGGGTAAGGAGAAGACTCACATCAACA
TTGTGGTGATTGGCCATGTCGACTCTGGAAAGTCAACCACCACCGGACAC
TTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGGTTCGA
GAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTATGCCTGGGTGC
TCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGATATTGCC
TTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTCATTGATGCTCC
TGGACATCGTGACTTTATCAAGAACATGATTACCGGTACCTCACAGGCTG
ACTGTGCCGTCCTTATCATTGACTCCACCACCGGTGGTTTTGAAGCTGGT
ATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTTGCTTTCACCCT
TGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGACGCCACCACCC
CCAAGTACTCAAAGGCTAGGTACGATGAAATTGTGAAGGAGGTCTCTTCC
TACCTGAAGAAGGTTGGATACAACCCCGAGAAAGTCCCATTCGTGCCCAT
CTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCTACCAACCTTGACT
GGTACAAGGGTCCAACCCTGCTGGATGCTCTTGACAATATCAAT
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