CN185901

Overview
NameCN185901
Unique NameCN185901
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2611 contig Csv1_Contig2611:202..957. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN185901 vs. ExPASy Swiss-Prot
Match: WRK19_ARATH (Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.673e-11
Identity = 29/58 (50.00%), Postives = 41/58 (70.69%), Query Frame = -3 
Query:  420 LDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGMHSH 593
            ++DGY W+KYGQK VK +KFP SYY+CT+ GC  K++V+R + D  V    Y+  H+H
Sbjct:  467 VNDGYNWQKYGQKKVKGSKFPLSYYKCTYLGCPSKRKVER-SLDGQVAEIVYKDRHNH 523
The following BLAST results are available for this feature:
BLAST of CN185901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
WRK19_ARATH9.673e-1150.00Probable WRKY transcription factor 19 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002A15_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185901 ID=CN185901; Name=CN185901; organism=Citrus sinensis; type=EST; length=760bp
TTTTTTTTTTTTTTTCTTATGCAAATGTTTGATAGATAATAGTTAACTCT
TAATGGCCTAGAAACTGAAGTAGATTAAAAAAAAAATCCCATAAAAAGAG
AACAAAATAATGAACCAAATCACCAATGCAGGCAAGTTCTGTTTCTAAAT
TCTAATGACTGCACACAGTACAACAAACTAAAAGGCATTGCCATAAAAAT
ACAACATGTGTTCAAATTATACTAGAGAAGTATCCTGCCCAGTGCTCTGG
AAATTTTATTTCGAGGGTTCAAGTTTATGGATGCTAGATAATTTACAACG
TATTAAGAAGTATCTAGCCCTTTACTGCTGCTTGCTAGTTGAGGAGTGAA
TTAATAAGAAGTGTAGATTTGCATCTGGTTCAAGATGTGCTCGAAGTTAT
CAGTTGATCTCTCGATGGGATGTGAATGCATTCCTTCGTAAGTTGTCACC
ACAACTCCTTCATCTTTGGTTAGTCGTTGAACTTGCTTCTTCACATTGCA
GCCTTGATGCGTGCATCGGTAGTAGCTTCTTGGAAACTTGTTGTTTTTAA
CAGCTTTTTGGCCATACTTTCGCCATCTATAGCCATCATCAAGTATATCA
ACTTGGCTTCGTGTTTGAAAAGCATATCTTGGCTTTCTCACCTTCTTCTC
TCCCTTTTTAATCTTTCCCATTTTCTCTCCGTTTTCAGACCCTGTTTCGT
ACAATAAAGAGCCCTCTATTTCCAGTTTTAAGTTCTAAGTTCTAAGCTCA
ATCAACATGT
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