CN185891

Overview
NameCN185891
Unique NameCN185891
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5924 contig Csv1_Contig5924:98..830. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBC12_CAEEL (NEDD8-conjugating enzyme ubc-12 OS=Caenorhabditis elegans GN=ubc-12 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.059e-11
Identity = 37/121 (30.58%), Postives = 54/121 (44.63%), Query Frame = -3
Query:  279 IGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPA-NVEAAKEWRDRRDDFKKKVGRCVRR 638
            + P + +Y GG F   ++ P  Y N PP VK  T++WHPN+  DG +C+SIL     D  G       W P                   D + A N++AA+ W   R+ F  +V   + R
Sbjct:   65 VTPQEGIYRGGKFRFKITVPPEYNNVPPVVKCLTKVWHPNINEDGSICLSILRQNSLDQYG-------WRPTRNLTDVVHGLVSLFNDLMDFNDALNIQAAQMWSQNRESFNHRVREYISR 178          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UB2FB_MOUSE (NEDD8-conjugating enzyme UBE2F-B OS=Mus musculus GN=Ube2fb PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.059e-11
Identity = 38/121 (31.40%), Postives = 54/121 (44.63%), Query Frame = -3
Query:  279 IGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHT-AEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRR 638
            + P +  Y+GG F   +  P  Y   PP VK  T+IWHPN+   G +C+S+L     D  G       W P  T  +             N   P N+EAA+     ++DF+ KV   +RR
Sbjct:   69 VSPDEGYYQGGNFQFEIEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSADGTG-------WAPTRTLKDVVWGLNSLFTDLLNFYDPLNIEAAEHHLQDKEDFRDKVDEYIRR 182          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBE2T_XENLA (Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevis GN=ube2t PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.301e-11
Identity = 38/122 (31.15%), Postives = 55/122 (45.08%), Query Frame = -3
Query:  309 DETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDF 674
            +E+N+ +    IIG   + YEGG FN  +  P  YP  PP ++F T I+HPN+   GR+C+ IL  P   P G       W P                 PN + P   + + E++  R  F
Sbjct:   27 NESNMDDLRAQIIGGSGSPYEGGIFNLEIIVPERYPFEPPKIRFLTPIYHPNIDSAGRICLDILKLP---PKG------AWRPALNISTVLTSIQLLMSEPNPDDPLMADISSEFKYNRAVF 139          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBE2F_CHICK (NEDD8-conjugating enzyme UBE2F OS=Gallus gallus GN=UBE2F PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.923e-11
Identity = 40/133 (30.08%), Postives = 60/133 (45.11%), Query Frame = -3
Query:  279 DETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHT-AEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRR 674
            D   +  + +T+I P +  Y+GG F   +  P  Y   PP VK  T IWHPN+   G +C+S+L     D  G       W P  T  +             N + P N+EAA+     ++DF+ KV   ++R
Sbjct:   58 DPNKLHYFQLTVI-PDEGYYQGGKFQFEIEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTG-------WAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVEDYIKR 182          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBE2N_DICDI (Probable ubiquitin-conjugating enzyme E2 N OS=Dictyostelium discoideum GN=ube2n PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 39/130 (30.00%), Postives = 58/130 (44.62%), Query Frame = -3
Query:  327 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWR 716
            L   P  G SA    + N   + V I GP D+ +EGG FN  +    +YP S P V+F T+I+HPN+   GR+C+ IL              ++W P                +PN + P   + A+ W+
Sbjct:   15 LMTEPAPGISATPATD-NFRYFKVAISGPLDSPFEGGVFNLELFLTDDYPMSAPKVRFLTKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEHWK 130          
The following BLAST results are available for this feature:
BLAST of CN185891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
UBC12_CAEEL4.059e-1130.58NEDD8-conjugating enzyme ubc-12 OS=Caenorhabditis ... [more]
UB2FB_MOUSE4.059e-1131.40NEDD8-conjugating enzyme UBE2F-B OS=Mus musculus G... [more]
UBE2T_XENLA5.301e-1131.15Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevi... [more]
UBE2F_CHICK6.923e-1130.08NEDD8-conjugating enzyme UBE2F OS=Gallus gallus GN... [more]
UBE2N_DICDI9.042e-1130.00Probable ubiquitin-conjugating enzyme E2 N OS=Dict... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002A10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185891 ID=CN185891; Name=CN185891; organism=Citrus sinensis; type=EST; length=733bp
TTTTTTTTTTTTACTTAGAGAACGACAGAACATTTGTGACCAATTTTAAC
CAAAGAACGCTTTTGAATACATGGATGTTCCCCGTCGTTACAGTGACTTG
ACCATGCAGAGAAAACGAGAGAGATGGTTGAGAGAACTTCAAAATGCCAG
TCTACACAAGACCAAGTACCCACAGAACCCAGTTCCCCCCACGCGGTTAA
ATCAAGACATTTCCCGTACAAACACATAGGTAGAGAAAAAAAAGAGTGCC
TGCAGTTGGTTTACAACATTTCTTGTGATCTTCTCACACAGCGGCCTACT
TTCTTCTTGAAGTCATCTCTCCTGTCTCTCCATTCTTTTGCAGCTTCGAC
ATTTGCAGGAGATTCATCATTAGGACTGGAAAGCATTGATATGATACTCA
AAACGATACTTTCAGCAGTATGAACAGGCATCCAGCGCTCACTTGCGAGC
TCATATCCATTAGGGTCGTCACCTGGAGGATGAAGGATTGATATGCAGAC
ACGCCCATCCGGATAGACATTAGGATGCCAAATCTCTGTTGTAAACTTCA
CTGTAGGTGGGCTATTAGGGTAGTTTGATGGAAAGCTCATAATGGCATTG
AAAAATCCCCCCTCATAAAGAGTATCAGGTGGTCCAATAATTGTAACACT
CCATTCAAAGATATTTGTCTCATCCACCAACCCGGCAGAAAACCCAGCAA
CAGGGTTCTTACAAAGATCTTTTTAGTTGTTTT
back to top