CN185884

Overview
NameCN185884
Unique NameCN185884
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN185884 vs. ExPASy Swiss-Prot
Match: UBIQ_DROME (Ubiquitin OS=Drosophila melanogaster GN=RpL40 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.846e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 2 
Query:  620 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 739
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 40
[Close]
BLAST of CN185884 vs. ExPASy Swiss-Prot
Match: UBIQ_CRIGR (Ubiquitin OS=Cricetulus griseus PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.846e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 2 
Query:  620 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 739
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 40
[Close]
BLAST of CN185884 vs. ExPASy Swiss-Prot
Match: UBIQ_CHICK (Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.846e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 2 
Query:  620 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 739
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 40
[Close]
BLAST of CN185884 vs. ExPASy Swiss-Prot
Match: UBIQ_CERCA (Ubiquitin OS=Ceratitis capitata PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.846e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 2 
Query:  620 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 739
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 40
[Close]
BLAST of CN185884 vs. ExPASy Swiss-Prot
Match: UBIQ_CAVPO (Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.846e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 2 
Query:  620 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 739
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 40
[Close]
BLAST of CN185884 vs. ExPASy Swiss-Prot
Match: UBIQ_CANFA (Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.846e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 2 
Query:  620 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 739
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 40
[Close]
BLAST of CN185884 vs. ExPASy Swiss-Prot
Match: UBIQ_CAMDR (Ubiquitin OS=Camelus dromedarius PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.846e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 2 
Query:  620 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 739
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 40
[Close]
BLAST of CN185884 vs. ExPASy Swiss-Prot
Match: UBIQ_BOVIN (Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.846e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 2 
Query:  620 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 739
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 40
[Close]
BLAST of CN185884 vs. ExPASy Swiss-Prot
Match: UBIQ_ACACA (Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.846e-14
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 2 
Query:  620 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 739
            MQIFVKTLTGKTITLEVESSDTI+NVK KIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKQKIQDKEGIPPDQ 40
[Close]
BLAST of CN185884 vs. ExPASy Swiss-Prot
Match: UBIQ_TETPY (Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.941e-14
Identity = 37/40 (92.50%), Postives = 40/40 (100.00%), Query Frame = 2 
Query:  620 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 739
            MQIFVKTLTGKTITL+VE+SDTI+NVKAKIQDKEGIPPDQ
Sbjct:    1 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQ 40
The following BLAST results are available for this feature:
BLAST of CN185884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
UBIQ_DROME6.846e-1495.00Ubiquitin OS=Drosophila melanogaster GN=RpL40 PE=1... [more]
UBIQ_CRIGR6.846e-1495.00Ubiquitin OS=Cricetulus griseus PE=3 SV=1[more]
UBIQ_CHICK6.846e-1495.00Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1[more]
UBIQ_CERCA6.846e-1495.00Ubiquitin OS=Ceratitis capitata PE=1 SV=1[more]
UBIQ_CAVPO6.846e-1495.00Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1[more]
UBIQ_CANFA6.846e-1495.00Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1[more]
UBIQ_CAMDR6.846e-1495.00Ubiquitin OS=Camelus dromedarius PE=3 SV=2[more]
UBIQ_BOVIN6.846e-1495.00Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1[more]
UBIQ_ACACA6.846e-1495.00Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1[more]
UBIQ_TETPY8.941e-1492.50Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002A06_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185884 ID=CN185884; Name=CN185884; organism=Citrus sinensis; type=EST; length=739bp
AGGAGCAAAGCAAGTTTCGTACAATAAAGAGCCCTCTATTTCCAGTTTTA
AATTCCAAGTTCTAAGCTCAATCAACATGTCGGACACCTGCGGCAACTGC
GACTGCGCTGACAGGAACCAGTGTGTGAAGAAGGGAAGCAGCTATGCTGC
TGACTTCGTCGAGACTGACTTGAGCTTTGTCAGCACCGTTGTTGTCATGG
ACGTTCAGGCTGCTGAGACTGAAGGTAACTGCAAGTGCGGCCCCACCTGC
GCTTGTGTGAACTGCACTTGTGGTAGTCACTAATAAGCAAACACATGCAG
CAAAAAATAAGAAGCTGCAAGTGTGCCTAAATATTGTGGGGGTTAAGAAT
AATGTAAGGGTGATTAAAAAAAAAGAAAAATTCTCTACTTCGTTTTTATG
ATGGTCTACTACTAGTGTGTGGAGTGATGTGCGTGTTGTGTCACCCATCA
CTCGTAATGTTTTGTGTTTCCTTCTTCATAATCATGTAATATATGGCCAT
GGCCATGACCGTGGCCTTGTGTGGTTTAATTTTAATGTATTATTGTTAGC
CGCACCCTTGCCGACTATAACATTCAGAAGGAGTCCACCCTCCACCTGGT
CCTCCGTCTAAGAGGTGGAATGCAGATATTTGTGAAAACCCTGACTGGTA
AAACTATCACCTTGGAAGTTGAGAGTTCTGATACAATCGACAATGTCAAG
GCTAAGATTCAGGACAAGGAGGGAATCCCTCCTGATCAG
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