CN185908

Overview
NameCN185908
Unique NameCN185908
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN185908 vs. ExPASy Swiss-Prot
Match: ILVC_STRZP (Ketol-acid reductoisomerase OS=Streptococcus pneumoniae (strain P1031) GN=ilvC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.094e-12
Identity = 39/111 (35.14%), Postives = 60/111 (54.05%), Query Frame = 3 
Query:  129 PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAY 455
            P ++ V    PKG G  VRR Y +G      G+ + +AV+QD  G A N+A+ W   +G+       TT ++E   D+FGE+ +L G +  ++E+ F   TE G   +LAY
Sbjct:  120 PADVDVFMCAPKGPGHLVRRTYEEG-----FGVPALYAVYQDATGNAKNIAMDWCKGVGAARVGLLETTYKEETEEDLFGEQAVLCGGLTALIEAGFEVLTEAGYAPELAY 225
[Close]
BLAST of CN185908 vs. ExPASy Swiss-Prot
Match: ILVC_STRZJ (Ketol-acid reductoisomerase OS=Streptococcus pneumoniae (strain JJA) GN=ilvC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.094e-12
Identity = 39/111 (35.14%), Postives = 60/111 (54.05%), Query Frame = 3 
Query:  129 PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAY 455
            P ++ V    PKG G  VRR Y +G      G+ + +AV+QD  G A N+A+ W   +G+       TT ++E   D+FGE+ +L G +  ++E+ F   TE G   +LAY
Sbjct:  120 PADVDVFMCAPKGPGHLVRRTYEEG-----FGVPALYAVYQDATGNAKNIAMDWCKGVGAARVGLLETTYKEETEEDLFGEQAVLCGGLTALIEAGFEVLTEAGYAPELAY 225
[Close]
BLAST of CN185908 vs. ExPASy Swiss-Prot
Match: ILVC_STRR6 (Ketol-acid reductoisomerase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=ilvC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.094e-12
Identity = 39/111 (35.14%), Postives = 60/111 (54.05%), Query Frame = 3 
Query:  129 PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAY 455
            P ++ V    PKG G  VRR Y +G      G+ + +AV+QD  G A N+A+ W   +G+       TT ++E   D+FGE+ +L G +  ++E+ F   TE G   +LAY
Sbjct:  120 PADVDVFMCAPKGPGHLVRRTYEEG-----FGVPALYAVYQDATGNAKNIAMDWCKGVGAARVGLLETTYKEETEEDLFGEQAVLCGGLTALIEAGFEVLTEAGYAPELAY 225
[Close]
BLAST of CN185908 vs. ExPASy Swiss-Prot
Match: ILVC_STRPS (Ketol-acid reductoisomerase OS=Streptococcus pneumoniae (strain CGSP14) GN=ilvC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.094e-12
Identity = 39/111 (35.14%), Postives = 60/111 (54.05%), Query Frame = 3 
Query:  129 PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAY 455
            P ++ V    PKG G  VRR Y +G      G+ + +AV+QD  G A N+A+ W   +G+       TT ++E   D+FGE+ +L G +  ++E+ F   TE G   +LAY
Sbjct:  120 PADVDVFMCAPKGPGHLVRRTYEEG-----FGVPALYAVYQDATGNAKNIAMDWCKGVGAARVGLLETTYKEETEEDLFGEQAVLCGGLTALIEAGFEVLTEAGYAPELAY 225
[Close]
BLAST of CN185908 vs. ExPASy Swiss-Prot
Match: ILVC_STRPN (Ketol-acid reductoisomerase OS=Streptococcus pneumoniae GN=ilvC PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.094e-12
Identity = 39/111 (35.14%), Postives = 60/111 (54.05%), Query Frame = 3 
Query:  129 PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAY 455
            P ++ V    PKG G  VRR Y +G      G+ + +AV+QD  G A N+A+ W   +G+       TT ++E   D+FGE+ +L G +  ++E+ F   TE G   +LAY
Sbjct:  120 PADVDVFMCAPKGPGHLVRRTYEEG-----FGVPALYAVYQDATGNAKNIAMDWCKGVGAARVGLLETTYKEETEEDLFGEQAVLCGGLTALIEAGFEVLTEAGYAPELAY 225
[Close]
BLAST of CN185908 vs. ExPASy Swiss-Prot
Match: ILVC_STRPJ (Ketol-acid reductoisomerase OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=ilvC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.094e-12
Identity = 39/111 (35.14%), Postives = 60/111 (54.05%), Query Frame = 3 
Query:  129 PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAY 455
            P ++ V    PKG G  VRR Y +G      G+ + +AV+QD  G A N+A+ W   +G+       TT ++E   D+FGE+ +L G +  ++E+ F   TE G   +LAY
Sbjct:  120 PADVDVFMCAPKGPGHLVRRTYEEG-----FGVPALYAVYQDATGNAKNIAMDWCKGVGAARVGLLETTYKEETEEDLFGEQAVLCGGLTALIEAGFEVLTEAGYAPELAY 225
[Close]
BLAST of CN185908 vs. ExPASy Swiss-Prot
Match: ILVC_STRPI (Ketol-acid reductoisomerase OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=ilvC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.094e-12
Identity = 39/111 (35.14%), Postives = 60/111 (54.05%), Query Frame = 3 
Query:  129 PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAY 455
            P ++ V    PKG G  VRR Y +G      G+ + +AV+QD  G A N+A+ W   +G+       TT ++E   D+FGE+ +L G +  ++E+ F   TE G   +LAY
Sbjct:  120 PADVDVFMCAPKGPGHLVRRTYEEG-----FGVPALYAVYQDATGNAKNIAMDWCKGVGAARVGLLETTYKEETEEDLFGEQAVLCGGLTALIEAGFEVLTEAGYAPELAY 225
[Close]
BLAST of CN185908 vs. ExPASy Swiss-Prot
Match: ILVC_STRP7 (Ketol-acid reductoisomerase OS=Streptococcus pneumoniae (strain 70585) GN=ilvC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.094e-12
Identity = 39/111 (35.14%), Postives = 60/111 (54.05%), Query Frame = 3 
Query:  129 PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAY 455
            P ++ V    PKG G  VRR Y +G      G+ + +AV+QD  G A N+A+ W   +G+       TT ++E   D+FGE+ +L G +  ++E+ F   TE G   +LAY
Sbjct:  120 PADVDVFMCAPKGPGHLVRRTYEEG-----FGVPALYAVYQDATGNAKNIAMDWCKGVGAARVGLLETTYKEETEEDLFGEQAVLCGGLTALIEAGFEVLTEAGYAPELAY 225
[Close]
BLAST of CN185908 vs. ExPASy Swiss-Prot
Match: ILVC_STRP2 (Ketol-acid reductoisomerase OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=ilvC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.094e-12
Identity = 39/111 (35.14%), Postives = 60/111 (54.05%), Query Frame = 3 
Query:  129 PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAY 455
            P ++ V    PKG G  VRR Y +G      G+ + +AV+QD  G A N+A+ W   +G+       TT ++E   D+FGE+ +L G +  ++E+ F   TE G   +LAY
Sbjct:  120 PADVDVFMCAPKGPGHLVRRTYEEG-----FGVPALYAVYQDATGNAKNIAMDWCKGVGAARVGLLETTYKEETEEDLFGEQAVLCGGLTALIEAGFEVLTEAGYAPELAY 225
[Close]
BLAST of CN185908 vs. ExPASy Swiss-Prot
Match: ILVC_NOSP7 (Ketol-acid reductoisomerase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ilvC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.094e-12
Identity = 44/141 (31.21%), Postives = 74/141 (52.48%), Query Frame = 3 
Query:  129 PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT--FATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI--TGIISKIISTQGMLAVYNSFS 539
            P N+ V+ V PKG G  VRR Y  G+     G+ + FAV+QD  G+A + A+ ++  +G        TT  +E  +D+FGE+ +L G +  ++++ F    E G   +LAY    EC+    +I  ++   G+  + +S S
Sbjct:  120 PANVDVVMVAPKGPGHLVRRTYEGGE-----GVPALFAVYQDASGQARDRAMSYAKGIGGTRAGVLETTFREETETDLFGEQAVLCGGLSALIKAGFETLVEAGYQPELAY---FECLHEVKLIVDLVVEGGLAKMRDSIS 252
The following BLAST results are available for this feature:
BLAST of CN185908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 213
Match NameE-valueIdentityDescription
ILVC_STRZP3.094e-1235.14Ketol-acid reductoisomerase OS=Streptococcus pneum... [more]
ILVC_STRZJ3.094e-1235.14Ketol-acid reductoisomerase OS=Streptococcus pneum... [more]
ILVC_STRR63.094e-1235.14Ketol-acid reductoisomerase OS=Streptococcus pneum... [more]
ILVC_STRPS3.094e-1235.14Ketol-acid reductoisomerase OS=Streptococcus pneum... [more]
ILVC_STRPN3.094e-1235.14Ketol-acid reductoisomerase OS=Streptococcus pneum... [more]
ILVC_STRPJ3.094e-1235.14Ketol-acid reductoisomerase OS=Streptococcus pneum... [more]
ILVC_STRPI3.094e-1235.14Ketol-acid reductoisomerase OS=Streptococcus pneum... [more]
ILVC_STRP73.094e-1235.14Ketol-acid reductoisomerase OS=Streptococcus pneum... [more]
ILVC_STRP23.094e-1235.14Ketol-acid reductoisomerase OS=Streptococcus pneum... [more]
ILVC_NOSP73.094e-1231.21Ketol-acid reductoisomerase OS=Nostoc punctiforme ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002A19_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185908 ID=CN185908; Name=CN185908; organism=Citrus sinensis; type=EST; length=771bp
GCGGTATTTCTGATGCTGCTCAGGCGGATAATTATGAGAAGATATTCTCT
TGCATGAAACCAAACAGCATCCTTGGACTTTCCCATGGGTTCCTTCTTGG
GCATTTGCAGTCAATGGGACTTGATTTCCCAAAGAATATCGGTGTGATTG
CTGTGTGTCCCAAGGGAATGGGTCCATCTGTGAGGAGACTCTATGTTCAA
GGCAAAGAGATTAATGGTGCTGGAATTAATTCCAGTTTTGCTGTCCACCA
GGATGTTGATGGAAGAGCTACCAATGTCGCCCTAGGATGGTCAGTTGCCC
TTGGTTCTCCTTTCACATTTGCCACCACATTAGAGCAGGAGTACAGGAGT
GACATCTTTGGGGAGCGTGGCATTCTACTTGGTGCTGTTCATGGAATTGT
GGAATCCTTGTTTAGAAGGTTCACTGAAAATGGAATGAATGAGGATCTGG
CTTACAAGAATACCGTGGAGTGCATAACAGGAATTATATCAAAGATCATC
TCAACTCAGGGTATGTTGGCTGTCTACAATTCCTTCTCTGGAGAAGACAA
AAAGGAATTCGAGAAAGCTTATAGTGCCTCATATTATCCGTGCATGGAAA
TCTTATATGAGTGCTATGAAGATGTGGCCGCTGGCAGTGAGATCCGCAGT
GTTGTCTTGGCTGGACGTCGGTTTTATGAAAAGGAAGGTCTACCAGCTTT
CCCTATGGGAAAAATTGATCAGACTCGCATGTGGAAAGTTGGTGAGCGAG
TCCGATCAACACGTCCAGCAG
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