CN185882

Overview
NameCN185882
Unique NameCN185882
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2605 contig Csv1_Contig2605:106..737. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185882 vs. ExPASy Swiss-Prot
Match: TRXF_SPIOL (Thioredoxin F-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.860e-11
Identity = 33/80 (41.25%), Postives = 53/80 (66.25%), Query Frame = 3
Query:  180 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 416
            VV+D    WCGPC+ +AP   +LA++  +V+FLK+D + E K++A +  +  +PTF  LKE  +V +V GAK ++L + I
Sbjct:  105 VVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAI 184          
BLAST of CN185882 vs. ExPASy Swiss-Prot
Match: TRXF_BRANA (Thioredoxin F-type, chloroplastic OS=Brassica napus GN=TRXF PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.860e-11
Identity = 33/92 (35.87%), Postives = 58/92 (63.04%), Query Frame = 3
Query:  171 KQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 443
            +++VV+D    WCGPC+ IAP    L++K  +V+FLK+D + E + +A +  +  +PTF  LK+ ++V +V GAK ++L   I    + +S+
Sbjct:   90 EKIVVLDMYTQWCGPCKVIAPKYKALSEKYEDVVFLKLDCNPENRPLAKELGIRVVPTFKILKDNQVVKEVTGAKYDDLVAAIETARSASSS 181          
BLAST of CN185882 vs. ExPASy Swiss-Prot
Match: THIO_CHLLT (Thioredoxin OS=Chlorobium limicola f.sp. thiosulfatophilum GN=trxA PE=1 SV=5)

HSP 1 Score: 69.3218 bits (168), Expect = 1.860e-11
Identity = 32/90 (35.56%), Postives = 57/90 (63.33%), Query Frame = 3
Query:  165 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 428
            ++ + V+VDF ASWCGPC  + P + +LA       +  K++VDE  ++A  + + ++PT + +K GK+VD++VGA  K  + + I +H+
Sbjct:   18 DSDKAVLVDFWASWCGPCMMLGPVIEQLADDYEGKAIIAKLNVDENPNIAGQYGIRSIPTMLIIKGGKVVDQMVGALPKNMIAKKIDEHI 107          
BLAST of CN185882 vs. ExPASy Swiss-Prot
Match: GLRX3_RAT (Glutaredoxin-3 OS=Rattus norvegicus GN=Glrx3 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.860e-11
Identity = 32/92 (34.78%), Postives = 58/92 (63.04%), Query Frame = 3
Query:  165 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 440
            +TK L+VV F A W   C  +   +AELAK+ P+V F+K++ + +  V+  + + ++PTF+F K  + VD++ GA   EL + + +H+++ S
Sbjct:   31 KTKSLLVVHFWAPWAPQCVQMNDVMAELAKEHPHVSFVKLEAEAVPEVSEKYEISSVPTFLFFKNSQKVDRLDGAHAPELTKKVQRHVSSGS 122          
BLAST of CN185882 vs. ExPASy Swiss-Prot
Match: GLRX3_MOUSE (Glutaredoxin-3 OS=Mus musculus GN=Glrx3 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.860e-11
Identity = 38/120 (31.67%), Postives = 71/120 (59.17%), Query Frame = 3
Query:   93 AAEEGQ----VIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 440
            AAE G+    V+   + + + E L+   +TK L+VV F A W   C  +   +AELAK+ P+V F+K++ + +  V+  + + ++PTF+F K  + VD++ GA   EL + + +H+++ +
Sbjct:    5 AAEAGEAAVAVVEVGSAQQFEELLRL--KTKSLLVVHFWAPWAPQCVQMNDVMAELAKEHPHVSFVKLEAEAVPEVSEKYEISSVPTFLFFKNSQKVDRLDGAHAPELTKKVQRHVSSGA 122          
BLAST of CN185882 vs. ExPASy Swiss-Prot
Match: THIO_SYNY3 (Thioredoxin OS=Synechocystis sp. (strain PCC 6803) GN=trxA PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 2.429e-11
Identity = 35/85 (41.18%), Postives = 54/85 (63.53%), Query Frame = 3
Query:  180 VVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 428
            V+VDF A WCGPCR +AP + E++++    V  +K++ DE  + A+ + + ++PT M  K G+ VD VVGA  K  L  T+ K+L
Sbjct:   23 VLVDFWAPWCGPCRMVAPVVDEISQQYEGKVKVVKLNTDENPNTASQYGIRSIPTLMIFKGGQRVDMVVGAVPKTTLASTLEKYL 107          
BLAST of CN185882 vs. ExPASy Swiss-Prot
Match: THIO_PORPU (Thioredoxin OS=Porphyra purpurea GN=trxA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.429e-11
Identity = 30/86 (34.88%), Postives = 57/86 (66.28%), Query Frame = 3
Query:  180 VVVDFTASWCGPCRFIAPFLAELAKKL-PNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHLA 431
            V+VDF A WCGPCR ++P +  +A++   ++  +K++ D+  ++A ++ + ++PT M  K G+ VD V+GA  K  L+ T+ K+++
Sbjct:   22 VLVDFWAPWCGPCRMVSPVVDAIAEEYESSIKVVKINTDDNPTIAAEYGIRSIPTLMIFKSGERVDTVIGAVPKSTLESTLNKYIS 107          
BLAST of CN185882 vs. ExPASy Swiss-Prot
Match: GLRX3_HUMAN (Glutaredoxin-3 OS=Homo sapiens GN=GLRX3 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.429e-11
Identity = 31/92 (33.70%), Postives = 56/92 (60.87%), Query Frame = 3
Query:  165 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 440
            + K L+VV F A W   C  +   +AELAK+LP V F+K++ + +  V+  + + ++PTF+F K  + +D++ GA   EL + + +H ++ S
Sbjct:   29 KAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASSGS 120          
BLAST of CN185882 vs. ExPASy Swiss-Prot
Match: THIO3_DICDI (Thioredoxin-3 OS=Dictyostelium discoideum GN=trxC PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.173e-11
Identity = 35/96 (36.46%), Postives = 55/96 (57.29%), Query Frame = 3
Query:  141 NEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHL 428
            NE+L K  +  Q VVVDF+A WCGPCR IAP   +L+ +     F+ VD+D++ +      + ++PTF F   G  V +  GA +  L+ T+  ++
Sbjct:   10 NEELDKYLQ-HQRVVVDFSAEWCGPCRAIAPVFDKLSNEFTTFTFVHVDIDKVNTHPIVKEIRSVPTFYFYVNGAKVSEFSGANEATLRSTLEANI 104          
BLAST of CN185882 vs. ExPASy Swiss-Prot
Match: THIO1_CORNE (Thioredoxin C-1 OS=Corynebacterium nephridii PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.144e-11
Identity = 35/90 (38.89%), Postives = 54/90 (60.00%), Query Frame = 3
Query:  126 TVEAWNEQLQKSN-ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA 389
            TV+  N   Q    ++ + VVVDF A WCGPC+ IAP L E+A ++   V   KV++DE   +A  + V ++PT +  K+G++   +VGA
Sbjct:    2 TVKVDNSNFQSDVLQSSEPVVVDFWAEWCGPCKMIAPALDEIATEMAGQVKIAKVNIDENPELAAQFGVRSIPTLLMFKDGELAANMVGA 91          
The following BLAST results are available for this feature:
BLAST of CN185882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
TRXF_SPIOL1.860e-1141.25Thioredoxin F-type, chloroplastic OS=Spinacia oler... [more]
TRXF_BRANA1.860e-1135.87Thioredoxin F-type, chloroplastic OS=Brassica napu... [more]
THIO_CHLLT1.860e-1135.56Thioredoxin OS=Chlorobium limicola f.sp. thiosulfa... [more]
GLRX3_RAT1.860e-1134.78Glutaredoxin-3 OS=Rattus norvegicus GN=Glrx3 PE=1 ... [more]
GLRX3_MOUSE1.860e-1131.67Glutaredoxin-3 OS=Mus musculus GN=Glrx3 PE=1 SV=1[more]
THIO_SYNY32.429e-1141.18Thioredoxin OS=Synechocystis sp. (strain PCC 6803)... [more]
THIO_PORPU2.429e-1134.88Thioredoxin OS=Porphyra purpurea GN=trxA PE=3 SV=1[more]
GLRX3_HUMAN2.429e-1133.70Glutaredoxin-3 OS=Homo sapiens GN=GLRX3 PE=1 SV=2[more]
THIO3_DICDI3.173e-1136.46Thioredoxin-3 OS=Dictyostelium discoideum GN=trxC ... [more]
THIO1_CORNE4.144e-1138.89Thioredoxin C-1 OS=Corynebacterium nephridii PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002A05_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185882 ID=CN185882; Name=CN185882; organism=Citrus sinensis; type=EST; length=638bp
CGCAAATCACCCGATTAAGAAAGCGAGGGAGAGAATAGAAGTATCGTTGG
GCGTAGTAGTGGTGGTAATAACCGCGGAAAGCAGAAATGGCAGCAGCAGA
AGAGGGACAAGTCATCGGGTGCCACACCGTTGAGGCCTGGAACGAGCAGC
TCCAGAAGAGCAATGAAACCAAACAGCTGGTTGTTGTTGATTTCACTGCT
TCATGGTGCGGACCATGCCGTTTCATTGCTCCTTTCTTGGCAGAGCTGGC
CAAGAAACTGCCTAATGTCCTGTTTCTGAAGGTTGATGTGGATGAACTGA
AGAGTGTTGCCACTGACTGGGCAGTGGAGGCCATGCCAACTTTCATGTTC
CTGAAAGAGGGGAAGATTGTGGACAAGGTGGTTGGAGCAAAGAAAGAGGA
ACTGCAGCAGACTATTGCCAAGCATCTGGCAACTGCTTCTGCCTAATAAG
TTATAACTATCCTCCTGCCTTTTGGCTTTAGAGGCTATAGACCTCAATAT
ATGCTATCAGTCTGTAATTTACTTATTAGAGTGGTTATGGGATTGTGTTT
GTTTGTGTGTTTTGAATATTCCGTAATTTACTGTTCTATGAAGCTCATAC
TGTGGTCTTTACAATNNANNANAAAAAAAAAAAAAAAA
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