DC900074

Overview
NameDC900074
Unique NameDC900074
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_ECOHS (3-phosphoshikimate 1-carboxyvinyltransferase OS=Escherichia coli O9:H4 (strain HS) GN=aroA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.066e-29
Identity = 76/212 (35.85%), Postives = 110/212 (51.89%), Query Frame = 2 
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G+   +L G PRM+ERPIG LV  L+  GA +  +   N PP+R+                   Q+             +  I I   L+S PY+++TL LM+ FGV +E+   + +F ++GGQ Y+SPG   VEGDASSASYF              G G +S+QGD++FA+ LEKMGA   W ++ ++ T        R  L A+D++MN
Sbjct:  109 GSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQGGFTGGNVDVDGSVSS--QFLTALLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIEN-QHYQQFVVKGGQSYQSPGTYLVEGDASSASYFLAAAAIKGGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDDYISCT--------RGELNAIDMDMN 309
[Close]
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_ECODH (3-phosphoshikimate 1-carboxyvinyltransferase OS=Escherichia coli (strain K12 / DH10B) GN=aroA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.066e-29
Identity = 76/212 (35.85%), Postives = 110/212 (51.89%), Query Frame = 2 
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G+   +L G PRM+ERPIG LV  L+  GA +  +   N PP+R+                   Q+             +  I I   L+S PY+++TL LM+ FGV +E+   + +F ++GGQ Y+SPG   VEGDASSASYF              G G +S+QGD++FA+ LEKMGA   W ++ ++ T        R  L A+D++MN
Sbjct:  109 GSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQGGFTGGNVDVDGSVSS--QFLTALLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIEN-QHYQQFVVKGGQSYQSPGTYLVEGDASSASYFLAAAAIKGGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDDYISCT--------RGELNAIDMDMN 309
[Close]
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_ECOBW (3-phosphoshikimate 1-carboxyvinyltransferase OS=Escherichia coli (strain K12 / BW2952) GN=aroA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.066e-29
Identity = 76/212 (35.85%), Postives = 110/212 (51.89%), Query Frame = 2 
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G+   +L G PRM+ERPIG LV  L+  GA +  +   N PP+R+                   Q+             +  I I   L+S PY+++TL LM+ FGV +E+   + +F ++GGQ Y+SPG   VEGDASSASYF              G G +S+QGD++FA+ LEKMGA   W ++ ++ T        R  L A+D++MN
Sbjct:  109 GSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQGGFTGGNVDVDGSVSS--QFLTALLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIEN-QHYQQFVVKGGQSYQSPGTYLVEGDASSASYFLAAAAIKGGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDDYISCT--------RGELNAIDMDMN 309
[Close]
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_ECO8A (3-phosphoshikimate 1-carboxyvinyltransferase OS=Escherichia coli O8 (strain IAI1) GN=aroA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.066e-29
Identity = 76/212 (35.85%), Postives = 110/212 (51.89%), Query Frame = 2 
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G+   +L G PRM+ERPIG LV  L+  GA +  +   N PP+R+                   Q+             +  I I   L+S PY+++TL LM+ FGV +E+   + +F ++GGQ Y+SPG   VEGDASSASYF              G G +S+QGD++FA+ LEKMGA   W ++ ++ T        R  L A+D++MN
Sbjct:  109 GSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQGGFTGGNVDVDGSVSS--QFLTALLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIEN-QHYQQFVVKGGQSYQSPGTYLVEGDASSASYFLAAAAIKGGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDDYISCT--------RGELNAIDMDMN 309
[Close]
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_ECO7I (3-phosphoshikimate 1-carboxyvinyltransferase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=aroA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.066e-29
Identity = 76/212 (35.85%), Postives = 110/212 (51.89%), Query Frame = 2 
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G+   +L G PRM+ERPIG LV  L+  GA +  +   N PP+R+                   Q+             +  I I   L+S PY+++TL LM+ FGV +E+   + +F ++GGQ Y+SPG   VEGDASSASYF              G G +S+QGD++FA+ LEKMGA   W ++ ++ T        R  L A+D++MN
Sbjct:  109 GSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQGGFTGGNVDVDGSVSS--QFLTALLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIEN-QHYQQFVVKGGQSYQSPGTYLVEGDASSASYFLAAAAIKGGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDDYISCT--------RGELNAIDMDMN 309
[Close]
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_ECO5E (3-phosphoshikimate 1-carboxyvinyltransferase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=aroA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.066e-29
Identity = 76/212 (35.85%), Postives = 110/212 (51.89%), Query Frame = 2 
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G+   +L G PRM+ERPIG LV  L+  GA +  +   N PP+R+                   Q+             +  I I   L+S PY+++TL LM+ FGV +E+   + +F ++GGQ Y+SPG   VEGDASSASYF              G G +S+QGD++FA+ LEKMGA   W ++ ++ T        R  L A+D++MN
Sbjct:  109 GSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQGGFTGGNVDVDGSVSS--QFLTALLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIEN-QHYQQFVVKGGQSYQSPGTYLVEGDASSASYFLAAAAIKGGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDDYISCT--------RGELNAIDMDMN 309
[Close]
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_ECO57 (3-phosphoshikimate 1-carboxyvinyltransferase OS=Escherichia coli O157:H7 GN=aroA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.066e-29
Identity = 76/212 (35.85%), Postives = 110/212 (51.89%), Query Frame = 2 
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G+   +L G PRM+ERPIG LV  L+  GA +  +   N PP+R+                   Q+             +  I I   L+S PY+++TL LM+ FGV +E+   + +F ++GGQ Y+SPG   VEGDASSASYF              G G +S+QGD++FA+ LEKMGA   W ++ ++ T        R  L A+D++MN
Sbjct:  109 GSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQGGFTGGNVDVDGSVSS--QFLTALLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIEN-QHYQQFVVKGGQSYQSPGTYLVEGDASSASYFLAAAAIKGGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDDYISCT--------RGELNAIDMDMN 309
[Close]
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_ECO55 (3-phosphoshikimate 1-carboxyvinyltransferase OS=Escherichia coli (strain 55989 / EAEC) GN=aroA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.066e-29
Identity = 76/212 (35.85%), Postives = 110/212 (51.89%), Query Frame = 2 
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G+   +L G PRM+ERPIG LV  L+  GA +  +   N PP+R+                   Q+             +  I I   L+S PY+++TL LM+ FGV +E+   + +F ++GGQ Y+SPG   VEGDASSASYF              G G +S+QGD++FA+ LEKMGA   W ++ ++ T        R  L A+D++MN
Sbjct:  109 GSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQGGFTGGNVDVDGSVSS--QFLTALLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIEN-QHYQQFVVKGGQSYQSPGTYLVEGDASSASYFLAAAAIKGGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDDYISCT--------RGELNAIDMDMN 309
[Close]
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_ECO24 (3-phosphoshikimate 1-carboxyvinyltransferase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=aroA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.066e-29
Identity = 76/212 (35.85%), Postives = 110/212 (51.89%), Query Frame = 2 
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G+   +L G PRM+ERPIG LV  L+  GA +  +   N PP+R+                   Q+             +  I I   L+S PY+++TL LM+ FGV +E+   + +F ++GGQ Y+SPG   VEGDASSASYF              G G +S+QGD++FA+ LEKMGA   W ++ ++ T        R  L A+D++MN
Sbjct:  109 GSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQGGFTGGNVDVDGSVSS--QFLTALLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIEN-QHYQQFVVKGGQSYQSPGTYLVEGDASSASYFLAAAAIKGGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDDYISCT--------RGELNAIDMDMN 309
[Close]
BLAST of DC900074 vs. ExPASy Swiss-Prot
Match: AROA_SHEFN (3-phosphoshikimate 1-carboxyvinyltransferase OS=Shewanella frigidimarina (strain NCIMB 400) GN=aroA PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.310e-29
Identity = 79/212 (37.26%), Postives = 109/212 (51.42%), Query Frame = 2 
Query:   65 GNLSYILDGVPRMRERPIGDLVTGLKQLGADVDCILGTNCPPVRINXXXXXXXXXXXXXXXXXXQYXXXXXXXXXXXXGNVEIEIIDKLISVPYVEMTLKLMERFGVFVEHGDSWDRFFIQGGQKYKSPGNAFVEGDASSASYFXXXXXXXXXXXXXEGCGTSSLQGDVKFAEXLEKMGAKXTWTENXVTVTGPPRDPYGRNPLRAVDVNMN 700
            G   + L G PRM ERPIGDLV  L+QLGADV  +     PP+ IN                  Q+             +V I+I  +L+S PY+++T+ LM++FGV V +   + RF I+ GQ Y SPG   VEGDASSASYF              G G  S+QGDVKFA+ L +MGA   W ++ +           ++ L A++++MN
Sbjct:  109 GQGEFTLTGEPRMEERPIGDLVDALRQLGADVTYLKNDGFPPLTINATGLNGGDVEIAGDLSS-QFLTALLMVAPLTKDSVNIKIKGELVSKPYIDITIALMKQFGVEVIN-HQYQRFEIKAGQHYVSPGKVLVEGDASSASYFLAAGAIKGGEVKVTGVGRLSIQGDVKFADALAQMGADIEWGDDYIIAR--------KSTLTAIEMDMN 310
The following BLAST results are available for this feature:
BLAST of DC900074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
AROA_ECOHS4.066e-2935.853-phosphoshikimate 1-carboxyvinyltransferase OS=Es... [more]
AROA_ECODH4.066e-2935.853-phosphoshikimate 1-carboxyvinyltransferase OS=Es... [more]
AROA_ECOBW4.066e-2935.853-phosphoshikimate 1-carboxyvinyltransferase OS=Es... [more]
AROA_ECO8A4.066e-2935.853-phosphoshikimate 1-carboxyvinyltransferase OS=Es... [more]
AROA_ECO7I4.066e-2935.853-phosphoshikimate 1-carboxyvinyltransferase OS=Es... [more]
AROA_ECO5E4.066e-2935.853-phosphoshikimate 1-carboxyvinyltransferase OS=Es... [more]
AROA_ECO574.066e-2935.853-phosphoshikimate 1-carboxyvinyltransferase OS=Es... [more]
AROA_ECO554.066e-2935.853-phosphoshikimate 1-carboxyvinyltransferase OS=Es... [more]
AROA_ECO244.066e-2935.853-phosphoshikimate 1-carboxyvinyltransferase OS=Es... [more]
AROA_SHEFN5.310e-2937.263-phosphoshikimate 1-carboxyvinyltransferase OS=Sh... [more]

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Properties
Property NameValue
Genbank descriptionDC900074 VSS Citrus sinensis cDNA clone VS27Q80 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900074 ID=DC900074; Name=DC900074; organism=Citrus sinensis; type=EST; length=704bp
CTCGTGCCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCGTGCC
GAATTCGGCACGAGGGCAACTTGAGCTATATCCTTGATGGGGTGCCTCGA
ATGAGGGAGAGACCAATTGGAGACTTGGTCACTGGTCTGAAGCAGCTAGG
TGCAGATGTAGATTGCATTTTAGGCACAAATTGCCCCCCTGTTCGTATCA
ATGGAAAGGGAGGCCTCCCTGGGGGAAAGGTGAAACTCTCTGGAAAGCTT
AGTAGTCAATACTTGACTGCTTTGCTCATGGCAGCTCCCTTGGCCCTCGG
AAATGTGGAAATTGAAATAATTGATAAACTGATTTCCGTTCCTTATGTTG
AGATGACTCTGAAGTTGATGGAGCGTTTTGGGGTCTTTGTAGAGCACGGT
GATAGCTGGGATCGGTTCTTCATCCAGGGGGGTCAAAAGTACAAGTCTCC
TGGAAATGCTTTTGTAGAAGGTGATGCTTCAAGTGCTAGTTACTTTGTAG
CTGGTGCTGCAGTAACTGGTGGGACCGTTACAGTTGAAGGTTGTGGGACA
AGTAGTTTACAGGGGGATGTGAAATTTGCTGAGGNTCTTGAGAAAATGGG
TGCCAAAGNTACCTGGACTGAAAACAGNGTAACTGTCACCGGACCACCAC
GAGATCCTTATGGAAGGAACCCTTTGCGTGCTGTAGATGTCAACATGAAC
AAAT
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