CN185888

Overview
NameCN185888
Unique NameCN185888
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185888 vs. ExPASy Swiss-Prot
Match: XTH29_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 29 OS=Arabidopsis thaliana GN=XTH29 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.021e-19
Identity = 62/155 (40.00%), Postives = 83/155 (53.55%), Query Frame = 3
Query:  246 DSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGD---KSQDEIDFEFLGK---DKTIVQTNYYTTGTGNR--EEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNE--GEGFPNKPMFLYASVWDAS 680
            D  S+ L  D   G+ + S++ + +G FSSLI+ P   T+G+    Y S+  GD   K  DE+D EFLG         QTN Y  G+ NR  EE + L FD S+ FH Y I W P  I + +D   +R   R E     +P KPM LYA++WDAS
Sbjct:   58 DDRSVRLLLDKYTGSGFISSSMYQHGFFSSLIKLPGAYTAGIVVAFYTSN--GDVFVKDHDELDIEFLGNLEGKPWRFQTNMYGNGSTNRGREERYRLWFDPSKEFHRYSILWTPTKIIFWVDDVPIREILRKEEMNGDYPQKPMSLYATIWDAS 210          
BLAST of CN185888 vs. ExPASy Swiss-Prot
Match: GUB_ORPSP (Beta-glucanase OS=Orpinomyces sp. (strain PC-2) GN=licA PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.021e-19
Identity = 58/162 (35.80%), Postives = 78/162 (48.15%), Query Frame = 3
Query:  246 DSNSITLTFDHRGGA----RWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKPMFLYASVWDASHIDKARWCGPYVG 719
            ++  + LT D  G       +R+   + YG F   ++  K      +F  Y    +G K  DEID EFLG D T VQ NYYT G G+ E IH LGFD S+GFH Y   W  + I W +DG  V  A  N     P+ P  +  + W+   +D   W  P+ G
Sbjct:   73 ENGKLKLTIDRDGSGYTCGEYRTKNYYGYGMFQVNMKPIKNPGVVSSFFTYTGPSDGTK-WDEIDIEFLGYDTTKVQFNYYTNGQGHHEHIHYLGFDASQGFHTYGFFWARNSITWYVDGTAVYTAYDN----IPDTPGKIMMNAWNGIGVDD--WLRPFNG 227          
BLAST of CN185888 vs. ExPASy Swiss-Prot
Match: XTH1_SOLLC (Probable xyloglucan endotransglucosylase/hydrolase 1 OS=Solanum lycopersicum GN=XTH1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.178e-18
Identity = 58/158 (36.71%), Postives = 87/158 (55.06%), Query Frame = 3
Query:  264 LTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVR--RAERNEGEGFP-NKPMFLYASVWDASH------IDKARW 701
            L  D   GA ++S   +L+G FS  ++   G+++G+    YLSS   +   DEIDFEFLG       I+QTN +T G GNRE+   L FD ++G+H Y + W   LI   +D   +R  +  ++ G  FP N+PM +Y+S+WDA        ++K  W
Sbjct:   57 LILDRSSGAGFQSKKSYLFGHFSMKMRLVGGDSAGVVTAFYLSS--NNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGNREQRIYLWFDPTKGYHSYSVLWNTYLIVIFVDDVPIRAFKNSKDLGVKFPFNQPMKIYSSLWDADDWATRGGLEKTNW 212          
BLAST of CN185888 vs. ExPASy Swiss-Prot
Match: XYND_RUMFL (Xylanase/beta-glucanase OS=Ruminococcus flavefaciens GN=xynD PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.539e-18
Identity = 49/135 (36.30%), Postives = 70/135 (51.85%), Query Frame = 3
Query:  285 GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKPMFLYASVWDASHID 689
            G  +R+   + YG +   +Q  K +    +F  Y    + D   DEID E LGK+ T VQ NYYT G G  E+++DLGFD SE +H Y   W P+ I W +DG+ V RA ++     P  P  +  + W    +D
Sbjct:  636 GGEFRTNNFYHYGYYECSMQAMKNDGVVSSFFTYTGPSD-DNPWDEIDIEILGKNTTQVQFNYYTNGQGKHEKLYDLGFDSSEAYHTYGFDWQPNYIAWYVDGREVYRATQD----IPKTPGKIMMNAWPGLTVD 765          
BLAST of CN185888 vs. ExPASy Swiss-Prot
Match: GUB_CLOTH (Beta-glucanase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=licB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.539e-18
Identity = 54/151 (35.76%), Postives = 79/151 (52.32%), Query Frame = 3
Query:  267 TFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKPMFLYASVWDASHIDKARWCGPYVG 719
            ++ ++ G  +R+ + F YG +   ++  K      +F  Y    + +   DEID EFLGKD T VQ N+Y  G G  E +H+LGFD S+ FH Y  +W PD I + +DGK V R  RN     P  P  +  ++W    +D+  W G Y G
Sbjct:   87 SYPYKSG-EYRTKSFFGYGYYEVRMKAAKNVGIVSSFFTYTGPSDNNP-WDEIDIEFLGKDTTKVQFNWYKNGVGGNEYLHNLGFDASQDFHTYGFEWRPDYIDFYVDGKKVYRGTRN----IPVTPGKIMMNLWPGIGVDE--WLGRYDG 229          
BLAST of CN185888 vs. ExPASy Swiss-Prot
Match: GUB_BACLI (Beta-glucanase OS=Bacillus licheniformis GN=bg1 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.539e-18
Identity = 51/141 (36.17%), Postives = 73/141 (51.77%), Query Frame = 3
Query:  297 RSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKPMFLYASVWDASHIDKARWCGPYVG 719
            RS   + YG +   ++  K      +F  Y    +G    DEID EFLGKD T VQ NYYT G GN E+I +LGFD +  +H Y   W P+ I+W +DG++   A        P  P  +  ++W+ + +D+  W G Y G
Sbjct:   94 RSVQTYGYGLYEVNMKPAKNVGIVSSFFTYTGPTDGTP-WDEIDIEFLGKDTTKVQFNYYTNGVGNHEKIVNLGFDAANSYHTYAFDWQPNSIKWYVDGQLKHTATTQ----IPQTPGKIMMNLWNGAGVDE--WLGSYNG 227          
BLAST of CN185888 vs. ExPASy Swiss-Prot
Match: XTH8_ORYSJ (Xyloglucan endotransglycosylase/hydrolase protein 8 OS=Oryza sativa subsp. japonica GN=XTH8 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.010e-18
Identity = 53/149 (35.57%), Postives = 82/149 (55.03%), Query Frame = 3
Query:  249 SNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFP-NKPMFLYASVWDASH 683
            +  + LT D   G+ + S   +L+G FS  ++   GN++G   + YLSS EGD   DEID EF+G    +  ++ TN +  G G +E    L FD +  FH Y I W P  I + +D   VR  ++ +   +P +KPM L+A++WD S+
Sbjct:   50 TQQVALTLDRSSGSGFTSKDTYLFGEFSVQMKLVGGNSAGTVTSFYLSSGEGD-GHDEIDIEFMGNLSGNPYVMNTNVWANGDGKKEHQFYLWFDPTADFHTYKIIWNPQNIIFQVDDVPVRTFKKYDDLAYPQSKPMRLHATLWDGSY 197          
BLAST of CN185888 vs. ExPASy Swiss-Prot
Match: XTH12_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 12 OS=Arabidopsis thaliana GN=XTH12 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.010e-18
Identity = 55/146 (37.67%), Postives = 82/146 (56.16%), Query Frame = 3
Query:  258 ITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEG--FP-NKPMFLYASVWDA 677
            +T T D   G+ ++S   +L+G     I+   GN++G     YLSS    ++ DEIDFEFLG       ++ TN +T G GNRE    L FD +  FH Y + W P  I +L+DG  +R  + NE  G  +P ++PM +Y+S+W+A
Sbjct:   49 LTCTLDKTSGSGFQSKKEYLFGKIDMKIKLVPGNSAGTVTAYYLSSK--GETWDEIDFEFLGNVTGQPYVIHTNVFTGGKGNREMQFYLWFDPTADFHTYTVLWNPLNIIFLVDGIPIRVFKNNEANGVAYPKSQPMKIYSSLWEA 192          
BLAST of CN185888 vs. ExPASy Swiss-Prot
Match: BRU1_SOYBN (Brassinosteroid-regulated protein BRU1 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.010e-18
Identity = 55/146 (37.67%), Postives = 81/146 (55.48%), Query Frame = 3
Query:  258 ITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFP---NKPMFLYASVWDA 677
            ++L+ D   G+ ++S   +L+G     ++   GN++G     YLSS     + DEIDFEFLG    D  I+ TN +T G GNRE+   L FD +  FH Y I W P  I +L+D   +R  +  E  G P   N+PM +Y+S+W+A
Sbjct:   54 LSLSLDKVSGSGFKSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQ--GPTHDEIDFEFLGNLSGDPYILHTNIFTQGKGNREQQFYLWFDPTRNFHTYSIIWKPQHIIFLVDNTPIRVFKNAEPLGVPFPKNQPMRIYSSLWNA 197          
BLAST of CN185888 vs. ExPASy Swiss-Prot
Match: XTH_TOBAC (Probable xyloglucan endotransglucosylase/hydrolase protein OS=Nicotiana tabacum GN=XTH PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.625e-18
Identity = 57/165 (34.55%), Postives = 91/165 (55.15%), Query Frame = 3
Query:  213 DYTPEACTH----CADSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVR--RAERNEGEGFP-NKPMFLYASVWDA 677
            +Y P   +H     +  +++ L  D   GA ++S   +L+G FS  ++   G+++G+    YLSS   +   DEIDFEFLG       I+QTN +T G G+RE+   L FD ++G+H Y + W    I   +D   +R  +  ++ G  FP N+PM +Y+S+WDA
Sbjct:   35 NYEPSWASHHIKYLSGGSTVDLVLDRSSGAGFQSKKSYLFGHFSMKLKLVGGDSAGVVTAFYLSS--NNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKGYHSYSVLWNTFQIVIFVDDVPIRAFKNSKDLGVKFPFNQPMKIYSSLWDA 197          
The following BLAST results are available for this feature:
BLAST of CN185888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
XTH29_ARATH9.021e-1940.00Probable xyloglucan endotransglucosylase/hydrolase... [more]
GUB_ORPSP9.021e-1935.80Beta-glucanase OS=Orpinomyces sp. (strain PC-2) GN... [more]
XTH1_SOLLC1.178e-1836.71Probable xyloglucan endotransglucosylase/hydrolase... [more]
XYND_RUMFL1.539e-1836.30Xylanase/beta-glucanase OS=Ruminococcus flavefacie... [more]
GUB_CLOTH1.539e-1835.76Beta-glucanase OS=Clostridium thermocellum (strain... [more]
GUB_BACLI1.539e-1836.17Beta-glucanase OS=Bacillus licheniformis GN=bg1 PE... [more]
XTH8_ORYSJ2.010e-1835.57Xyloglucan endotransglycosylase/hydrolase protein ... [more]
XTH12_ARATH2.010e-1837.67Probable xyloglucan endotransglucosylase/hydrolase... [more]
BRU1_SOYBN2.010e-1837.67Brassinosteroid-regulated protein BRU1 OS=Glycine ... [more]
XTH_TOBAC2.625e-1834.55Probable xyloglucan endotransglucosylase/hydrolase... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002A08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185888 ID=CN185888; Name=CN185888; organism=Citrus sinensis; type=EST; length=732bp
GAGGGGCAAGGCCCGTGAATCGTTTTTAGAAATGCTTAGGAGCAGTGGGC
TCACTGTAAAAAGTCTGGTTTCTCCTTCAGTTGACTTCACTTTCTTTCTT
CCGTAAATTGAAATCGGTAAGCAGCAATTCTGTCGTGACCCTTGAACTTG
AAATGGCGGATCCAGTTGTCCAGAGTCTCCATCAAACTGAACCCATAAAA
GAAATCGCCATAGATTACACCCCGGAAGCATGCACTCACTGCGCAGACTC
CAATTCGATCACACTCACCTTCGATCACCGCGGCGGAGCCAGGTGGCGCT
CCACCACTCGCTTCCTCTACGGCACCTTCAGCTCCCTGATCCAGTGCCCC
AAAGGCAACACTAGTGGCCTCAACTTCAACATCTACCTTTCTTCTCTAGA
AGGCGACAAATCCCAAGACGAAATCGACTTTGAATTCCTTGGCAAGGACA
AGACTATCGTTCAAACCAATTATTACACTACAGGAACCGGGAATAGAGAG
GAGATTCATGATCTGGGGTTCGATTGTTCTGAAGGATTTCATGAGTACGT
GATCAAGTGGGGTCCAGATTTGATCCAGTGGTTGATTGATGGGAAGGTGG
TGAGGAGAGCTGAGAGGAACGAGGGTGAGGGGTTTCCCAATAAACCAATG
TTTTTGTATGCTTCAGTTTGGGATGCTAGCCACATTGATAAGGCCAGGTG
GTGTGGGCCCTACGTGGGCTGTGATGCACCTT
back to top