DC900078

Overview
NameDC900078
Unique NameDC900078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length391
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1470 contig Csv1_Contig1470:230..620. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900078 vs. ExPASy Swiss-Prot
Match: NLTP5_VITSX (Non-specific lipid-transfer protein P5 OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.775e-12
Identity = 34/57 (59.65%), Postives = 42/57 (73.68%), Query Frame = 2
Query:    2 NAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRV 172
            N+A +T DR+T C CL  A   IS   +  GLAAGLPGKCG+NIPY+ISPST+C +V
Sbjct:   36 NSAATTQDRRTACKCLINASKSISGVNF--GLAAGLPGKCGVNIPYKISPSTNCDQV 90          
BLAST of DC900078 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLCI (Non-specific lipid-transfer protein 2 OS=Solanum chilense PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.775e-12
Identity = 34/56 (60.71%), Postives = 40/56 (71.43%), Query Frame = 2
Query:    8 ARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 175
            A++T DRQ  C CLK A S  S+T   LG AA LP  C +NIPY+ISPSTDCS+VQ
Sbjct:   61 AQTTVDRQAACACLKSAAS--SFTDLDLGKAASLPSTCNVNIPYKISPSTDCSKVQ 114          
BLAST of DC900078 vs. ExPASy Swiss-Prot
Match: NLTP_MAIZE (Non-specific lipid-transfer protein OS=Zea mays PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.319e-12
Identity = 34/57 (59.65%), Postives = 41/57 (71.93%), Query Frame = 2
Query:    2 NAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRV 172
            NAAR+TADR+  C CLK A +G+S      G AA +P KCG++IPY IS STDCSRV
Sbjct:   65 NAARTTADRRAACNCLKNAAAGVS--GLNAGNAASIPSKCGVSIPYTISTSTDCSRV 119          
BLAST of DC900078 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.028e-12
Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = 2
Query:    2 NAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 175
            +AA++T DRQ  C CLK A + IS      G AA  PGKCG++IPY+ISPSTDCS+VQ
Sbjct:   61 SAAKTTPDRQAACGCLKSAYNSISGVN--AGNAASFPGKCGVSIPYKISPSTDCSKVQ 116          
BLAST of DC900078 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLPN (Non-specific lipid-transfer protein 1 OS=Solanum pennellii GN=LTP1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.151e-11
Identity = 33/57 (57.89%), Postives = 41/57 (71.93%), Query Frame = 2
Query:    5 AARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 175
            +A++TADR+T CTCLK A + I      L  AAG+P  C +NIPY+ISPSTDCS VQ
Sbjct:   60 SAKTTADRKTACTCLKSAANAIK--GIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of DC900078 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLLC (Non-specific lipid-transfer protein 1 OS=Solanum lycopersicum GN=TSW12 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.151e-11
Identity = 33/57 (57.89%), Postives = 41/57 (71.93%), Query Frame = 2
Query:    5 AARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 175
            +A++TADR+T CTCLK A + I      L  AAG+P  C +NIPY+ISPSTDCS VQ
Sbjct:   60 SAKTTADRKTACTCLKSAANAIK--GIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of DC900078 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.503e-11
Identity = 33/61 (54.10%), Postives = 44/61 (72.13%), Query Frame = 2
Query:    2 NAARSTADRQTVCTCLKQ---AVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 175
            N A++TADRQT C CLKQ   +V G++        AA LPGKCG+N+PY+ISPST+C+ V+
Sbjct:   62 NLAKTTADRQTACNCLKQLSASVPGVNANN-----AAALPGKCGVNVPYKISPSTNCATVK 117          
BLAST of DC900078 vs. ExPASy Swiss-Prot
Match: NLTP1_SORBI (Non-specific lipid-transfer protein 1 OS=Sorghum bicolor GN=LTP1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.503e-11
Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 2
Query:    2 NAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRV 172
            +AAR+TADR+  C CLK A  GIS      G AA +P KCG+++PY IS STDCSRV
Sbjct:   63 SAARTTADRRAACNCLKNAARGIS--GLNAGNAASIPSKCGVSVPYTISTSTDCSRV 117          
BLAST of DC900078 vs. ExPASy Swiss-Prot
Match: NLTP2_SORBI (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor GN=LTP2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.963e-11
Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 2
Query:    2 NAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRV 172
            +AAR+TADR+  C CLK A  GI      +G AA +P KCG++IPY IS STDCSRV
Sbjct:   67 SAARTTADRRAACNCLKNAARGIR--GLNVGKAASIPSKCGVSIPYTISTSTDCSRV 121          
BLAST of DC900078 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.563e-11
Identity = 34/61 (55.74%), Postives = 42/61 (68.85%), Query Frame = 2
Query:    2 NAARSTADRQTVCTCLKQ---AVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 175
            N AR+T DRQ  C CLKQ   +V G++        AA LPGKCG+NIPYQISPST+C+ V+
Sbjct:   62 NLARTTPDRQAACNCLKQLSASVPGVNPNN-----AAALPGKCGVNIPYQISPSTNCANVK 117          
The following BLAST results are available for this feature:
BLAST of DC900078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
NLTP5_VITSX1.775e-1259.65Non-specific lipid-transfer protein P5 OS=Vitis sp... [more]
NLTP2_SOLCI1.775e-1260.71Non-specific lipid-transfer protein 2 OS=Solanum c... [more]
NLTP_MAIZE2.319e-1259.65Non-specific lipid-transfer protein OS=Zea mays PE... [more]
NLTP_HELAN3.028e-1258.62Non-specific lipid-transfer protein OS=Helianthus ... [more]
NLTP1_SOLPN1.151e-1157.89Non-specific lipid-transfer protein 1 OS=Solanum p... [more]
NLTP1_SOLLC1.151e-1157.89Non-specific lipid-transfer protein 1 OS=Solanum l... [more]
NLTP_PRUAV1.503e-1154.10Non-specific lipid-transfer protein OS=Prunus aviu... [more]
NLTP1_SORBI1.503e-1157.89Non-specific lipid-transfer protein 1 OS=Sorghum b... [more]
NLTP2_SORBI1.963e-1157.89Non-specific lipid-transfer protein 2 OS=Sorghum b... [more]
NLTP1_PRUDU2.563e-1155.74Non-specific lipid-transfer protein 1 OS=Prunus du... [more]

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Properties
Property NameValue
Genbank descriptionDC900078 VSS Citrus sinensis cDNA clone VS27Q84 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900078 ID=DC900078; Name=DC900078; organism=Citrus sinensis; type=EST; length=391bp
CAATGCCGCTCGGTCCACAGCTGACCGTCAGACCGTGTGTACGTGCTTGA
AACAAGCTGTCAGTGGAATCTCGTACACCAGGTACCAGCTCGGACTCGCA
GCTGGACTTCCCGGCAAATGTGGACTCAACATTCCTTACCAGATCAGCCC
TTCTACTGACTGCAGCAGGGTGCAGTGAGAATGATGAACTAGTAGCCATC
AGTTATGACGCTGTGTGCTTGGATAATTAAGCATGGGGTGAGAGAATAAG
AGTGCTGCGCTTCTGTTTGATGGTGTGTTAGTGTTAAATAGAAGTTGTTA
GCGTCATCTGGTGGGATTTATGTTGTCTCATGTTTTGTTAGGTTCTGTCC
CAACCATAAGTACTAAAGAATAAGATTTTGTAAGTTACGTT
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