CN185891

Overview
NameCN185891
Unique NameCN185891
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5924 contig Csv1_Contig5924:98..830. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBC9_MESAU (SUMO-conjugating enzyme UBC9 OS=Mesocricetus auratus GN=UBE2I PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.003e-14
Identity = 42/122 (34.43%), Postives = 55/122 (45.08%), Query Frame = -3
Query:  300 NIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKK 665
            N+  W   I G   T +EGG F   M F  +YP+SPP  KF   ++HPNVYP G VC+SIL    D           W P  T              PN + PA  EA   +   R +++K+
Sbjct:   37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKD-----------WRPAITINQLFIGIQELLNEPNIQEPAQAEAYTIYCQNRVEYEKR 147          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBC21_ARATH (Probable ubiquitin carrier protein E2 21 OS=Arabidopsis thaliana GN=UBC21 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.922e-14
Identity = 40/114 (35.09%), Postives = 55/114 (48.25%), Query Frame = -3
Query:  342 LVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNV-YPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEA 680
            + D+TNIF+W+  I GP +T YEGG F    S P  YP  PP V+F T+I+HPNV +  G +C+ IL                W P  T +            P  +SP N ++
Sbjct:   28 ICDDTNIFKWTALIKGPSETPYEGGVFQLAFSVPEPYPLQPPQVRFLTKIFHPNVHFKTGEICLDIL-------------KNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDS 128          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBC4_YEAST (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae GN=UBC4 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.122e-14
Identity = 41/138 (29.71%), Postives = 67/138 (48.55%), Query Frame = -3
Query:  306 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFK 719
            DL ++P    SAG V + +++ W  +I+GP D+ Y GG F   + FP++YP  PP + FTT+I+HPN+  +G +C+ IL              ++W P  T               N + P   E A  ++  R  ++
Sbjct:   13 DLERDPPTSCSAGPVGD-DLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNICLDIL-------------KDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIYKTDRPKYE 136          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBC9_DICDI (Sumo-conjugating enzyme ubc9 OS=Dictyostelium discoideum GN=ubc9 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.737e-14
Identity = 40/123 (32.52%), Postives = 60/123 (48.78%), Query Frame = -3
Query:  297 NIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKV 665
            N++ W+  I G   T +EGG +  IM F  +YP+ PP  +F  + +HPNVYP G VC+SIL+   D           W P  T +           +PN +SPA       +   ++++ KKV
Sbjct:   37 NLYVWNCGIPGKTKTNWEGGVYPLIMEFTEDYPSKPPKCRFPKDFFHPNVYPSGTVCLSILNEEAD-----------WKPSVTIKTVLLGIQDLLDNPNPKSPAQQLPIHLFLTNKEEYDKKV 148          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBCB_DICDI (Ubiquitin conjugating enzyme E2 B OS=Dictyostelium discoideum GN=ubcB PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.141e-13
Identity = 43/140 (30.71%), Postives = 68/140 (48.57%), Query Frame = -3
Query:  303 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNV-YPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKK 719
            D+ K P +  SA LVD+ N+ +W  T+ GP  + +E G F+  +  P++YP  PPT+KFTT+I+HPN+   DG +C  +                 W P                 PN ++P   E A++++  R+ F K
Sbjct:   13 DMLKTPPSWCSAHLVDD-NLQKWKATVQGPEGSPFEKGVFSMDIDIPADYPFKPPTLKFTTKIYHPNIKTSDGAICAEVF--------------STWSPQLKILDVLTTIRSILTDPNPDNPLETEIAQQFKTDRNAFNK 137          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.141e-13
Identity = 41/139 (29.50%), Postives = 66/139 (47.48%), Query Frame = -3
Query:  306 KDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFK 722
            K+L ++P    SAG   E ++F W  TI+GP ++ Y GG F   + FP +YP  PP V F T+++HPN+  +G +C+ IL              ++W P  T              PN + P   E A  ++  +  ++
Sbjct:   11 KELQRDPPVSCSAGPTGE-DMFHWQATIMGPNESPYSGGVFLVNIHFPPDYPFKPPKVVFRTKVFHPNINSNGNICLDIL-------------KDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHIYKTDKTKYE 135          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBC20_ARATH (Ubiquitin carrier protein E2 20 OS=Arabidopsis thaliana GN=UBC20 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.542e-13
Identity = 41/126 (32.54%), Postives = 61/126 (48.41%), Query Frame = -3
Query:  297 DETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKV 674
            +E NIF W  TI G  DT++EG  +   +SF ++YP  PP VKF T  +HPNV   G +C+ IL              ++W   +               PN  SP N +AA+ W   +++++K V
Sbjct:   60 EEDNIFCWKGTITGSKDTVFEGTEYRLSLSFSNDYPFKPPKVKFETCCFHPNVDVYGNICLDIL-------------QDKWSSAYDVRTILLSIQSLLGEPNISSPLNTQAAQLW-SNQEEYRKMV 171          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBC9_PAGMA (SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ube2i PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.320e-13
Identity = 42/123 (34.15%), Postives = 56/123 (45.53%), Query Frame = -3
Query:  297 NIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKV 665
            N+      I G   T +EGG F   M F  +YP+SPP  KF   ++HPNVYP G VC+SIL    D           W P  T +            PN + PA  EA   +   R +++K+V
Sbjct:   37 NLMNGECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKD-----------WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIFCQDRTEYEKRV 148          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBE2C_HUMAN (Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens GN=UBE2C PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.663e-13
Identity = 38/117 (32.48%), Postives = 55/117 (47.01%), Query Frame = -3
Query:  324 DETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWRD 674
            +  N+F+W  TI G   T+YE   +   + FPS YP + PTVKF T  +HPNV   G +C+ IL              E+W  ++               PN +SP N  AA+ W++
Sbjct:   55 ESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDIL-------------KEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKN 158          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBC9_YEAST (SUMO-conjugating enzyme UBC9 OS=Saccharomyces cerevisiae GN=UBC9 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.663e-13
Identity = 39/120 (32.50%), Postives = 56/120 (46.67%), Query Frame = -3
Query:  297 EWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKV 656
            +W   I G   T + GG +   + +P+ YP+ PP VKF    +HPNVYP G +C+SIL+   D           W P  T +           SPN  SPA   A + +   + ++ KKV
Sbjct:   40 KWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQD-----------WRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKV 148          
The following BLAST results are available for this feature:
BLAST of CN185891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
UBC9_MESAU3.003e-1434.43SUMO-conjugating enzyme UBC9 OS=Mesocricetus aurat... [more]
UBC21_ARATH3.922e-1435.09Probable ubiquitin carrier protein E2 21 OS=Arabid... [more]
UBC4_YEAST5.122e-1429.71Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces... [more]
UBC9_DICDI8.737e-1432.52Sumo-conjugating enzyme ubc9 OS=Dictyostelium disc... [more]
UBCB_DICDI1.141e-1330.71Ubiquitin conjugating enzyme E2 B OS=Dictyostelium... [more]
UBC29_ARATH1.141e-1329.50Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBC20_ARATH2.542e-1332.54Ubiquitin carrier protein E2 20 OS=Arabidopsis tha... [more]
UBC9_PAGMA3.320e-1334.15SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ub... [more]
UBE2C_HUMAN5.663e-1332.48Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens ... [more]
UBC9_YEAST5.663e-1332.50SUMO-conjugating enzyme UBC9 OS=Saccharomyces cere... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002A10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185891 ID=CN185891; Name=CN185891; organism=Citrus sinensis; type=EST; length=733bp
TTTTTTTTTTTTACTTAGAGAACGACAGAACATTTGTGACCAATTTTAAC
CAAAGAACGCTTTTGAATACATGGATGTTCCCCGTCGTTACAGTGACTTG
ACCATGCAGAGAAAACGAGAGAGATGGTTGAGAGAACTTCAAAATGCCAG
TCTACACAAGACCAAGTACCCACAGAACCCAGTTCCCCCCACGCGGTTAA
ATCAAGACATTTCCCGTACAAACACATAGGTAGAGAAAAAAAAGAGTGCC
TGCAGTTGGTTTACAACATTTCTTGTGATCTTCTCACACAGCGGCCTACT
TTCTTCTTGAAGTCATCTCTCCTGTCTCTCCATTCTTTTGCAGCTTCGAC
ATTTGCAGGAGATTCATCATTAGGACTGGAAAGCATTGATATGATACTCA
AAACGATACTTTCAGCAGTATGAACAGGCATCCAGCGCTCACTTGCGAGC
TCATATCCATTAGGGTCGTCACCTGGAGGATGAAGGATTGATATGCAGAC
ACGCCCATCCGGATAGACATTAGGATGCCAAATCTCTGTTGTAAACTTCA
CTGTAGGTGGGCTATTAGGGTAGTTTGATGGAAAGCTCATAATGGCATTG
AAAAATCCCCCCTCATAAAGAGTATCAGGTGGTCCAATAATTGTAACACT
CCATTCAAAGATATTTGTCTCATCCACCAACCCGGCAGAAAACCCAGCAA
CAGGGTTCTTACAAAGATCTTTTTAGTTGTTTT
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