CN185888

Overview
NameCN185888
Unique NameCN185888
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185888 vs. ExPASy Swiss-Prot
Match: XTH9_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 9 OS=Arabidopsis thaliana GN=XTH9 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.428e-18
Identity = 54/157 (34.39%), Postives = 87/157 (55.41%), Query Frame = 3
Query:  228 ACTHCADSNSIT-LTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFP---NKPMFLYASVWDA 677
            A  HC +   +T L  D+  GA + S +++L+G  S  I+  +G+++G     Y+SS     + +E DFEFLG    +  IVQTN Y  G GNRE+  +L FD +  FH Y I W    + +++D   +R  +  E +G P   ++ M +Y+S+W+A
Sbjct:   38 AMDHCVNEGEVTKLKLDNYSGAGFESRSKYLFGKVSIQIKLVEGDSAGTVTAFYMSS--DGPNHNEFDFEFLGNTTGEPYIVQTNIYVNGVGNREQRLNLWFDPTTEFHTYSILWSKRSVVFMVDETPIRVQKNLEEKGIPFAKDQAMGVYSSIWNA 192          
BLAST of CN185888 vs. ExPASy Swiss-Prot
Match: XTH10_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 10 OS=Arabidopsis thaliana GN=XTH10 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.847e-18
Identity = 65/187 (34.76%), Postives = 92/187 (49.20%), Query Frame = 3
Query:  198 KEIAIDYTPEACTHCADSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGE---GFPN-KPMFLYASVWDASH------IDKARWC-GPYV 716
            K+  + ++P       D  S TL  D   GA + S   FL+G     I+  +G++ G     Y+SS     ++DEIDFEFLG       I+QTN Y  G  NREE   L FD ++ FH Y I W    I +++D ++  R  RN GE    +P  +PM + AS+W+          DK  W  GP+V
Sbjct:   39 KDFFVTWSPTHVNTSNDGRSRTLKLDQESGASFSSIQTFLFGQIDMKIKLIRGSSQGTVVAYYMSS--DQPNRDEIDFEFLGNVNGQPYILQTNVYAEGLDNREERIHLWFDPAKDFHTYSILWNIHQIVFMVD-QIPIRLYRNHGEKGVAYPRLQPMSVQASLWNGESWATRGGHDKIDWSKGPFV 222          
BLAST of CN185888 vs. ExPASy Swiss-Prot
Match: GUB_BREBE (Beta-glucanase OS=Brevibacillus brevis GN=bglBB PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.847e-18
Identity = 51/146 (34.93%), Postives = 72/146 (49.32%), Query Frame = 3
Query:  297 RSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQ-DEIDFEFLGKDKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKPMFLYASVWDASHIDKARWCGPYVGCDAP 731
            R+   + YG F   ++  K   +  +F  Y    + D    DEID EFLGKD T +Q NY+T G G  E  +DLGFD SE F+ Y  +W  D I W ++G+ V  A  N     P  P  +  ++W    +D   W G + G + P
Sbjct:  100 RTNDFYHYGLFEVSMKPAKVEGTVSSFFTYTGEWDWDGDPWDEIDIEFLGKDTTRIQFNYFTNGVGGNEFYYDLGFDASESFNTYAFEWREDSITWYVNGEAVHTATEN----IPQTPQKIMMNLWPGVGVD--GWTGVFDGDNTP 239          
BLAST of CN185888 vs. ExPASy Swiss-Prot
Match: XTH31_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 31 OS=Arabidopsis thaliana GN=XTH31 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 9.974e-18
Identity = 52/154 (33.77%), Postives = 82/154 (53.25%), Query Frame = 3
Query:  246 DSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSS-LEGDKSQDEIDFEFLGKDKT---IVQTNYYTTGTGNREEI-----HDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKPMFLYASVWDAS 680
            + + +TL  D   G+ ++S   +  G F + I+   G T+G++ ++YLS+  E     DE+D EFLG        +QTN +  G+G+R  I       L FD ++ FH Y I W P+ I + +D   +R   R     FP +PM++Y S+WDAS
Sbjct:   55 EQDVVTLWLDKSTGSGFKSLRPYRSGYFGASIKLQPGFTAGVDTSLYLSNNQEHPGDHDEVDIEFLGTTPGKPYSLQTNVFVRGSGDRNVIGREMKFTLWFDPTQDFHHYAILWNPNQIVFFVDDVPIRTYNRKNEAIFPTRPMWVYGSIWDAS 208          
BLAST of CN185888 vs. ExPASy Swiss-Prot
Match: GUB_CLOTM (Beta-glucanase OS=Clostridium thermocellum GN=licB PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.974e-18
Identity = 53/151 (35.10%), Postives = 77/151 (50.99%), Query Frame = 3
Query:  267 TFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKPMFLYASVWDASHIDKARWCGPYVG 719
            ++ ++ G  +RS + F YG +   ++  K      +F  Y    + +   DEID EFLGKD T  Q N+Y    G  E +H+LGFD S+ FH Y  +W PD I + +DGK V R  RN     P  P  +  ++W    +D+  W G Y G
Sbjct:   87 SYPYKSG-EYRSKSFFGYGYYEVRMKAAKNVGIVSSFFTYTGPSDNNP-WDEIDIEFLGKDTTKAQFNWYKNEVGGNEYLHNLGFDASQDFHTYGFEWRPDYIDFYVDGKKVYRGTRN----IPVTPGKIMMNLWPGKGVDE--WLGRYDG 229          
BLAST of CN185888 vs. ExPASy Swiss-Prot
Match: XTH3_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 3 OS=Arabidopsis thaliana GN=XTH3 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.303e-17
Identity = 51/142 (35.92%), Postives = 74/142 (52.11%), Query Frame = 3
Query:  258 ITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDK---TIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKPMFLYASVWD 674
            + L  D   G  + S   +  G F   I+ P GNT G+    YL+S  G    DEIDFEFLG +      +QTN +  G GNREE   L F+ ++ +H Y + W P  I + +D   +R  +   G  +P+KPM + AS+W+
Sbjct:   57 VDLYMDQSSGGGFESKDAYGSGLFEMRIKVPSGNTGGIVTAFYLTSKGG--GHDEIDFEFLGNNNGKPVTLQTNLFLNGEGNREERFLLWFNPTKHYHTYGLLWNPYQIVFYVDNIPIRVYKNENGVSYPSKPMQVEASLWN 196          
BLAST of CN185888 vs. ExPASy Swiss-Prot
Match: XTH33_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 33 OS=Arabidopsis thaliana GN=XTH33 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.303e-17
Identity = 58/148 (39.19%), Postives = 78/148 (52.70%), Query Frame = 3
Query:  264 LTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEG-DKSQDEIDFEFLG---KDKTIVQTNYYTTGT--GNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEG---EGFPNKPMFLYASVWDAS 680
            LT D   GA   S  ++ YG FS+ ++ P G  SG+    YLS+ E   KS DEID E LG   +D   +QTN Y  G+    REE     FD ++ FH+Y + W      +L+D   VR+   N G     +P+KPM LY +VWD S
Sbjct:   65 LTLDKSSGAGLVSKNKYHYGFFSARLKLPAGFASGVVVAFYLSNAETYPKSHDEIDIELLGRSRRDDWTIQTNVYANGSTRTGREEKFYFWFDPTQAFHDYTLIWNSHHTVFLVDNIPVRQFP-NRGAFTSAYPSKPMSLYVTVWDGS 211          
BLAST of CN185888 vs. ExPASy Swiss-Prot
Match: XTH13_ARATH (Putative xyloglucan endotransglucosylase/hydrolase protein 13 OS=Arabidopsis thaliana GN=XTH13 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.303e-17
Identity = 54/146 (36.99%), Postives = 82/146 (56.16%), Query Frame = 3
Query:  258 ITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEG--FP-NKPMFLYASVWDA 677
            +T T D   G+ ++S   +L+G     ++   GN++G     YLSS    ++ DEIDFEFLG       ++ TN +T G GNRE    L FD +  FH Y + W P  I +L+DG  +R  + NE  G  +P ++PM +Y+S+W+A
Sbjct:   48 LTCTLDKISGSGFQSKKEYLFGKIDMKMKLVAGNSAGTVTAYYLSSK--GETWDEIDFEFLGNVTGQPYVLHTNVFTGGKGNREMQFYLWFDPTADFHTYTVLWNPLNIIFLVDGIPIRVFKNNEANGVAYPKSQPMKIYSSLWEA 191          
BLAST of CN185888 vs. ExPASy Swiss-Prot
Match: XTH5_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 5 OS=Arabidopsis thaliana GN=XTH5 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17
Identity = 56/162 (34.57%), Postives = 87/162 (53.70%), Query Frame = 3
Query:  252 NSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVR--RAERNEGEGFP-NKPMFLYASVWDASH------IDKARW 701
            + + L  D   G  ++S   +L+G FS  I+   G+++G     YLSS   +   DEIDFEFLG       I+QTN +T G GNRE+  +L FD S+ +H Y + W    I + +D   +R  +  ++ G  FP N+PM +Y+S+W+A        ++K  W
Sbjct:   52 SEVHLVLDKYTGTGFQSKGSYLFGHFSMHIKMVAGDSAGTVTAFYLSSQNSE--HDEIDFEFLGNRTGQPYILQTNVFTGGAGNREQRINLWFDPSKDYHSYSVLWNMYQIVFFVDDVPIRVFKNSKDVGVKFPFNQPMKIYSSLWNADDWATRGGLEKTNW 211          
BLAST of CN185888 vs. ExPASy Swiss-Prot
Match: XTH16_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 16 OS=Arabidopsis thaliana GN=XTH16 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.902e-17
Identity = 52/146 (35.62%), Postives = 82/146 (56.16%), Query Frame = 3
Query:  258 ITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKT---IVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFP---NKPMFLYASVWDA 677
            ++L+ D   G+ ++S   +L+G     ++   GN++G     YLSS EG  + DEIDFEFLG +     ++ TN +  G GNRE+   L FD ++ FH Y + W P  I +++D   +R     E  G P   N+PM +Y+S+W+A
Sbjct:   49 LSLSLDRVSGSGFKSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSS-EGP-THDEIDFEFLGNETGKPYVLHTNVFAQGKGNREQQFYLWFDPTKNFHTYSLVWRPQHIIFMVDNVPIRVFNNAEQLGVPFPKNQPMKIYSSLWNA 192          
The following BLAST results are available for this feature:
BLAST of CN185888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
XTH9_ARATH3.428e-1834.39Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH10_ARATH5.847e-1834.76Probable xyloglucan endotransglucosylase/hydrolase... [more]
GUB_BREBE5.847e-1834.93Beta-glucanase OS=Brevibacillus brevis GN=bglBB PE... [more]
XTH31_ARATH9.974e-1833.77Probable xyloglucan endotransglucosylase/hydrolase... [more]
GUB_CLOTM9.974e-1835.10Beta-glucanase OS=Clostridium thermocellum GN=licB... [more]
XTH3_ARATH1.303e-1735.92Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH33_ARATH1.303e-1739.19Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH13_ARATH1.303e-1736.99Putative xyloglucan endotransglucosylase/hydrolase... [more]
XTH5_ARATH2.222e-1734.57Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH16_ARATH2.902e-1735.62Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002A08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185888 ID=CN185888; Name=CN185888; organism=Citrus sinensis; type=EST; length=732bp
GAGGGGCAAGGCCCGTGAATCGTTTTTAGAAATGCTTAGGAGCAGTGGGC
TCACTGTAAAAAGTCTGGTTTCTCCTTCAGTTGACTTCACTTTCTTTCTT
CCGTAAATTGAAATCGGTAAGCAGCAATTCTGTCGTGACCCTTGAACTTG
AAATGGCGGATCCAGTTGTCCAGAGTCTCCATCAAACTGAACCCATAAAA
GAAATCGCCATAGATTACACCCCGGAAGCATGCACTCACTGCGCAGACTC
CAATTCGATCACACTCACCTTCGATCACCGCGGCGGAGCCAGGTGGCGCT
CCACCACTCGCTTCCTCTACGGCACCTTCAGCTCCCTGATCCAGTGCCCC
AAAGGCAACACTAGTGGCCTCAACTTCAACATCTACCTTTCTTCTCTAGA
AGGCGACAAATCCCAAGACGAAATCGACTTTGAATTCCTTGGCAAGGACA
AGACTATCGTTCAAACCAATTATTACACTACAGGAACCGGGAATAGAGAG
GAGATTCATGATCTGGGGTTCGATTGTTCTGAAGGATTTCATGAGTACGT
GATCAAGTGGGGTCCAGATTTGATCCAGTGGTTGATTGATGGGAAGGTGG
TGAGGAGAGCTGAGAGGAACGAGGGTGAGGGGTTTCCCAATAAACCAATG
TTTTTGTATGCTTCAGTTTGGGATGCTAGCCACATTGATAAGGCCAGGTG
GTGTGGGCCCTACGTGGGCTGTGATGCACCTT
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