CN185908

Overview
NameCN185908
Unique NameCN185908
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185908 vs. ExPASy Swiss-Prot
Match: ILVC_GEOUR (Ketol-acid reductoisomerase OS=Geobacter uraniireducens (strain Rf4) GN=ilvC PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.953e-11
Identity = 50/164 (30.49%), Postives = 78/164 (47.56%), Query Frame = 3
Query:  135 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI--TGIISKIISTQGMLAVYNSFS----------------GEDKKEFEK 566
            +I VI V PKG G  VR  Y +G      G+ S  A+H D  G + +VAL ++ A G        T+ ++E  +D+FGE+ +L G +  ++++ F    E G   ++AY    EC+  T +I  +I   G+  +  S S                GE KKE +K
Sbjct:  121 DINVIMVAPKGPGHLVRHEYTKG-----GGVPSLIAIHHDPSGNSRDVALAYASANGGGKAGIIETSFKEETETDLFGEQAVLCGGISALIQAGFETLVEAGYAPEMAY---FECLHETKLIVDLIYEGGIANMRYSVSNTAEYGDLTRGPRVITGETKKEMKK 276          
BLAST of CN185908 vs. ExPASy Swiss-Prot
Match: ILVC_CLOB8 (Ketol-acid reductoisomerase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=ilvC PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.953e-11
Identity = 39/111 (35.14%), Postives = 56/111 (50.45%), Query Frame = 3
Query:  129 PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAY 455
            P  + V  V PKG G  VRR Y +G     AG+    AVHQD  G+A   AL ++  +G        TT + E  +D+FGE+ +L G V  ++++ F    E G   + AY
Sbjct:  120 PSYVDVFMVAPKGPGHLVRRTYTEG-----AGVPCLIAVHQDATGKAKQYALAYANGIGGARAGVLETTFKDETETDLFGEQAVLCGGVSELIKAGFETLVEAGYAPENAY 225          
BLAST of CN185908 vs. ExPASy Swiss-Prot
Match: ILVC_AZOSE (Ketol-acid reductoisomerase OS=Azoarcus sp. (strain EbN1) GN=ilvC PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.953e-11
Identity = 41/116 (35.34%), Postives = 62/116 (53.45%), Query Frame = 3
Query:  135 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP--FTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI 476
            ++ VI V PKG G +VR  Y++G      G+ S  AVHQD  G+A ++AL ++ A G        T   +E  +D+FGE+ +L G    +V+  F   TE G   ++AY    EC+
Sbjct:  121 DLDVIMVAPKGPGHTVRSEYLKG-----GGVPSLIAVHQDRSGKAKDIALSYAAANGGTKGGVIETNFREETETDLFGEQAVLCGGAVELVKMGFETLTEAGYAPEMAY---FECL 228          
The following BLAST results are available for this feature:
BLAST of CN185908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 213
Match NameE-valueIdentityDescription
ILVC_GEOUR9.953e-1130.49Ketol-acid reductoisomerase OS=Geobacter uraniired... [more]
ILVC_CLOB89.953e-1135.14Ketol-acid reductoisomerase OS=Clostridium beijeri... [more]
ILVC_AZOSE9.953e-1135.34Ketol-acid reductoisomerase OS=Azoarcus sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002A19_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185908 ID=CN185908; Name=CN185908; organism=Citrus sinensis; type=EST; length=771bp
GCGGTATTTCTGATGCTGCTCAGGCGGATAATTATGAGAAGATATTCTCT
TGCATGAAACCAAACAGCATCCTTGGACTTTCCCATGGGTTCCTTCTTGG
GCATTTGCAGTCAATGGGACTTGATTTCCCAAAGAATATCGGTGTGATTG
CTGTGTGTCCCAAGGGAATGGGTCCATCTGTGAGGAGACTCTATGTTCAA
GGCAAAGAGATTAATGGTGCTGGAATTAATTCCAGTTTTGCTGTCCACCA
GGATGTTGATGGAAGAGCTACCAATGTCGCCCTAGGATGGTCAGTTGCCC
TTGGTTCTCCTTTCACATTTGCCACCACATTAGAGCAGGAGTACAGGAGT
GACATCTTTGGGGAGCGTGGCATTCTACTTGGTGCTGTTCATGGAATTGT
GGAATCCTTGTTTAGAAGGTTCACTGAAAATGGAATGAATGAGGATCTGG
CTTACAAGAATACCGTGGAGTGCATAACAGGAATTATATCAAAGATCATC
TCAACTCAGGGTATGTTGGCTGTCTACAATTCCTTCTCTGGAGAAGACAA
AAAGGAATTCGAGAAAGCTTATAGTGCCTCATATTATCCGTGCATGGAAA
TCTTATATGAGTGCTATGAAGATGTGGCCGCTGGCAGTGAGATCCGCAGT
GTTGTCTTGGCTGGACGTCGGTTTTATGAAAAGGAAGGTCTACCAGCTTT
CCCTATGGGAAAAATTGATCAGACTCGCATGTGGAAAGTTGGTGAGCGAG
TCCGATCAACACGTCCAGCAG
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