CN185891

Overview
NameCN185891
Unique NameCN185891
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5924 contig Csv1_Contig5924:98..830. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UB2D2_BOVIN (Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.950e-17
Identity = 46/139 (33.09%), Postives = 70/139 (50.36%), Query Frame = -3
Query:  303 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKK 719
            DL ++P A  SAG V + ++F W  TI+GP D+ Y+GG F   + FP++YP  PP V FTT I+HPN+  +G +C+ IL               +W P  T              PN + P   E A+ ++  R+ + +
Sbjct:   12 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNR 136          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBC1_MAGGR (Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe grisea GN=UBC1 PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 8.443e-17
Identity = 47/147 (31.97%), Postives = 70/147 (47.62%), Query Frame = -3
Query:  279 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRR 719
            DL ++P +  SAG V E ++F W  TI+GP D+ Y GG F   + FP++YP  PP V FTT I+HPN+  +G +C+ IL              ++W P  T              PN + P   E A  ++  R  ++       R+
Sbjct:   12 DLGRDPPSSCSAGPVGE-DLFHWQATIMGPSDSPYAGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILR-------------DQWSPALTISKVLLSICSMLTDPNPDDPLVPEIAHVYKTARAQYESTAREWTRK 144          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBC12_ARATH (Probable ubiquitin-conjugating enzyme E2 12 OS=Arabidopsis thaliana GN=UBC12 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.443e-17
Identity = 45/128 (35.16%), Postives = 61/128 (47.66%), Query Frame = -3
Query:  339 KDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAA 722
            +D+ ++P A  SAG V E +IF W  TI+GP D+ Y GG F   + F S+YP  PP V F T+++HPN+   G +C+ IL              E+W P  T              PN   P   E A
Sbjct:   11 RDMQRHPPANCSAGPVAEEDIFHWQATIMGPHDSPYSGGVFTVSIDFSSDYPFKPPKVNFKTKVYHPNIDSKGSICLDIL-------------KEQWSPAPTTSKVLLSICSLLTDPNPNDPLVPEIA 125          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UB2D4_HUMAN (Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens GN=UBE2D4 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.443e-17
Identity = 46/139 (33.09%), Postives = 70/139 (50.36%), Query Frame = -3
Query:  303 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKK 719
            DL ++P A  SAG V + ++F W  TI+GP D+ Y+GG F   + FP++YP  PP V FTT+I+HPN+  +G +C+ IL               +W P  T              PN + P   E A  ++  R+ + +
Sbjct:   12 DLQRDPPAQCSAGPVGD-DLFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILR-------------SQWSPALTVSKVLLSICSLLCDPNPDDPLVPEIAHTYKADREKYNR 136          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UB2D3_BOVIN (Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.103e-16
Identity = 46/139 (33.09%), Postives = 69/139 (49.64%), Query Frame = -3
Query:  303 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKK 719
            DL ++P A  SAG V + ++F W  TI+GP D+ Y+GG F   + FP++YP  PP V FTT I+HPN+  +  +C+ IL               +W P  T              PN + P   E A+ ++  RD + +
Sbjct:   12 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNDSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNR 136          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBC14_SCHPO (Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccharomyces pombe GN=ubc14 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.440e-16
Identity = 45/139 (32.37%), Postives = 70/139 (50.36%), Query Frame = -3
Query:  303 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKK 719
            DL ++P+      LVD+ N+F W+ T +GP D++Y GG F+  + FP +YP  PPT++FTT I+HPN   +G VC++I            L  + + P                 PN + P     A+++R+ R  F K
Sbjct:   18 DLREHPIPDIRVNLVDD-NLFHWACTALGPSDSVYAGGKFHFSLKFPLDYPFQPPTIEFTTRIYHPNFDSEGNVCLAI------------LKQQVFKPSIKLRSVLEQILQLLREPNPDDPLVASIAEQYRNDRPSFDK 143          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBC9_SCHPO (SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyces pombe GN=hus5 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.881e-16
Identity = 43/123 (34.96%), Postives = 61/123 (49.59%), Query Frame = -3
Query:  297 NIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKV 665
            ++  W V I G P T +EGG +   M+FP  YP  PP  +FT  ++HPNVYP G VC+SIL+             E W P  T +            PN  SPA  EA   ++  + +++K+V
Sbjct:   37 DLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILN-----------EEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRV 148          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBC4_SCHPO (Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe GN=ubc4 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.881e-16
Identity = 47/147 (31.97%), Postives = 70/147 (47.62%), Query Frame = -3
Query:  279 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRR 719
            DL K+P +  SAG V + ++F W  TI+GP D+ Y GG F   + FP++YP  PP V FTT I+HPN+  +G +C+ IL              ++W P  T              PN + P   E A  ++  R  ++       R+
Sbjct:   12 DLGKDPPSSCSAGPVGD-DLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILR-------------DQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHVYKTDRSRYELSAREWTRK 144          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.881e-16
Identity = 48/139 (34.53%), Postives = 67/139 (48.20%), Query Frame = -3
Query:  306 KDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFK 722
            KDL K+P    SAG V E ++F W  TI+GP D+ Y GG F   + FP +YP  PP V F T+++HPNV  +G +C+ IL              E+W P  T              PN + P   E A  ++  R  ++
Sbjct:   11 KDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNVNSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 135          
BLAST of CN185891 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.457e-16
Identity = 46/139 (33.09%), Postives = 68/139 (48.92%), Query Frame = -3
Query:  306 KDLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTAEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFK 722
            KDL K+P    SAG V E ++F W  TI+GP D+ Y GG F   + FP +YP  PP V F T+++HPN+  +G +C+ IL              E+W P  T              PN + P   E A  ++  ++ ++
Sbjct:   11 KDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYE 135          
The following BLAST results are available for this feature:
BLAST of CN185891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
UB2D2_BOVIN4.950e-1733.09Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus G... [more]
UBC1_MAGGR8.443e-1731.97Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnapor... [more]
UBC12_ARATH8.443e-1735.16Probable ubiquitin-conjugating enzyme E2 12 OS=Ara... [more]
UB2D4_HUMAN8.443e-1733.09Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens... [more]
UB2D3_BOVIN1.103e-1633.09Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus G... [more]
UBC14_SCHPO1.440e-1632.37Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccha... [more]
UBC9_SCHPO1.881e-1634.96SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyce... [more]
UBC4_SCHPO1.881e-1631.97Ubiquitin-conjugating enzyme E2 4 OS=Schizosacchar... [more]
UBC28_ARATH1.881e-1634.53Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBC9_ARATH2.457e-1633.09SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002A10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185891 ID=CN185891; Name=CN185891; organism=Citrus sinensis; type=EST; length=733bp
TTTTTTTTTTTTACTTAGAGAACGACAGAACATTTGTGACCAATTTTAAC
CAAAGAACGCTTTTGAATACATGGATGTTCCCCGTCGTTACAGTGACTTG
ACCATGCAGAGAAAACGAGAGAGATGGTTGAGAGAACTTCAAAATGCCAG
TCTACACAAGACCAAGTACCCACAGAACCCAGTTCCCCCCACGCGGTTAA
ATCAAGACATTTCCCGTACAAACACATAGGTAGAGAAAAAAAAGAGTGCC
TGCAGTTGGTTTACAACATTTCTTGTGATCTTCTCACACAGCGGCCTACT
TTCTTCTTGAAGTCATCTCTCCTGTCTCTCCATTCTTTTGCAGCTTCGAC
ATTTGCAGGAGATTCATCATTAGGACTGGAAAGCATTGATATGATACTCA
AAACGATACTTTCAGCAGTATGAACAGGCATCCAGCGCTCACTTGCGAGC
TCATATCCATTAGGGTCGTCACCTGGAGGATGAAGGATTGATATGCAGAC
ACGCCCATCCGGATAGACATTAGGATGCCAAATCTCTGTTGTAAACTTCA
CTGTAGGTGGGCTATTAGGGTAGTTTGATGGAAAGCTCATAATGGCATTG
AAAAATCCCCCCTCATAAAGAGTATCAGGTGGTCCAATAATTGTAACACT
CCATTCAAAGATATTTGTCTCATCCACCAACCCGGCAGAAAACCCAGCAA
CAGGGTTCTTACAAAGATCTTTTTAGTTGTTTT
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