CN185891

Overview
NameCN185891
Unique NameCN185891
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBE2N_HUMAN (Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens GN=UBE2N PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.811e-12
Identity = 41/130 (31.54%), Postives = 60/130 (46.15%), Query Frame = -3
Query:  327 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWR 716
            L   PV G  A   DE+N   + V I GP D+ +EGG F   +  P  YP + P V+F T+I+HPNV   GR+C+ IL              ++W P                +PN + P   + A++W+
Sbjct:   15 LLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWK 130          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBE2N_DROME (Ubiquitin-conjugating enzyme E2 N OS=Drosophila melanogaster GN=ben PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.811e-12
Identity = 39/130 (30.00%), Postives = 62/130 (47.69%), Query Frame = -3
Query:  327 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWR 716
            L + PV G +A + DE N   + V + GP D+ +EGG F   +  P +YP S P V+F T+I+HPN+   GR+C+ +L              ++W P                +PN + P   + A+ W+
Sbjct:   15 LMQEPVPGINA-IPDENNARYFHVIVTGPNDSPFEGGVFKLELFLPEDYPMSAPKVRFITKIYHPNIDRLGRICLDVL-------------KDKWSPALQIRTILLSIQALLSAPNPDDPLANDVAELWK 130          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBE2N_BOVIN (Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN=UBE2N PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.811e-12
Identity = 41/130 (31.54%), Postives = 60/130 (46.15%), Query Frame = -3
Query:  327 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWR 716
            L   PV G  A   DE+N   + V I GP D+ +EGG F   +  P  YP + P V+F T+I+HPNV   GR+C+ IL              ++W P                +PN + P   + A++W+
Sbjct:   15 LLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWK 130          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBC13_SCHPO (Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccharomyces pombe GN=ubc13 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.262e-12
Identity = 39/131 (29.77%), Postives = 62/131 (47.33%), Query Frame = -3
Query:  324 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWRD 716
            L ++P  G  A   ++ N+  + +T+ GP  + YEGG F+  +  P  YP  PP V+F T+I+HPNV   GR+C+S L              + W P                +PN + P + + AK W++
Sbjct:   14 LTRDPPPGIVAAPTED-NLRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMMPPNVRFLTKIYHPNVDKLGRICLSTL-------------KKDWSPALQIRTVLLSIQALMGAPNPDDPLDNDVAKIWKE 130          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UB2E3_MOUSE (Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus GN=Ube2e3 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.262e-12
Identity = 34/79 (43.04%), Postives = 49/79 (62.03%), Query Frame = -3
Query:  483 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISIL 719
            ++  +P    SAG   + NI+EW  TI+GPP ++YEGG F   ++F S+YP  PP V F T I+H N+   G +C+ IL
Sbjct:   72 EITLDPPPNCSAGPKGD-NIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDIL 149          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UB2E3_HUMAN (Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens GN=UBE2E3 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.262e-12
Identity = 34/79 (43.04%), Postives = 49/79 (62.03%), Query Frame = -3
Query:  483 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISIL 719
            ++  +P    SAG   + NI+EW  TI+GPP ++YEGG F   ++F S+YP  PP V F T I+H N+   G +C+ IL
Sbjct:   72 EITLDPPPNCSAGPKGD-NIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDIL 149          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UB2E3_BOVIN (Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus GN=UBE2E3 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.262e-12
Identity = 34/79 (43.04%), Postives = 49/79 (62.03%), Query Frame = -3
Query:  483 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISIL 719
            ++  +P    SAG   + NI+EW  TI+GPP ++YEGG F   ++F S+YP  PP V F T I+H N+   G +C+ IL
Sbjct:   72 EITLDPPPNCSAGPKGD-NIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDIL 149          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBC1_YEAST (Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharomyces cerevisiae GN=UBC1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.178e-12
Identity = 41/136 (30.15%), Postives = 60/136 (44.12%), Query Frame = -3
Query:  303 NPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYP-DGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKK 707
            +P A  +   V E++I     T +GPP T YEGG F   +  P  YP  PP ++F T+++HPN+    G +C+ IL                W PV T +           SP    P + E A+ +   R+ F K
Sbjct:   17 DPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDIL-------------KNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNK 139          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UB2L3_PONAB (Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii GN=UBE2L3 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.068e-11
Identity = 39/135 (28.89%), Postives = 64/135 (47.41%), Query Frame = -3
Query:  294 VDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEW-RDRR------DDFKKKVG 677
            VDE N+  W   I+ P +  Y+ G F   ++FP+ YP  PP + F T+I+HPN+   G+VC+ +            +++E W P    +            P  E P   + A+E+ +DR+      ++F KK G
Sbjct:   27 VDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPV------------ISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYG 148          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UB2L3_MOUSE (Ubiquitin-conjugating enzyme E2 L3 OS=Mus musculus GN=Ube2l3 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.068e-11
Identity = 39/135 (28.89%), Postives = 64/135 (47.41%), Query Frame = -3
Query:  294 VDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEW-RDRR------DDFKKKVG 677
            VDE N+  W   I+ P +  Y+ G F   ++FP+ YP  PP + F T+I+HPN+   G+VC+ +            +++E W P    +            P  E P   + A+E+ +DR+      ++F KK G
Sbjct:   27 VDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPV------------ISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYG 148          
The following BLAST results are available for this feature:
BLAST of CN185891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
UBE2N_HUMAN2.811e-1231.54Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens ... [more]
UBE2N_DROME2.811e-1230.00Ubiquitin-conjugating enzyme E2 N OS=Drosophila me... [more]
UBE2N_BOVIN2.811e-1231.54Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN... [more]
UBC13_SCHPO6.262e-1229.77Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccha... [more]
UB2E3_MOUSE6.262e-1243.04Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus... [more]
UB2E3_HUMAN6.262e-1243.04Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens... [more]
UB2E3_BOVIN6.262e-1243.04Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus G... [more]
UBC1_YEAST8.178e-1230.15Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharo... [more]
UB2L3_PONAB1.068e-1128.89Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii... [more]
UB2L3_MOUSE1.068e-1128.89Ubiquitin-conjugating enzyme E2 L3 OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002A10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185891 ID=CN185891; Name=CN185891; organism=Citrus sinensis; type=EST; length=733bp
TTTTTTTTTTTTACTTAGAGAACGACAGAACATTTGTGACCAATTTTAAC
CAAAGAACGCTTTTGAATACATGGATGTTCCCCGTCGTTACAGTGACTTG
ACCATGCAGAGAAAACGAGAGAGATGGTTGAGAGAACTTCAAAATGCCAG
TCTACACAAGACCAAGTACCCACAGAACCCAGTTCCCCCCACGCGGTTAA
ATCAAGACATTTCCCGTACAAACACATAGGTAGAGAAAAAAAAGAGTGCC
TGCAGTTGGTTTACAACATTTCTTGTGATCTTCTCACACAGCGGCCTACT
TTCTTCTTGAAGTCATCTCTCCTGTCTCTCCATTCTTTTGCAGCTTCGAC
ATTTGCAGGAGATTCATCATTAGGACTGGAAAGCATTGATATGATACTCA
AAACGATACTTTCAGCAGTATGAACAGGCATCCAGCGCTCACTTGCGAGC
TCATATCCATTAGGGTCGTCACCTGGAGGATGAAGGATTGATATGCAGAC
ACGCCCATCCGGATAGACATTAGGATGCCAAATCTCTGTTGTAAACTTCA
CTGTAGGTGGGCTATTAGGGTAGTTTGATGGAAAGCTCATAATGGCATTG
AAAAATCCCCCCTCATAAAGAGTATCAGGTGGTCCAATAATTGTAACACT
CCATTCAAAGATATTTGTCTCATCCACCAACCCGGCAGAAAACCCAGCAA
CAGGGTTCTTACAAAGATCTTTTTAGTTGTTTT
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