CN185891

Overview
NameCN185891
Unique NameCN185891
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5924 contig Csv1_Contig5924:98..830. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UB2L3_HUMAN (Ubiquitin-conjugating enzyme E2 L3 OS=Homo sapiens GN=UBE2L3 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.068e-11
Identity = 39/135 (28.89%), Postives = 64/135 (47.41%), Query Frame = -3
Query:  294 VDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEW-RDRR------DDFKKKVG 677
            VDE N+  W   I+ P +  Y+ G F   ++FP+ YP  PP + F T+I+HPN+   G+VC+ +            +++E W P    +            P  E P   + A+E+ +DR+      ++F KK G
Sbjct:   27 VDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPV------------ISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYG 148          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UB2L3_BOVIN (Ubiquitin-conjugating enzyme E2 L3 OS=Bos taurus GN=UBE2L3 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.068e-11
Identity = 39/135 (28.89%), Postives = 64/135 (47.41%), Query Frame = -3
Query:  294 VDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEW-RDRR------DDFKKKVG 677
            VDE N+  W   I+ P +  Y+ G F   ++FP+ YP  PP + F T+I+HPN+   G+VC+ +            +++E W P    +            P  E P   + A+E+ +DR+      ++F KK G
Sbjct:   27 VDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPV------------ISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYG 148          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UB2E1_MOUSE (Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus GN=Ube2e1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.068e-11
Identity = 34/79 (43.04%), Postives = 47/79 (59.49%), Query Frame = -3
Query:  483 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISIL 719
            D+  +P    SAG   + NI+EW  TI+GPP ++YEGG F   ++F   YP  PP V F T I+H N+   G +C+ IL
Sbjct:   58 DITLDPPPNCSAGPKGD-NIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDIL 135          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UB2E1_HUMAN (Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens GN=UBE2E1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.068e-11
Identity = 34/79 (43.04%), Postives = 47/79 (59.49%), Query Frame = -3
Query:  483 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISIL 719
            D+  +P    SAG   + NI+EW  TI+GPP ++YEGG F   ++F   YP  PP V F T I+H N+   G +C+ IL
Sbjct:   58 DITLDPPPNCSAGPKGD-NIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDIL 135          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBC37_ARATH (Probable ubiquitin carrier protein E2 37 OS=Arabidopsis thaliana GN=UBC37 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 40/133 (30.08%), Postives = 55/133 (41.35%), Query Frame = -3
Query:  243 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQEML*TNCRHS 641
            I GP DT+Y  G FN  +  P  YP  PP V F T I+HPN+   GR+C+ IL+ P   P G       W P                 PN +     E ++E++  R  F  K      +  ++    C  S
Sbjct:   51 IEGPEDTVYANGIFNLKIQIPERYPFQPPIVSFATPIYHPNIDNSGRICLDILNLP---PKG------AWQPSLNISTVLTSMRLLLSEPNPDDGLMCEVSREYKYNRQTFDYKAREMTEKYAKVKADGCSTS 174          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBC19_ARATH (Ubiquitin carrier protein E2 19 OS=Arabidopsis thaliana GN=UBC19 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 39/126 (30.95%), Postives = 60/126 (47.62%), Query Frame = -3
Query:  297 DETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKV 674
            +E NIF W  TI G  DT++EG  +   ++F ++YP   P VKF T  +HPNV   G +C+ IL              ++W   +               PN  SP N +AA+ W   +++++K V
Sbjct:   61 EEDNIFCWKGTITGSKDTVFEGTEYRLSLTFSNDYPFKSPKVKFETCCFHPNVDLYGNICLDIL-------------QDKWSSAYDVRTILLSIQSLLGEPNISSPLNNQAAQLW-SNQEEYRKMV 172          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBC1_MIMIV (Probable ubiquitin-conjugating enzyme E2 L460 OS=Acanthamoeba polyphaga mimivirus GN=UBC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.822e-11
Identity = 49/145 (33.79%), Postives = 70/145 (48.28%), Query Frame = -3
Query:  297 NN*KDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKV 731
            NN K+L  +    F   +VDE NIF W V I GP ++LYE   F   +   ++YP S P VKF T I H NV   G +C++IL   G + +   + S  W  +   +            PN E P N E A  +R+ +  + KK+
Sbjct:   17 NNDKNLYAD---SFQINMVDE-NIFLWKVNIKGPENSLYENYNFELEIELSNDYPYSSPKVKFITPIQHMNVNDKGDICLNILKKDGWNAS-LNIISIIWSIIVLLD-----------QPNPEDPFNSELASLYRNDKLSYDKKI 145          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UB2E2_MOUSE (Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus GN=Ube2e2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11
Identity = 33/79 (41.77%), Postives = 48/79 (60.76%), Query Frame = -3
Query:  483 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISIL 719
            ++  +P    SAG   + NI+EW  TI+GPP ++YEGG F   ++F  +YP  PP V F T I+H N+   G +C+ IL
Sbjct:   66 EITLDPPPNCSAGPKGD-NIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDIL 143          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UB2E2_HUMAN (Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens GN=UBE2E2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11
Identity = 33/79 (41.77%), Postives = 48/79 (60.76%), Query Frame = -3
Query:  483 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISIL 719
            ++  +P    SAG   + NI+EW  TI+GPP ++YEGG F   ++F  +YP  PP V F T I+H N+   G +C+ IL
Sbjct:   66 EITLDPPPNCSAGPKGD-NIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDIL 143          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBC12_DROME (NEDD8-conjugating enzyme Ubc12 OS=Drosophila melanogaster GN=CG7375 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.059e-11
Identity = 40/120 (33.33%), Postives = 52/120 (43.33%), Query Frame = -3
Query:  282 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVR 641
            II P +  Y  G F       SNYP+ PP VK  T+++HPN+  DG VC++IL              E W PV                PN E P N EAA   +  R  F+  V + +R
Sbjct:   60 IISPDEGFYRDGRFVFNFRVGSNYPHEPPKVKCATQVYHPNIDLDGNVCLNILR-------------EDWNPVLNINSIVYGLQFLFLEPNPEDPLNKEAADVLQTNRRQFENNVKKAMR 166          
The following BLAST results are available for this feature:
BLAST of CN185891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
UB2L3_HUMAN1.068e-1128.89Ubiquitin-conjugating enzyme E2 L3 OS=Homo sapiens... [more]
UB2L3_BOVIN1.068e-1128.89Ubiquitin-conjugating enzyme E2 L3 OS=Bos taurus G... [more]
UB2E1_MOUSE1.068e-1143.04Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus... [more]
UB2E1_HUMAN1.068e-1143.04Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens... [more]
UBC37_ARATH1.395e-1130.08Probable ubiquitin carrier protein E2 37 OS=Arabid... [more]
UBC19_ARATH1.395e-1130.95Ubiquitin carrier protein E2 19 OS=Arabidopsis tha... [more]
UBC1_MIMIV1.822e-1133.79Probable ubiquitin-conjugating enzyme E2 L460 OS=A... [more]
UB2E2_MOUSE2.379e-1141.77Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus... [more]
UB2E2_HUMAN2.379e-1141.77Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens... [more]
UBC12_DROME4.059e-1133.33NEDD8-conjugating enzyme Ubc12 OS=Drosophila melan... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002A10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185891 ID=CN185891; Name=CN185891; organism=Citrus sinensis; type=EST; length=733bp
TTTTTTTTTTTTACTTAGAGAACGACAGAACATTTGTGACCAATTTTAAC
CAAAGAACGCTTTTGAATACATGGATGTTCCCCGTCGTTACAGTGACTTG
ACCATGCAGAGAAAACGAGAGAGATGGTTGAGAGAACTTCAAAATGCCAG
TCTACACAAGACCAAGTACCCACAGAACCCAGTTCCCCCCACGCGGTTAA
ATCAAGACATTTCCCGTACAAACACATAGGTAGAGAAAAAAAAGAGTGCC
TGCAGTTGGTTTACAACATTTCTTGTGATCTTCTCACACAGCGGCCTACT
TTCTTCTTGAAGTCATCTCTCCTGTCTCTCCATTCTTTTGCAGCTTCGAC
ATTTGCAGGAGATTCATCATTAGGACTGGAAAGCATTGATATGATACTCA
AAACGATACTTTCAGCAGTATGAACAGGCATCCAGCGCTCACTTGCGAGC
TCATATCCATTAGGGTCGTCACCTGGAGGATGAAGGATTGATATGCAGAC
ACGCCCATCCGGATAGACATTAGGATGCCAAATCTCTGTTGTAAACTTCA
CTGTAGGTGGGCTATTAGGGTAGTTTGATGGAAAGCTCATAATGGCATTG
AAAAATCCCCCCTCATAAAGAGTATCAGGTGGTCCAATAATTGTAACACT
CCATTCAAAGATATTTGTCTCATCCACCAACCCGGCAGAAAACCCAGCAA
CAGGGTTCTTACAAAGATCTTTTTAGTTGTTTT
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