CN185884

Overview
NameCN185884
Unique NameCN185884
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN185884 vs. ExPASy Swiss-Prot
Match: UBIQ_ACECL (Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.242e-14
Identity = 37/40 (92.50%), Postives = 40/40 (100.00%), Query Frame = 2 
Query:  620 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 739
            MQIFVKTLTGKTITLEVESSDT++NVK+KIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTVENVKSKIQDKEGIPPDQ 40
[Close]
BLAST of CN185884 vs. ExPASy Swiss-Prot
Match: UBIQ_XENLA (Ubiquitin OS=Xenopus laevis PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.846e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 2 
Query:  620 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 739
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 40
[Close]
BLAST of CN185884 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYCR (Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.846e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 2 
Query:  620 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 739
            MQIFVKTLTGKTI LEVESSDTI+NVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTIALEVESSDTIENVKAKIQDKEGIPPDQ 40
[Close]
BLAST of CN185884 vs. ExPASy Swiss-Prot
Match: UBIQ_SPOFR (Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.846e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 2 
Query:  620 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 739
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 40
[Close]
BLAST of CN185884 vs. ExPASy Swiss-Prot
Match: UBIQ_SHEEP (Ubiquitin OS=Ovis aries GN=UBA52 PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.846e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 2 
Query:  620 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 739
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 40
[Close]
BLAST of CN185884 vs. ExPASy Swiss-Prot
Match: UBIQ_RAT (Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.846e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 2 
Query:  620 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 739
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 40
[Close]
BLAST of CN185884 vs. ExPASy Swiss-Prot
Match: UBIQ_RABIT (Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.846e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 2 
Query:  620 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 739
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 40
[Close]
BLAST of CN185884 vs. ExPASy Swiss-Prot
Match: UBIQ_PONPY (Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.846e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 2 
Query:  620 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 739
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 40
[Close]
BLAST of CN185884 vs. ExPASy Swiss-Prot
Match: UBIQ_PLUXY (Ubiquitin OS=Plutella xylostella PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.846e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 2 
Query:  620 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 739
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 40
[Close]
BLAST of CN185884 vs. ExPASy Swiss-Prot
Match: UBIQ_PIG (Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.846e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 2 
Query:  620 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 739
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 40
The following BLAST results are available for this feature:
BLAST of CN185884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
UBIQ_ACECL5.242e-1492.50Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1[more]
UBIQ_XENLA6.846e-1495.00Ubiquitin OS=Xenopus laevis PE=1 SV=1[more]
UBIQ_TRYCR6.846e-1495.00Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1[more]
UBIQ_SPOFR6.846e-1495.00Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1[more]
UBIQ_SHEEP6.846e-1495.00Ubiquitin OS=Ovis aries GN=UBA52 PE=3 SV=2[more]
UBIQ_RAT6.846e-1495.00Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1[more]
UBIQ_RABIT6.846e-1495.00Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1[more]
UBIQ_PONPY6.846e-1495.00Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2[more]
UBIQ_PLUXY6.846e-1495.00Ubiquitin OS=Plutella xylostella PE=3 SV=1[more]
UBIQ_PIG6.846e-1495.00Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002A06_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185884 ID=CN185884; Name=CN185884; organism=Citrus sinensis; type=EST; length=739bp
AGGAGCAAAGCAAGTTTCGTACAATAAAGAGCCCTCTATTTCCAGTTTTA
AATTCCAAGTTCTAAGCTCAATCAACATGTCGGACACCTGCGGCAACTGC
GACTGCGCTGACAGGAACCAGTGTGTGAAGAAGGGAAGCAGCTATGCTGC
TGACTTCGTCGAGACTGACTTGAGCTTTGTCAGCACCGTTGTTGTCATGG
ACGTTCAGGCTGCTGAGACTGAAGGTAACTGCAAGTGCGGCCCCACCTGC
GCTTGTGTGAACTGCACTTGTGGTAGTCACTAATAAGCAAACACATGCAG
CAAAAAATAAGAAGCTGCAAGTGTGCCTAAATATTGTGGGGGTTAAGAAT
AATGTAAGGGTGATTAAAAAAAAAGAAAAATTCTCTACTTCGTTTTTATG
ATGGTCTACTACTAGTGTGTGGAGTGATGTGCGTGTTGTGTCACCCATCA
CTCGTAATGTTTTGTGTTTCCTTCTTCATAATCATGTAATATATGGCCAT
GGCCATGACCGTGGCCTTGTGTGGTTTAATTTTAATGTATTATTGTTAGC
CGCACCCTTGCCGACTATAACATTCAGAAGGAGTCCACCCTCCACCTGGT
CCTCCGTCTAAGAGGTGGAATGCAGATATTTGTGAAAACCCTGACTGGTA
AAACTATCACCTTGGAAGTTGAGAGTTCTGATACAATCGACAATGTCAAG
GCTAAGATTCAGGACAAGGAGGGAATCCCTCCTGATCAG
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