CN185891

Overview
NameCN185891
Unique NameCN185891
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBE2N_MACFA (Ubiquitin-conjugating enzyme E2 N OS=Macaca fascicularis GN=UBE2N PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.660e-13
Identity = 41/130 (31.54%), Postives = 60/130 (46.15%), Query Frame = -3
Query:  327 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWR 716
            L   PV G  A   DE+N   + V I GP D+ +EGG F   +  P  YP + P V+F T+I+HPNV   GR+C+ IL              ++W P                +PN + P   + A++W+
Sbjct:   15 LLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKSGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWK 130          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBE2C_XENLA (Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevis GN=ube2c PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.660e-13
Identity = 38/118 (32.20%), Postives = 57/118 (48.31%), Query Frame = -3
Query:  321 DETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWRDR 674
            +  N+F+W  TI G   T+YE   +   + FPS YP + PTVKF T  +HPNV   G +C+ IL              ++W  ++               PN+ESP N  AA+ W+++
Sbjct:   55 ESDNLFKWIGTIDGAVGTVYEDLRYKLSLEFPSGYPYNAPTVKFVTPCFHPNVDSHGNICLDIL-------------KDKWSALYDVRTILLSLQSLLGEPNNESPLNPYAAELWQNQ 159          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBE2C_MOUSE (Ubiquitin-conjugating enzyme E2 C OS=Mus musculus GN=Ube2c PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.262e-12
Identity = 37/117 (31.62%), Postives = 55/117 (47.01%), Query Frame = -3
Query:  324 DETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWRD 674
            +  N+F+W  TI G   T+YE   +   + FPS YP + PTVKF T  +HPNV   G +C+ IL              ++W  ++               PN +SP N  AA+ W++
Sbjct:   55 ESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDIL-------------KDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKN 158          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBE2C_MACFA (Ubiquitin-conjugating enzyme E2 C OS=Macaca fascicularis GN=UBE2C PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.262e-12
Identity = 37/117 (31.62%), Postives = 55/117 (47.01%), Query Frame = -3
Query:  324 DETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWRD 674
            +  N+F+W  TI G   T+YE   +   + FPS YP + PTVKF T  +HPNV   G +C+ IL              ++W  ++               PN +SP N  AA+ W++
Sbjct:   55 ESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDIL-------------KDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKN 158          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBE2C_BOVIN (Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN=UBE2C PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.262e-12
Identity = 37/117 (31.62%), Postives = 55/117 (47.01%), Query Frame = -3
Query:  324 DETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWRD 674
            +  N+F+W  TI G   T+YE   +   + FPS YP + PTVKF T  +HPNV   G +C+ IL              ++W  ++               PN +SP N  AA+ W++
Sbjct:   55 ESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDIL-------------KDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKN 158          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBC36_ARATH (Ubiquitin carrier protein E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 40/130 (30.77%), Postives = 60/130 (46.15%), Query Frame = -3
Query:  327 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWR 716
            L   P  G SA   +E N+  ++V I+GP  + YEGG F   +  P  YP + P V+F T+I+HPN+   GR+C+ IL              ++W P                +PN + P +   AK W+
Sbjct:   17 LLSEPAPGISASPSEE-NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWK 132          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBC35_ARATH (Ubiquitin carrier protein E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 40/130 (30.77%), Postives = 59/130 (45.38%), Query Frame = -3
Query:  327 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWR 716
            L   P  G SA    E N+  ++V I+GP  + YEGG F   +  P  YP + P V+F T+I+HPN+   GR+C+ IL              ++W P                +PN + P +   AK W+
Sbjct:   17 LLSEPAPGISAS-PSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWK 132          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBE2N_RAT (Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.811e-12
Identity = 41/130 (31.54%), Postives = 60/130 (46.15%), Query Frame = -3
Query:  327 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWR 716
            L   PV G  A   DE+N   + V I GP D+ +EGG F   +  P  YP + P V+F T+I+HPNV   GR+C+ IL              ++W P                +PN + P   + A++W+
Sbjct:   15 LLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWK 130          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBE2N_PONAB (Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii GN=UBE2N PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.811e-12
Identity = 41/130 (31.54%), Postives = 60/130 (46.15%), Query Frame = -3
Query:  327 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWR 716
            L   PV G  A   DE+N   + V I GP D+ +EGG F   +  P  YP + P V+F T+I+HPNV   GR+C+ IL              ++W P                +PN + P   + A++W+
Sbjct:   15 LLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWK 130          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBE2N_MOUSE (Ubiquitin-conjugating enzyme E2 N OS=Mus musculus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.811e-12
Identity = 41/130 (31.54%), Postives = 60/130 (46.15%), Query Frame = -3
Query:  327 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWR 716
            L   PV G  A   DE+N   + V I GP D+ +EGG F   +  P  YP + P V+F T+I+HPNV   GR+C+ IL              ++W P                +PN + P   + A++W+
Sbjct:   15 LLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWK 130          
The following BLAST results are available for this feature:
BLAST of CN185891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
UBE2N_MACFA9.660e-1331.54Ubiquitin-conjugating enzyme E2 N OS=Macaca fascic... [more]
UBE2C_XENLA9.660e-1332.20Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevi... [more]
UBE2C_MOUSE1.262e-1231.62Ubiquitin-conjugating enzyme E2 C OS=Mus musculus ... [more]
UBE2C_MACFA1.262e-1231.62Ubiquitin-conjugating enzyme E2 C OS=Macaca fascic... [more]
UBE2C_BOVIN1.262e-1231.62Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN... [more]
UBC36_ARATH1.648e-1230.77Ubiquitin carrier protein E2 36 OS=Arabidopsis tha... [more]
UBC35_ARATH1.648e-1230.77Ubiquitin carrier protein E2 35 OS=Arabidopsis tha... [more]
UBE2N_RAT2.811e-1231.54Ubiquitin-conjugating enzyme E2 N OS=Rattus norveg... [more]
UBE2N_PONAB2.811e-1231.54Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii ... [more]
UBE2N_MOUSE2.811e-1231.54Ubiquitin-conjugating enzyme E2 N OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002A10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185891 ID=CN185891; Name=CN185891; organism=Citrus sinensis; type=EST; length=733bp
TTTTTTTTTTTTACTTAGAGAACGACAGAACATTTGTGACCAATTTTAAC
CAAAGAACGCTTTTGAATACATGGATGTTCCCCGTCGTTACAGTGACTTG
ACCATGCAGAGAAAACGAGAGAGATGGTTGAGAGAACTTCAAAATGCCAG
TCTACACAAGACCAAGTACCCACAGAACCCAGTTCCCCCCACGCGGTTAA
ATCAAGACATTTCCCGTACAAACACATAGGTAGAGAAAAAAAAGAGTGCC
TGCAGTTGGTTTACAACATTTCTTGTGATCTTCTCACACAGCGGCCTACT
TTCTTCTTGAAGTCATCTCTCCTGTCTCTCCATTCTTTTGCAGCTTCGAC
ATTTGCAGGAGATTCATCATTAGGACTGGAAAGCATTGATATGATACTCA
AAACGATACTTTCAGCAGTATGAACAGGCATCCAGCGCTCACTTGCGAGC
TCATATCCATTAGGGTCGTCACCTGGAGGATGAAGGATTGATATGCAGAC
ACGCCCATCCGGATAGACATTAGGATGCCAAATCTCTGTTGTAAACTTCA
CTGTAGGTGGGCTATTAGGGTAGTTTGATGGAAAGCTCATAATGGCATTG
AAAAATCCCCCCTCATAAAGAGTATCAGGTGGTCCAATAATTGTAACACT
CCATTCAAAGATATTTGTCTCATCCACCAACCCGGCAGAAAACCCAGCAA
CAGGGTTCTTACAAAGATCTTTTTAGTTGTTTT
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