CN185888

Overview
NameCN185888
Unique NameCN185888
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185888 vs. ExPASy Swiss-Prot
Match: XTHB_PHAAN (Probable xyloglucan endotransglucosylase/hydrolase protein B OS=Phaseolus angularis GN=XTHB PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.122e-14
Identity = 59/181 (32.60%), Postives = 91/181 (50.28%), Query Frame = 3
Query:  252 NSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGK---DKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVR--RAERNEGEGFP-NKPMFLYASVWDASH------IDKARWC-GPYV---------GCDA 728
            + I L  D   G  +++   +L+G FS  I+   G+++G      LSS   +   DEIDFEFLG       I+QTN +T G G+RE+   L FD ++ +H Y + W    I +L+D   +R  +  +  G  FP N+PM +Y S+W+A        ++K  W   P+V         GC+A
Sbjct:   52 SEIQLHLDKYTGTGFQTKGSYLFGHFSMNIKMVPGDSAGTVTAFCLSSQNAE--HDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKAYHRYSVLWNMYQIVFLVDNIPIRVFKNLKELGVKFPFNQPMKVYNSLWNADDWATRGGLEKTDWSKAPFVAEYKGFHVDGCEA 230          
BLAST of CN185888 vs. ExPASy Swiss-Prot
Match: CRH1_YEAST (Probable glycosidase CRH1 OS=Saccharomyces cerevisiae GN=CRH1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.947e-13
Identity = 46/145 (31.72%), Postives = 69/145 (47.59%), Query Frame = 3
Query:  297 RSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQTNYYTTG---TGNREEIHDLGFDC-SEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKPMFLYASVWDASHIDKA----RWCG 707
            +S    +YG    +++   G  +G+  + YL S       DEID E++G D T  Q+N+++ G   T +R E H  G D  ++ FH Y + W  D   W +DG+ VR       EG+P  PM+L   +W     D A     W G
Sbjct:   99 KSNFYIMYGKLEVILKAANG--TGIVSSFYLQS----DDLDEIDIEWVGGDNTQFQSNFFSKGDTTTYDRGEFH--GVDTPTDKFHNYTLDWAMDKTTWYLDGESVRVLSNTSSEGYPQSPMYLMMGIWAGGDPDNAAGTIEWAG 235          
BLAST of CN185888 vs. ExPASy Swiss-Prot
Match: CRR1_ASHGO (Probable glycosidase CRR1 OS=Ashbya gossypii GN=CRR1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.262e-12
Identity = 47/154 (30.52%), Postives = 75/154 (48.70%), Query Frame = 3
Query:  285 GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQTNYYTTGTGNREEI--HDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEG-------EGFPNKPMFLYASVWDASHIDKAR----WCG 707
            G+   S+  FLYG  +  ++  +G    +   +++SS     +QDEID+EF+G +   VQTNYY  G  N   +  H L  +  E +H Y + W  + I W++DG++VR   + +          +P  PM L  S+W A   D  +    W G
Sbjct:  186 GSLISSSKVFLYGRAAVTMKTSRG-PGVITAIVFMSS-----TQDEIDYEFVGSELHTVQTNYYYQGELNHSRMRRHSLPSNSHEEYHIYEVDWDAERIHWMVDGEIVRTLYKRDTWDPVHKIYKYPQTPMMLQISLWPAGTPDAPQGTIEWAG 333          
BLAST of CN185888 vs. ExPASy Swiss-Prot
Match: XTH11_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 11 OS=Arabidopsis thaliana GN=XTH11 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 45/159 (28.30%), Postives = 81/159 (50.94%), Query Frame = 3
Query:  249 SNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKT--IVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPN-KPMFLYASVWDASHIDKARWCGPYV 716
            ++ + LT D   G+ + S   +  G F+  I+ P+  ++G+  + YL S       DE+ F+ LGK+    ++ TN Y  G G +++   L FD ++ +H Y   W P+ + + +D   +R   +N    +P+ + MFL  SV + S ID  +   PY+
Sbjct:   42 TSELQLTLDKNSGSGFESQLIYGSGYFNVRIKAPQTTSTGVITSFYLISRSS--RHDELCFQILGKNGPPYLLNTNMYLYGEGGKDQRFRLWFDPTKDYHSYSFLWNPNQLVFYVDDTPIRVYSKNPDVYYPSVQTMFLMGSVQNGSIIDPKQM--PYI 196          
BLAST of CN185888 vs. ExPASy Swiss-Prot
Match: CRR1_YEAST (Probable glycosidase CRR1 OS=Saccharomyces cerevisiae GN=CRR1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11
Identity = 54/164 (32.93%), Postives = 76/164 (46.34%), Query Frame = 3
Query:  213 DYTPEACTHC-ADSNSITLTFDHRG-GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQTNYYTTG--TGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAER-------NEGEGFPNKPMFLYASVW 671
            D+T    T   A S +I L    +  G+   ST  FLYG  S  ++     + G+     L+S  GD    EIDFE+LG D    Q+NYY+ G     R +   +G D    +H Y I W PD I W +DGK+ R   +       ++   +P  PM L  +VW
Sbjct:  152 DFTHSGYTSIEASSGNIVLAMPKKTTGSLITSTRSFLYGKAS--VRMKTARSRGVVTAFDLTSAIGD----EIDFEWLGGDLMTAQSNYYSQGHLDYTRMQRFPVGADTWATYHTYEIDWDPDRIIWYVDGKIARTVLKKDTWDPISKEYRYPQTPMRLEIAVW 309          
BLAST of CN185888 vs. ExPASy Swiss-Prot
Match: EXOK_RHIME (Endo-1,3-1,4-beta-glycanase exoK OS=Rhizobium meliloti GN=exoK PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 43/137 (31.39%), Postives = 69/137 (50.36%), Query Frame = 3
Query:  309 RFLYGTFSSLIQCPKGNTSGLN--FNIYLSSLEGDKSQDEIDFEFLGKDKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKPMFLYASVWDASHIDKARWCGPY 713
            RF YGT+ + I+   G  SGLN  F  Y+   +  K  DEIDFE LGK+   VQ N Y +  G  E + D+    ++GF++Y   W  + I++ ++G++V   E  +    P     ++ S+W    +    W G +
Sbjct:  102 RFGYGTYEARIKAADG--SGLNSAFFTYIGPAD-KKPHDEIDFEVLGKNTAKVQINQYVSAKGGNEFLADVPGGANQGFNDYAFVWEKNRIRYYVNGELVH--EVTDPAKIPVNAQKIFFSLWGTDTL--TDWMGTF 231          
The following BLAST results are available for this feature:
BLAST of CN185888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
XTHB_PHAAN5.122e-1432.60Probable xyloglucan endotransglucosylase/hydrolase... [more]
CRH1_YEAST1.947e-1331.72Probable glycosidase CRH1 OS=Saccharomyces cerevis... [more]
CRR1_ASHGO1.262e-1230.52Probable glycosidase CRR1 OS=Ashbya gossypii GN=CR... [more]
XTH11_ARATH1.395e-1128.30Probable xyloglucan endotransglucosylase/hydrolase... [more]
CRR1_YEAST2.379e-1132.93Probable glycosidase CRR1 OS=Saccharomyces cerevis... [more]
EXOK_RHIME9.042e-1131.39Endo-1,3-1,4-beta-glycanase exoK OS=Rhizobium meli... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002A08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185888 ID=CN185888; Name=CN185888; organism=Citrus sinensis; type=EST; length=732bp
GAGGGGCAAGGCCCGTGAATCGTTTTTAGAAATGCTTAGGAGCAGTGGGC
TCACTGTAAAAAGTCTGGTTTCTCCTTCAGTTGACTTCACTTTCTTTCTT
CCGTAAATTGAAATCGGTAAGCAGCAATTCTGTCGTGACCCTTGAACTTG
AAATGGCGGATCCAGTTGTCCAGAGTCTCCATCAAACTGAACCCATAAAA
GAAATCGCCATAGATTACACCCCGGAAGCATGCACTCACTGCGCAGACTC
CAATTCGATCACACTCACCTTCGATCACCGCGGCGGAGCCAGGTGGCGCT
CCACCACTCGCTTCCTCTACGGCACCTTCAGCTCCCTGATCCAGTGCCCC
AAAGGCAACACTAGTGGCCTCAACTTCAACATCTACCTTTCTTCTCTAGA
AGGCGACAAATCCCAAGACGAAATCGACTTTGAATTCCTTGGCAAGGACA
AGACTATCGTTCAAACCAATTATTACACTACAGGAACCGGGAATAGAGAG
GAGATTCATGATCTGGGGTTCGATTGTTCTGAAGGATTTCATGAGTACGT
GATCAAGTGGGGTCCAGATTTGATCCAGTGGTTGATTGATGGGAAGGTGG
TGAGGAGAGCTGAGAGGAACGAGGGTGAGGGGTTTCCCAATAAACCAATG
TTTTTGTATGCTTCAGTTTGGGATGCTAGCCACATTGATAAGGCCAGGTG
GTGTGGGCCCTACGTGGGCTGTGATGCACCTT
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